3GEOA

Sulfite reductase hemoprotein nitrite complex
Total Genus 156
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
156
sequence length
490
structure length
455
Chain Sequence
LLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILPVHQMLHSVGLDALDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Probing the catalytic mechanism of sulfite reductase by X-ray crystallography: structures of the Escherichia coli hemoprotein in complex with substrates, inhibitors, intermediates, and products.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Oxidoreductase
molecule keywords SULFITE REDUCTASE HEMOPROTEIN
total genus 156
structure length 455
sequence length 490
ec nomenclature ec 1.8.1.2: Assimilatory sulfite reductase (NADPH).
pdb deposition date 1997-07-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3geoA01
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3geoA03
3.90.480.10 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein;Domain 2 3geoA02
2AOPA 3B0GA 3VKRA 4S3BA 3MM6B 4S23A 2AKJA 4S3FA 5GEPA 4G9PA 3NOYA 1ZJ9A 4S3EA 4S3DA 2Y0FA 3VLZA 2V4JA 2XSJB 4S3AA 3MM8A 1AOPA 3VM0A 3MMCB 4S38A 3VKPA 2GEPA 3MM6A 3VLYA 6GEPA 3MM5A 3MM9A 3VKSA 8GEPA 7GEPA 3OR2B 3MMBA 3OR1A 4GEPA 3GEOA 3B0JA 3MMAB 4G38A 3VKQA 3VM1A 3B0MA 3MM7B 3MMCA 3MMBB 3OR1B 4G39A 4S39A 4AOPA 3MM9B 4S3CA 3AOPA 3B0NA 3MM7A 3MM5B 3VLXA 3B0HA 3MMAA 5AOPA 3B0LA 3OR2A 2XSJA 3VKTA 1ZJ8A 3MM8B 4HTRA 2V4JB
chains in the Genus database with same CATH superfamily
2AOPA 3B0GA 3VKRA 4S3BA 3MM6B 4S23A 2AKJA 4S3FA 5GEPA 4G9PA 3NOYA 1ZJ9A 4S3EA 4S3DA 2Y0FA 3VLZA 2V4JA 2XSJB 4S3AA 3MM8A 1AOPA 3VM0A 3MMCB 4S38A 3VKPA 2GEPA 3MM6A 3VLYA 6GEPA 3MM5A 3MM9A 3VKSA 8GEPA 7GEPA 3OR2B 3MMBA 3OR1A 4GEPA 3GEOA 3B0JA 3MMAB 4G38A 3VKQA 3VM1A 3B0MA 3MM7B 3MMCA 3MMBB 3OR1B 4G39A 4S39A 4AOPA 3MM9B 4S3CA 3AOPA 3B0NA 3MM7A 3MM5B 3VLXA 3B0HA 3MMAA 5AOPA 3B0LA 3OR2A 2XSJA 3VKTA 1ZJ8A 3MM8B 4HTRA 2V4JB
chains in the Genus database with same CATH topology
2AOPA 3B0GA 3VKRA 4S3BA 3MM6B 4S23A 2AKJA 4S3FA 5GEPA 4G9PA 3NOYA 1ZJ9A 4S3EA 4S3DA 2Y0FA 3VLZA 2V4JA 2XSJB 4S3AA 3MM8A 1AOPA 3VM0A 3MMCB 4S38A 3VKPA 2GEPA 3MM6A 3VLYA 6GEPA 3MM5A 3MM9A 3VKSA 8GEPA 7GEPA 3OR2B 3MMBA 3OR1A 4GEPA 3GEOA 3B0JA 3MMAB 4G38A 3VKQA 3VM1A 3B0MA 3MM7B 3MMCA 3MMBB 3OR1B 4G39A 4S39A 4AOPA 3MM9B 4S3CA 3AOPA 3B0NA 3MM7A 3MM5B 3VLXA 3B0HA 3MMAA 5AOPA 3B0LA 3OR2A 2XSJA 3VKTA 1ZJ8A 3MM8B 4HTRA 2V4JB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AOP A;  3B0G A;  3VKR A;  4S3B A;  3MM6 B;  4S23 A;  2AKJ A;  4S3F A;  5GEP A;  4G9P A;  3NOY A;  1ZJ9 A;  4S3E A;  4S3D A;  2Y0F A;  3VLZ A;  2V4J A;  2XSJ B;  4S3A A;  3MM8 A;  1AOP A;  3VM0 A;  3MMC B;  4S38 A;  3VKP A;  2GEP A;  3MM6 A;  3VLY A;  6GEP A;  3MM5 A;  3MM9 A;  3VKS A;  8GEP A;  7GEP A;  3OR2 B;  3MMB A;  3OR1 A;  4GEP A;  3GEO A;  3B0J A;  3MMA B;  4G38 A;  3VKQ A;  3VM1 A;  3B0M A;  3MM7 B;  3MMC A;  3MMB B;  3OR1 B;  4G39 A;  4S39 A;  4AOP A;  3MM9 B;  4S3C A;  3AOP A;  3B0N A;  3MM7 A;  3MM5 B;  3VLX A;  3B0H A;  3MMA A;  5AOP A;  3B0L A;  3OR2 A;  2XSJ A;  3VKT A;  1ZJ8 A;  3MM8 B;  4HTR A;  2V4J B; 
#chains in the Genus database with same CATH topology
 2AOP A;  3B0G A;  3VKR A;  4S3B A;  3MM6 B;  4S23 A;  2AKJ A;  4S3F A;  5GEP A;  4G9P A;  3NOY A;  1ZJ9 A;  4S3E A;  4S3D A;  2Y0F A;  3VLZ A;  2V4J A;  2XSJ B;  4S3A A;  3MM8 A;  1AOP A;  3VM0 A;  3MMC B;  4S38 A;  3VKP A;  2GEP A;  3MM6 A;  3VLY A;  6GEP A;  3MM5 A;  3MM9 A;  3VKS A;  8GEP A;  7GEP A;  3OR2 B;  3MMB A;  3OR1 A;  4GEP A;  3GEO A;  3B0J A;  3MMA B;  4G38 A;  3VKQ A;  3VM1 A;  3B0M A;  3MM7 B;  3MMC A;  3MMB B;  3OR1 B;  4G39 A;  4S39 A;  4AOP A;  3MM9 B;  4S3C A;  3AOP A;  3B0N A;  3MM7 A;  3MM5 B;  3VLX A;  3B0H A;  3MMA A;  5AOP A;  3B0L A;  3OR2 A;  2XSJ A;  3VKT A;  1ZJ8 A;  3MM8 B;  4HTR A;  2V4J B; 
#chains in the Genus database with same CATH homology
 2AOP A;  3B0G A;  3VKR A;  4S3B A;  3MM6 B;  4S23 A;  2AKJ A;  4S3F A;  5GEP A;  4G9P A;  3NOY A;  1ZJ9 A;  4S3E A;  4S3D A;  2Y0F A;  3VLZ A;  2V4J A;  2XSJ B;  4S3A A;  3MM8 A;  1AOP A;  3VM0 A;  3MMC B;  4S38 A;  3VKP A;  2GEP A;  3MM6 A;  3VLY A;  6GEP A;  3MM5 A;  3MM9 A;  3VKS A;  8GEP A;  7GEP A;  3OR2 B;  3MMB A;  3OR1 A;  4GEP A;  3GEO A;  3B0J A;  3MMA B;  4G38 A;  3VKQ A;  3VM1 A;  3B0M A;  3MM7 B;  3MMC A;  3MMB B;  3OR1 B;  4G39 A;  4S39 A;  4AOP A;  3MM9 B;  4S3C A;  3AOP A;  3B0N A;  3MM7 A;  3MM5 B;  3VLX A;  3B0H A;  3MMA A;  5AOP A;  3B0L A;  3OR2 A;  2XSJ A;  3VKT A;  1ZJ8 A;  3MM8 B;  4HTR A;  2V4J B; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...