3GKLC

Following evolutionary paths to high affinity and selectivity protein-protein interactions using colicin7 and immunity proteins
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
82
structure length
82
Chain Sequence
KHSISDYTEAEFLQLVATICDADATSEEELDKLITHFGEMTEHPSGSDLIYYPEEGDDDSPSGIVNTVKQWRAANGKSGFKQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords Colicin-E9 immunity protein
publication title Following evolutionary paths to high affinity and selectivity protein-protein interactions
rcsb
source organism Escherichia coli
total genus 24
structure length 82
sequence length 82
chains with identical sequence D
ec nomenclature
pdb deposition date 2009-03-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 3gklC00
1UJZA 4UHPB 1IMPA 3GJNA 1BXIA 2GZEA 2NO8A 2GZJA 1E0HA 1IMQA 1GXGA 2K5XA 2GZFA 1AYIA 1CEIA 5EW5E 3GKLC 4QKOA 7CEIA 2GZGA 1ZNVA 2K0DX 2JB0A 2WPTA 2GYKA 2GZIA 2ERHA 1GXHA 2JAZA 2VLOA 1UNKA 2VLQA 2VLNA 2VLPA 2JBGA 1MZ8A 3U43A 4F37A 1FR2A 1EMVA
chains in the Genus database with same CATH superfamily
2GDYA 3M1MA 3GJNA 2L4BA 1Q82Q 1K30A 3CC4P 1AYIA 2LL8A 1YJWP 3EJDA 3B5IA 2FHSC 2JBGA 1K9MQ 1M90Q 2PNGA 1S72P 2FACA 2NO8A 3G29A 4PXHB 3CPWO 3RG2A 3E2DA 1VQ6P 4H2XC 2Z45A 2K5XA 1VQ7P 2KGDA 1ZNVA 2LTEA 2Z44A 3G28A 2PEIA 4BPGA 2JAZA 2KR5A 1NQ4A 2VLOA 2VLNA 2P9XA 3CCQP 2MD9A 2DNWA 2LPKA 2N98A 1T8KA 4BPHA 1BAJA 1N8RQ 2XT1A 1E6JP 2AFEA 2GDWA 1EIAA 5JPAA 2MVVA 4U0CA 2GYKA 5HGNA 3HYBA 5HV8A 3DS5A 1EMVA 1OR5A 2QA4P 2KG8A 1KC8Q 5I4TG 2GZFA 2FVEA 3G71P 3CC2P 5EJDA 1EOQA 1M6EX 1GPJA 1VQ8P 2XV6A 1UNKA 3G6EP 1W2BO 2LKIA 2XZ1C 2JYLA 3CMAP 3OW2O 5HGLA 4QNBA 1E0HA 3VRLC 1GXGA 2LMLA 2EIAA 3CXCO 2K0DX 1DV5A 2K0YA 2OTJP 2K0XA 3G0VA 4DG9A 5CZDB 3CCLP 2FQ2A 4U0BA 4PH0A 3CCVP 2AVAA 4UHPB 5F2NA 1ACPA 2KW2A 3LMOA 3DS2A 1QVFO 2N5IA 5F2KA 3H0DA 3EJEA 1VQOP 2CGQA 2EHTA 4HKGA 2WPTA 2MY5A 1K8AQ 2PEMA 4XFXA 1A8OA 3U43A 3HZQA 2KGEA 3G26A 2K94A 2KOOA 2MVUA 1YJNP 4XRQA 2PY8A 3Q20A 1M6NA 2BHVA 1RO0A 2N50A 5HGOA 2JU2A 1A43A 2PENA 4F37A 1D1DA 1UJZA 2FVFA 3B4QA 1VKUA 2GZJA 1IMQA 2PEQA 2KOSA 2AF8A 3DS0A 4IZ6A 2JQ4A 3GZLA 4H2WC 2L0QA 2FQ1A 2KWLA 2XXMA 2XZ0D 3DTJA 1YHQP 1MZ8A 2CG5B 2FADA 2K2QA 2LIWA 1L0HA 1YJ9P 1AUMA 1VQ4P 2JO0A 1L0IA 2JGPA 4R0MA 1CEIA 2MF4A 7CEIA 2EFJA 2KODA 2LIUA 5KP7B 2ERHA 1VQ5P 1NJIQ 3CCRP 1QVGO 3CCJP 2QNWA 5KP8B 2FQ0A 2N6YA 1KQSO 2EHSA 2VSQA 2KGCA 2GDXA 2Z46A 1RNIA 1F80D 1JJ2O 1YITP 2LF4A 2PEJA 2VLQA 4XFZA 2OTLP 3G21A 3RG6C 2KGAA 3EJBA 2E1MA 2ROQA 4COPA 2KG6A 1HY8A 2FVAA 5DCKA 3GKLC 1IUQA 5F2OA 2PEOA 4U0DA 4COCA 2M8LA 1VQNP 1YI2P 2JYGA 1Z6MA 1Q86Q 2BUOA 4WYMA 1IMPA 1VQKP 1DNYA 2ONTA 3G1IA 1VQMP 4H2YC 4CA3A 2MR7A 2N6ZA 3H4EA 2AFDA 2KORA 4PWVB 3CCEP 2QEXP 2OARA 2LOLA 4PH1A 4XROA 1ZMBA 3WBHA 1VQPP 5EW5E 1M74A 3H47A 3DS4A 1YIJP 2JB0A 4NEOA 2GZIA 4U0EA 1VQ9P 5BS1A 3DPHA 5HVCA 3MGEA 1KLPA 3DS1A 2DGYA 1QRJA 2KG9A 3G4SP 3LRYA 1HQBA 2K93A 4MRTC 4XFYA 2CNRA 2M8PA 2KOPA 3CCUP 1K73Q 1VQLP 2X2BA 2CWOA 1AF8A 1VHNA 2CQ8A 4IPYA 3DS3A 3P05A 3G1GA 2GZEA 1Q7YQ 2KOQA 2N5HA 1X3OA 4U0AA 4QKOA 2EG5A 3I55P 2FAEA 2M5RA 5HGMA 5KP6B 2L9FA 2VLPA 2L22A 2M8NA 3CCMP 1FR2A 3NY7B 1RO2A 5BS2A 2MR8A 3NTEA 3CMEP 3CC7P 1BXIA 4U0FA 2JU1A 2GZGA 4M0IA 1KD1Q 3CCSP 1Q81Q 1GXHA 2PEKA 4GR6A 3CE7A 4BPFA 1M1KQ 2K92A 2L6EA 3I56P 3CD6P 3GZMA 4GR2A
chains in the Genus database with same CATH topology
1UJZA 4UHPB 1IMPA 3GJNA 1BXIA 2GZEA 2NO8A 2GZJA 1E0HA 1IMQA 1GXGA 2K5XA 2GZFA 1AYIA 1CEIA 5EW5E 3GKLC 4QKOA 7CEIA 2GZGA 1ZNVA 2K0DX 2JB0A 2WPTA 2GYKA 2GZIA 2ERHA 1GXHA 2JAZA 2VLOA 1UNKA 2VLQA 2VLNA 2VLPA 2JBGA 1MZ8A 3U43A 4F37A 1FR2A 1EMVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UJZ A;  4UHP B;  1IMP A;  3GJN A;  1BXI A;  2GZE A;  2NO8 A;  2GZJ A;  1E0H A;  1IMQ A;  1GXG A;  2K5X A;  2GZF A;  1AYI A;  1CEI A;  5EW5 E;  3GKL C;  4QKO A;  7CEI A;  2GZG A;  1ZNV A;  2K0D X;  2JB0 A;  2WPT A;  2GYK A;  2GZI A;  2ERH A;  1GXH A;  2JAZ A;  2VLO A;  1UNK A;  2VLQ A;  2VLN A;  2VLP A;  2JBG A;  1MZ8 A;  3U43 A;  4F37 A;  1FR2 A;  1EMV A; 
#chains in the Genus database with same CATH topology
 2GDY A;  3M1M A;  3GJN A;  2L4B A;  1Q82 Q;  1K30 A;  3CC4 P;  1AYI A;  2LL8 A;  1YJW P;  3EJD A;  3B5I A;  2FHS C;  2JBG A;  1K9M Q;  1M90 Q;  2PNG A;  1S72 P;  2FAC A;  2NO8 A;  3G29 A;  4PXH B;  3CPW O;  3RG2 A;  3E2D A;  1VQ6 P;  4H2X C;  2Z45 A;  2K5X A;  1VQ7 P;  2KGD A;  1ZNV A;  2LTE A;  2Z44 A;  3G28 A;  2PEI A;  4BPG A;  2JAZ A;  2KR5 A;  1NQ4 A;  2VLO A;  2VLN A;  2P9X A;  3CCQ P;  2MD9 A;  2DNW A;  2LPK A;  2N98 A;  1T8K A;  4BPH A;  1BAJ A;  1N8R Q;  2XT1 A;  1E6J P;  2AFE A;  2GDW A;  1EIA A;  5JPA A;  2MVV A;  4U0C A;  2GYK A;  5HGN A;  3HYB A;  5HV8 A;  3DS5 A;  1EMV A;  1OR5 A;  2QA4 P;  2KG8 A;  1KC8 Q;  5I4T G;  2GZF A;  2FVE A;  3G71 P;  3CC2 P;  5EJD A;  1EOQ A;  1M6E X;  1GPJ A;  1VQ8 P;  2XV6 A;  1UNK A;  3G6E P;  1W2B O;  2LKI A;  2XZ1 C;  2JYL A;  3CMA P;  3OW2 O;  5HGL A;  4QNB A;  1E0H A;  3VRL C;  1GXG A;  2LML A;  2EIA A;  3CXC O;  2K0D X;  1DV5 A;  2K0Y A;  2OTJ P;  2K0X A;  3G0V A;  4DG9 A;  5CZD B;  3CCL P;  2FQ2 A;  4U0B A;  4PH0 A;  3CCV P;  2AVA A;  4UHP B;  5F2N A;  1ACP A;  2KW2 A;  3LMO A;  3DS2 A;  1QVF O;  2N5I A;  5F2K A;  3H0D A;  3EJE A;  1VQO P;  2CGQ A;  2EHT A;  4HKG A;  2WPT A;  2MY5 A;  1K8A Q;  2PEM A;  4XFX A;  1A8O A;  3U43 A;  3HZQ A;  2KGE A;  3G26 A;  2K94 A;  2KOO A;  2MVU A;  1YJN P;  4XRQ A;  2PY8 A;  3Q20 A;  1M6N A;  2BHV A;  1RO0 A;  2N50 A;  5HGO A;  2JU2 A;  1A43 A;  2PEN A;  4F37 A;  1D1D A;  1UJZ A;  2FVF A;  3B4Q A;  1VKU A;  2GZJ A;  1IMQ A;  2PEQ A;  2KOS A;  2AF8 A;  3DS0 A;  4IZ6 A;  2JQ4 A;  3GZL A;  4H2W C;  2L0Q A;  2FQ1 A;  2KWL A;  2XXM A;  2XZ0 D;  3DTJ A;  1YHQ P;  1MZ8 A;  2CG5 B;  2FAD A;  2K2Q A;  2LIW A;  1L0H A;  1YJ9 P;  1AUM A;  1VQ4 P;  2JO0 A;  1L0I A;  2JGP A;  4R0M A;  1CEI A;  2MF4 A;  7CEI A;  2EFJ A;  2KOD A;  2LIU A;  5KP7 B;  2ERH A;  1VQ5 P;  1NJI Q;  3CCR P;  1QVG O;  3CCJ P;  2QNW A;  5KP8 B;  2FQ0 A;  2N6Y A;  1KQS O;  2EHS A;  2VSQ A;  2KGC A;  2GDX A;  2Z46 A;  1RNI A;  1F80 D;  1JJ2 O;  1YIT P;  2LF4 A;  2PEJ A;  2VLQ A;  4XFZ A;  2OTL P;  3G21 A;  3RG6 C;  2KGA A;  3EJB A;  2E1M A;  2ROQ A;  4COP A;  2KG6 A;  1HY8 A;  2FVA A;  5DCK A;  3GKL C;  1IUQ A;  5F2O A;  2PEO A;  4U0D A;  4COC A;  2M8L A;  1VQN P;  1YI2 P;  2JYG A;  1Z6M A;  1Q86 Q;  2BUO A;  4WYM A;  1IMP A;  1VQK P;  1DNY A;  2ONT A;  3G1I A;  1VQM P;  4H2Y C;  4CA3 A;  2MR7 A;  2N6Z A;  3H4E A;  2AFD A;  2KOR A;  4PWV B;  3CCE P;  2QEX P;  2OAR A;  2LOL A;  4PH1 A;  4XRO A;  1ZMB A;  3WBH A;  1VQP P;  5EW5 E;  1M74 A;  3H47 A;  3DS4 A;  1YIJ P;  2JB0 A;  4NEO A;  2GZI A;  4U0E A;  1VQ9 P;  5BS1 A;  3DPH A;  5HVC A;  3MGE A;  1KLP A;  3DS1 A;  2DGY A;  1QRJ A;  2KG9 A;  3G4S P;  3LRY A;  1HQB A;  2K93 A;  4MRT C;  4XFY A;  2CNR A;  2M8P A;  2KOP A;  3CCU P;  1K73 Q;  1VQL P;  2X2B A;  2CWO A;  1AF8 A;  1VHN A;  2CQ8 A;  4IPY A;  3DS3 A;  3P05 A;  3G1G A;  2GZE A;  1Q7Y Q;  2KOQ A;  2N5H A;  1X3O A;  4U0A A;  4QKO A;  2EG5 A;  3I55 P;  2FAE A;  2M5R A;  5HGM A;  5KP6 B;  2L9F A;  2VLP A;  2L22 A;  2M8N A;  3CCM P;  1FR2 A;  3NY7 B;  1RO2 A;  5BS2 A;  2MR8 A;  3NTE A;  3CME P;  3CC7 P;  1BXI A;  4U0F A;  2JU1 A;  2GZG A;  4M0I A;  1KD1 Q;  3CCS P;  1Q81 Q;  1GXH A;  2PEK A;  4GR6 A;  3CE7 A;  4BPF A;  1M1K Q;  2K92 A;  2L6E A;  3I56 P;  3CD6 P;  3GZM A;  4GR2 A; 
#chains in the Genus database with same CATH homology
 1UJZ A;  4UHP B;  1IMP A;  3GJN A;  1BXI A;  2GZE A;  2NO8 A;  2GZJ A;  1E0H A;  1IMQ A;  1GXG A;  2K5X A;  2GZF A;  1AYI A;  1CEI A;  5EW5 E;  3GKL C;  4QKO A;  7CEI A;  2GZG A;  1ZNV A;  2K0D X;  2JB0 A;  2WPT A;  2GYK A;  2GZI A;  2ERH A;  1GXH A;  2JAZ A;  2VLO A;  1UNK A;  2VLQ A;  2VLN A;  2VLP A;  2JBG A;  1MZ8 A;  3U43 A;  4F37 A;  1FR2 A;  1EMV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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