3GMJA

Crystal structure of mad mh2 domain
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
199
structure length
199
Chain Sequence
EPAFWASIAYYELNCRVGEVFHCNNNSVIVDGFTNPSNNSDRCCLGQLSNVNRNSTIENTRRHIGKGVHLYYVTGEVYAECLSDSAIFVQSRNCNYQHGFHPSTVCKIPPGCSLKIFNNQEFAQLLSQSVNNGFEAVYELTKMCTIRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLTQMGSPHNAISSVS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transcription
molecule keywords Protein mothers against dpp
publication title Crystal structure of the MH2 domain of Drosophila Mad
pubmed doi rcsb
source organism Drosophila melanogaster
total genus 54
structure length 199
sequence length 199
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2009-03-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03166 MH2 MH2 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.200.10 Mainly Beta Sandwich Tumour Suppressor Smad4 Tumour Suppressor Smad4 3gmjA00
1MK2A 1DD1A 1QWTA 3DSHA 3A77A 5BVIA 5JELA 5JEJA 1U7VA 5JEMA 1U7VB 1MR1A 4R9PA 5JEKA 1DEVA 1J2FA 5JERA 5C4VA 5JEOA 3DITA 1ZOQA 1U7FA 1KHUA 1U7FB 1KHXA 3GMJA 1G88A 1MJSA 1YGSA
chains in the Genus database with same CATH superfamily
1K2NA 1J4OA 1UJXA 1WLNA 1K3QA 5JELA 4V24A 5JEJA 2QV7A 1K3JA 2AFFA 3UMZA 2JPEA 5JEMA 1U7VB 3HUEA 2JQLA 5DJOA 4JIWD 1U0TA 1YJMA 4WERA 3VZCA 2I2FA 1DEVA 3I0NA 3V8MA 5JERA 2KB4A 5JEOA 2KKLA 3HUFA 1U7FB 1KHXA 1Z0UA 2AN1A 3VZDA 1J4QA 2FF4A 3V7YA 1Y3IA 3GQSA 2BONA 5DHQA 3VZBA 2I2CA 4JIVD 3DSHA 2JQIA 1J4PA 5BVIA 4L02A 3FM8A 3V8PA 3V7UA 1G6GA 2FEZA 2I29A 4QCJA 1R21A 3PO8A 4DY6A 2Q5FA 1K2MA 3I6UA 1U0RA 2I1WA 5EJIA 4D9VA 1Z0SA 5DHPA 3VA1A 3UOTA 3T5PA 3DITA 1GXCA 1K3NA 3UNNA 2EH0A 2P1RA 3MDBA 2I2DA 4A0EA 2JKDA 1SUWA 5EJHA 2G1LA 2XXSA 1ZOQA 1KHUA 1MK2A 1QWTA 1J4LA 2BRFA 2I2AA 3A77A 5EJGA 5DHRA 2XT9B 1U7VA 2PIEA 3UNMA 3VPYA 1QU5A 4HAOA 3UN0A 4JONA 4WRRA 4R9PA 5A8IA 5JEKA 2W3OA 2I2BA 4G2SA 1Z0ZA 3V80A 1J2FA 5DHTA 3V8QA 3OUNA 5C4VA 3VA4A 1U7FA 2LC1A 3AFOA 1J4KA 5DHUA 4EGXA 1FHQA 3GMJA 1LGPA 1MJSA 1YGSA 3V8NA 4EJQA 3UV0A 1DD1A 3S40A 4A4YA 5EJFA 1YJ5C 2CSWA 1YT5A 1LGQA 3I6WA 4H87A 3KT9A 1MR1A 1WV3A 2QVLA 1G3GA 1MZKA 2KB3A 3HX1A 3V8RA 5DHSA 3ELVA 3I0MA 1UHTA 5E50A 2A0TA 1FHRA 3POAA 2JQJA 4KU0D 2JGRA 3V7WA 2KFUA 3ELSA 1Y3HA 3PFNA 1G88A 1DMZA
chains in the Genus database with same CATH topology
1K2NA 1J4OA 1UJXA 1WLNA 1K3QA 5JELA 4V24A 5JEJA 2QV7A 1K3JA 2AFFA 3UMZA 2JPEA 5JEMA 1U7VB 3HUEA 2JQLA 5DJOA 4JIWD 1YJMA 4WERA 3VZCA 1DEVA 3I0NA 5JERA 2KB4A 5JEOA 2KKLA 3HUFA 1U7FB 1KHXA 3VZDA 1J4QA 2FF4A 3GQSA 2BONA 3VZBA 4JIVD 3DSHA 2JQIA 1J4PA 5BVIA 4L02A 3FM8A 1G6GA 2FEZA 4QCJA 1R21A 3PO8A 1K2MA 3I6UA 4D9VA 3VA1A 3UOTA 3T5PA 3DITA 1GXCA 1K3NA 3UNNA 2EH0A 2P1RA 3MDBA 4A0EA 2JKDA 2G1LA 2XXSA 1ZOQA 1KHUA 1MK2A 1QWTA 1J4LA 2BRFA 3A77A 2XT9B 1U7VA 2PIEA 3UNMA 3VPYA 1QU5A 3UN0A 4JONA 4WRRA 4R9PA 5A8IA 5JEKA 2W3OA 4G2SA 1J2FA 3OUNA 5C4VA 3VA4A 1U7FA 2LC1A 1J4KA 4EGXA 1FHQA 3GMJA 1LGPA 1MJSA 1YGSA 4EJQA 3UV0A 1DD1A 3S40A 4A4YA 1YJ5C 2CSWA 1LGQA 3I6WA 4H87A 3KT9A 1MR1A 1WV3A 2QVLA 1G3GA 1MZKA 2KB3A 3HX1A 3ELVA 3I0MA 1UHTA 5E50A 2A0TA 1FHRA 3POAA 2JQJA 4KU0D 2JGRA 2KFUA 3ELSA 1G88A 1DMZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MK2 A;  1DD1 A;  1QWT A;  3DSH A;  3A77 A;  5BVI A;  5JEL A;  5JEJ A;  1U7V A;  5JEM A;  1U7V B;  1MR1 A;  4R9P A;  5JEK A;  1DEV A;  1J2F A;  5JER A;  5C4V A;  5JEO A;  3DIT A;  1ZOQ A;  1U7F A;  1KHU A;  1U7F B;  1KHX A;  3GMJ A;  1G88 A;  1MJS A;  1YGS A; 
#chains in the Genus database with same CATH topology
 1K2N A;  1J4O A;  1UJX A;  1WLN A;  1K3Q A;  5JEL A;  4V24 A;  5JEJ A;  2QV7 A;  1K3J A;  2AFF A;  3UMZ A;  2JPE A;  5JEM A;  1U7V B;  3HUE A;  2JQL A;  5DJO A;  4JIW D;  1U0T A;  1YJM A;  4WER A;  3VZC A;  2I2F A;  1DEV A;  3I0N A;  3V8M A;  5JER A;  2KB4 A;  5JEO A;  2KKL A;  3HUF A;  1U7F B;  1KHX A;  1Z0U A;  2AN1 A;  3VZD A;  1J4Q A;  2FF4 A;  3V7Y A;  1Y3I A;  3GQS A;  2BON A;  5DHQ A;  3VZB A;  2I2C A;  4JIV D;  3DSH A;  2JQI A;  1J4P A;  5BVI A;  4L02 A;  3FM8 A;  3V8P A;  3V7U A;  1G6G A;  2FEZ A;  2I29 A;  4QCJ A;  1R21 A;  3PO8 A;  4DY6 A;  2Q5F A;  1K2M A;  3I6U A;  1U0R A;  2I1W A;  5EJI A;  4D9V A;  1Z0S A;  5DHP A;  3VA1 A;  3UOT A;  3T5P A;  3DIT A;  1GXC A;  1K3N A;  3UNN A;  2EH0 A;  2P1R A;  3MDB A;  2I2D A;  4A0E A;  2JKD A;  1SUW A;  5EJH A;  2G1L A;  2XXS A;  1ZOQ A;  1KHU A;  1MK2 A;  1QWT A;  1J4L A;  2BRF A;  2I2A A;  3A77 A;  5EJG A;  5DHR A;  2XT9 B;  1U7V A;  2PIE A;  3UNM A;  3VPY A;  1QU5 A;  4HAO A;  3UN0 A;  4JON A;  4WRR A;  4R9P A;  5A8I A;  5JEK A;  2W3O A;  2I2B A;  4G2S A;  1Z0Z A;  3V80 A;  1J2F A;  5DHT A;  3V8Q A;  3OUN A;  5C4V A;  3VA4 A;  1U7F A;  2LC1 A;  3AFO A;  1J4K A;  5DHU A;  4EGX A;  1FHQ A;  3GMJ A;  1LGP A;  1MJS A;  1YGS A;  3V8N A;  4EJQ A;  3UV0 A;  1DD1 A;  3S40 A;  4A4Y A;  5EJF A;  1YJ5 C;  2CSW A;  1YT5 A;  1LGQ A;  3I6W A;  4H87 A;  3KT9 A;  1MR1 A;  1WV3 A;  2QVL A;  1G3G A;  1MZK A;  2KB3 A;  3HX1 A;  3V8R A;  5DHS A;  3ELV A;  3I0M A;  1UHT A;  5E50 A;  2A0T A;  1FHR A;  3POA A;  2JQJ A;  4KU0 D;  2JGR A;  3V7W A;  2KFU A;  3ELS A;  1Y3H A;  3PFN A;  1G88 A;  1DMZ A; 
#chains in the Genus database with same CATH homology
 1K2N A;  1J4O A;  1UJX A;  1WLN A;  1K3Q A;  5JEL A;  4V24 A;  5JEJ A;  2QV7 A;  1K3J A;  2AFF A;  3UMZ A;  2JPE A;  5JEM A;  1U7V B;  3HUE A;  2JQL A;  5DJO A;  4JIW D;  1YJM A;  4WER A;  3VZC A;  1DEV A;  3I0N A;  5JER A;  2KB4 A;  5JEO A;  2KKL A;  3HUF A;  1U7F B;  1KHX A;  3VZD A;  1J4Q A;  2FF4 A;  3GQS A;  2BON A;  3VZB A;  4JIV D;  3DSH A;  2JQI A;  1J4P A;  5BVI A;  4L02 A;  3FM8 A;  1G6G A;  2FEZ A;  4QCJ A;  1R21 A;  3PO8 A;  1K2M A;  3I6U A;  4D9V A;  3VA1 A;  3UOT A;  3T5P A;  3DIT A;  1GXC A;  1K3N A;  3UNN A;  2EH0 A;  2P1R A;  3MDB A;  4A0E A;  2JKD A;  2G1L A;  2XXS A;  1ZOQ A;  1KHU A;  1MK2 A;  1QWT A;  1J4L A;  2BRF A;  3A77 A;  2XT9 B;  1U7V A;  2PIE A;  3UNM A;  3VPY A;  1QU5 A;  3UN0 A;  4JON A;  4WRR A;  4R9P A;  5A8I A;  5JEK A;  2W3O A;  4G2S A;  1J2F A;  3OUN A;  5C4V A;  3VA4 A;  1U7F A;  2LC1 A;  1J4K A;  4EGX A;  1FHQ A;  3GMJ A;  1LGP A;  1MJS A;  1YGS A;  4EJQ A;  3UV0 A;  1DD1 A;  3S40 A;  4A4Y A;  1YJ5 C;  2CSW A;  1LGQ A;  3I6W A;  4H87 A;  3KT9 A;  1MR1 A;  1WV3 A;  2QVL A;  1G3G A;  1MZK A;  2KB3 A;  3HX1 A;  3ELV A;  3I0M A;  1UHT A;  5E50 A;  2A0T A;  1FHR A;  3POA A;  2JQJ A;  4KU0 D;  2JGR A;  2KFU A;  3ELS A;  1G88 A;  1DMZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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