The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
132
|
sequence length |
356
|
structure length |
356
|
Chain Sequence |
QAMLIGEIMDLNLKNFLEDREEIIRDAKRKDEKSFKDFKKIVEEIKERENKDKIVCDFTEYNPLHKGHKYALEKGKEHGIFISVLPGPLERSGRGIPYFLNRYIRAEMAIRAGADIVVEGPPMGIMGSGQYMRCLIKMFYSLGAEIIPRGYIPEKTMEKVIDCINKGYHIQVKPYKIICIETGEILGEKLNIDNYVIASMSQMIYKLNREGLKFNPKFVFVKRLEGISGTKIREAIFSGKFEDIKNMLPKTTLSILKELYDNGKLNELILKRFEDRILETANEYDLYEYLPSNVAEILEKKRPFNNIEEIKNSLPYGFSRHFRERILSKLEARIPNETLSKYINNYPAKIKILAVK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The crystal structure of the protein with unknown function from Methanocaldococcus jannaschii
rcsb |
| molecule tags |
Structural genomics, unknown function
|
| source organism |
Methanocaldococcus jannaschii
|
| molecule keywords |
UPF0348 protein MJ0951
|
| total genus |
132
|
| structure length |
356
|
| sequence length |
356
|
| ec nomenclature | |
| pdb deposition date | 2009-03-13 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF05636 | HIGH_NTase1 | HIGH Nucleotidyl Transferase |
| A | PF16581 | HIGH_NTase1_ass | Cytidyltransferase-related C-terminal region |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Methane Monooxygenase Hydroxylase; Chain G, domain 1 | Methane Monooxygenase Hydroxylase; Chain G, domain 1 | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | HUPs |
