3GEOA

Sulfite reductase hemoprotein nitrite complex
Total Genus 156
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
156
sequence length
490
structure length
455
Chain Sequence
LLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILPVHQMLHSVGLDALDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Probing the catalytic mechanism of sulfite reductase by X-ray crystallography: structures of the Escherichia coli hemoprotein in complex with substrates, inhibitors, intermediates, and products.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Oxidoreductase
molecule keywords SULFITE REDUCTASE HEMOPROTEIN
total genus 156
structure length 455
sequence length 490
ec nomenclature ec 1.8.1.2: Assimilatory sulfite reductase (NADPH).
pdb deposition date 1997-07-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3geoA01
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3geoA03
3.90.480.10 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein;Domain 2 3geoA02
2V4JA 3MM6A 3VKTA 7GEPA 4HTRA 3NOYA 3MMAB 3MMAA 4G39A 3B0LA 3OR1A 4S38A 5GEPA 3B0HA 2V4JB 3MM6B 3MM9A 3VLZA 4AOPA 3VKQA 1ZJ8A 3MM5B 3GEOA 6GEPA 4S23A 3B0JA 2AOPA 3MM7B 4S3DA 3OR2A 8GEPA 2Y0FA 4G9PA 3MM5A 3VKRA 3AOPA 3MM9B 2GEPA 3VM1A 3MMBA 2XSJB 3B0NA 3VKSA 3VM0A 1AOPA 5AOPA 2AKJA 4S39A 3MMBB 4S3BA 4GEPA 3VLYA 4S3EA 2XSJA 3MM7A 1ZJ9A 3OR2B 4G38A 3MM8B 3MMCB 3MMCA 3MM8A 4S3CA 4S3AA 3VKPA 3OR1B 3VLXA 3B0MA 4S3FA 3B0GA
chains in the Genus database with same CATH superfamily
2V4JA 3MM6A 3VKTA 7GEPA 4HTRA 3NOYA 3MMAB 3MMAA 4G39A 3B0LA 3OR1A 4S38A 5GEPA 3B0HA 2V4JB 3MM6B 3MM9A 3VLZA 4AOPA 3VKQA 1ZJ8A 3MM5B 3GEOA 6GEPA 4S23A 3B0JA 2AOPA 3MM7B 4S3DA 3OR2A 8GEPA 2Y0FA 4G9PA 3MM5A 3VKRA 3AOPA 3MM9B 2GEPA 3VM1A 3MMBA 2XSJB 3B0NA 3VKSA 3VM0A 1AOPA 5AOPA 2AKJA 4S39A 3MMBB 4S3BA 4GEPA 3VLYA 4S3EA 2XSJA 3MM7A 1ZJ9A 3OR2B 4G38A 3MM8B 3MMCB 3MMCA 3MM8A 4S3CA 4S3AA 3VKPA 3OR1B 3VLXA 3B0MA 4S3FA 3B0GA
chains in the Genus database with same CATH topology
2V4JA 3MM6A 3VKTA 7GEPA 4HTRA 3NOYA 3MMAB 3MMAA 4G39A 3B0LA 3OR1A 4S38A 5GEPA 3B0HA 2V4JB 3MM6B 3MM9A 3VLZA 4AOPA 3VKQA 1ZJ8A 3MM5B 3GEOA 6GEPA 4S23A 3B0JA 2AOPA 3MM7B 4S3DA 3OR2A 8GEPA 2Y0FA 4G9PA 3MM5A 3VKRA 3AOPA 3MM9B 2GEPA 3VM1A 3MMBA 2XSJB 3B0NA 3VKSA 3VM0A 1AOPA 5AOPA 2AKJA 4S39A 3MMBB 4S3BA 4GEPA 3VLYA 4S3EA 2XSJA 3MM7A 1ZJ9A 3OR2B 4G38A 3MM8B 3MMCB 3MMCA 3MM8A 4S3CA 4S3AA 3VKPA 3OR1B 3VLXA 3B0MA 4S3FA 3B0GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2V4J A;  3MM6 A;  3VKT A;  7GEP A;  4HTR A;  3NOY A;  3MMA B;  3MMA A;  4G39 A;  3B0L A;  3OR1 A;  4S38 A;  5GEP A;  3B0H A;  2V4J B;  3MM6 B;  3MM9 A;  3VLZ A;  4AOP A;  3VKQ A;  1ZJ8 A;  3MM5 B;  3GEO A;  6GEP A;  4S23 A;  3B0J A;  2AOP A;  3MM7 B;  4S3D A;  3OR2 A;  8GEP A;  2Y0F A;  4G9P A;  3MM5 A;  3VKR A;  3AOP A;  3MM9 B;  2GEP A;  3VM1 A;  3MMB A;  2XSJ B;  3B0N A;  3VKS A;  3VM0 A;  1AOP A;  5AOP A;  2AKJ A;  4S39 A;  3MMB B;  4S3B A;  4GEP A;  3VLY A;  4S3E A;  2XSJ A;  3MM7 A;  1ZJ9 A;  3OR2 B;  4G38 A;  3MM8 B;  3MMC B;  3MMC A;  3MM8 A;  4S3C A;  4S3A A;  3VKP A;  3OR1 B;  3VLX A;  3B0M A;  4S3F A;  3B0G A; 
#chains in the Genus database with same CATH topology
 2V4J A;  3MM6 A;  3VKT A;  7GEP A;  4HTR A;  3NOY A;  3MMA B;  3MMA A;  4G39 A;  3B0L A;  3OR1 A;  4S38 A;  5GEP A;  3B0H A;  2V4J B;  3MM6 B;  3MM9 A;  3VLZ A;  4AOP A;  3VKQ A;  1ZJ8 A;  3MM5 B;  3GEO A;  6GEP A;  4S23 A;  3B0J A;  2AOP A;  3MM7 B;  4S3D A;  3OR2 A;  8GEP A;  2Y0F A;  4G9P A;  3MM5 A;  3VKR A;  3AOP A;  3MM9 B;  2GEP A;  3VM1 A;  3MMB A;  2XSJ B;  3B0N A;  3VKS A;  3VM0 A;  1AOP A;  5AOP A;  2AKJ A;  4S39 A;  3MMB B;  4S3B A;  4GEP A;  3VLY A;  4S3E A;  2XSJ A;  3MM7 A;  1ZJ9 A;  3OR2 B;  4G38 A;  3MM8 B;  3MMC B;  3MMC A;  3MM8 A;  4S3C A;  4S3A A;  3VKP A;  3OR1 B;  3VLX A;  3B0M A;  4S3F A;  3B0G A; 
#chains in the Genus database with same CATH homology
 2V4J A;  3MM6 A;  3VKT A;  7GEP A;  4HTR A;  3NOY A;  3MMA B;  3MMA A;  4G39 A;  3B0L A;  3OR1 A;  4S38 A;  5GEP A;  3B0H A;  2V4J B;  3MM6 B;  3MM9 A;  3VLZ A;  4AOP A;  3VKQ A;  1ZJ8 A;  3MM5 B;  3GEO A;  6GEP A;  4S23 A;  3B0J A;  2AOP A;  3MM7 B;  4S3D A;  3OR2 A;  8GEP A;  2Y0F A;  4G9P A;  3MM5 A;  3VKR A;  3AOP A;  3MM9 B;  2GEP A;  3VM1 A;  3MMB A;  2XSJ B;  3B0N A;  3VKS A;  3VM0 A;  1AOP A;  5AOP A;  2AKJ A;  4S39 A;  3MMB B;  4S3B A;  4GEP A;  3VLY A;  4S3E A;  2XSJ A;  3MM7 A;  1ZJ9 A;  3OR2 B;  4G38 A;  3MM8 B;  3MMC B;  3MMC A;  3MM8 A;  4S3C A;  4S3A A;  3VKP A;  3OR1 B;  3VLX A;  3B0M A;  4S3F A;  3B0G A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...