3GMUB

Crystal structure of beta-lactamse inhibitory protein (blip) in apo form
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
165
structure length
165
Chain Sequence
AGVMTGAKFTQIQFGMTRQQVLDIAGAENCETGGSFGDSIHCRGHAAGDYYAYATFGFTSAAADAKVDSKSQEKLLAPSAPTLTLAKFNQVTVGMTRAQVLATVGQGSCTTWSEYYPAYPSTAGVTLSLSCFDVDGYSSTGFYRGSAHLWFTDGVLQGKRQWDLV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Beta-lactamase inhibitory protein
publication title Insights into positive and negative requirements for protein-protein interactions by crystallographic analysis of the beta-lactamase inhibitory proteins BLIP, BLIP-I, and BLP.
pubmed doi rcsb
molecule tags Protein binding
total genus 47
structure length 165
sequence length 165
ec nomenclature
pdb deposition date 2009-03-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF07467 BLIP Beta-lactamase inhibitor (BLIP)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1450.10 Alpha Beta 2-Layer Sandwich Beta-lactamase Inhibitory Protein; Chain:B, domain 1 Beta-lactamase Inhibitory Protein; Chain:B, domain 1 3gmuB01
3.30.1450.10 Alpha Beta 2-Layer Sandwich Beta-lactamase Inhibitory Protein; Chain:B, domain 1 Beta-lactamase Inhibitory Protein; Chain:B, domain 1 3gmuB02
3E2LC 2YH9A 3D4EA 2KM7A 1JTGB 2KXXA 2PXGA 3GMUB 2G2UB 5D0QE 1S0WC 2B5RC 4DM5A 3C4PB 3C4OB 5D0OE 2G2WB 3N4IB 3C7UB 5AYWE 3E2KC 3C7VB 5EKQE 1XXMC
chains in the Genus database with same CATH superfamily
4HSIA 3E2LC 3NWFA 2YH9A 3D4EA 3NW8A 2KM7A 1JTGB 3NWAA 2KXXA 2PXGA 3GMUB 2G2UB 5D0QE 1S0WC 2B5RC 4DM5A 3C4PB 3C4OB 5D0OE 4L1RA 2G2WB 3NWDA 2GUMA 3N4IB 3C7UB 5AYWE 3E2KC 3C7VB 5EKQE 3FVCA 1XXMC
chains in the Genus database with same CATH topology
4HSIA 3E2LC 3NWFA 2YH9A 3D4EA 3NW8A 2KM7A 1JTGB 3NWAA 2KXXA 2PXGA 3GMUB 2G2UB 5D0QE 1S0WC 2B5RC 4DM5A 3C4PB 3C4OB 5D0OE 4L1RA 2G2WB 3NWDA 2GUMA 3N4IB 3C7UB 5AYWE 3E2KC 3C7VB 5EKQE 3FVCA 1XXMC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3E2L C;  2YH9 A;  3D4E A;  2KM7 A;  1JTG B;  2KXX A;  2PXG A;  3GMU B;  2G2U B;  5D0Q E;  1S0W C;  2B5R C;  4DM5 A;  3C4P B;  3C4O B;  5D0O E;  2G2W B;  3N4I B;  3C7U B;  5AYW E;  3E2K C;  3C7V B;  5EKQ E;  1XXM C; 
#chains in the Genus database with same CATH topology
 4HSI A;  3E2L C;  3NWF A;  2YH9 A;  3D4E A;  3NW8 A;  2KM7 A;  1JTG B;  3NWA A;  2KXX A;  2PXG A;  3GMU B;  2G2U B;  5D0Q E;  1S0W C;  2B5R C;  4DM5 A;  3C4P B;  3C4O B;  5D0O E;  4L1R A;  2G2W B;  3NWD A;  2GUM A;  3N4I B;  3C7U B;  5AYW E;  3E2K C;  3C7V B;  5EKQ E;  3FVC A;  1XXM C; 
#chains in the Genus database with same CATH homology
 4HSI A;  3E2L C;  3NWF A;  2YH9 A;  3D4E A;  3NW8 A;  2KM7 A;  1JTG B;  3NWA A;  2KXX A;  2PXG A;  3GMU B;  2G2U B;  5D0Q E;  1S0W C;  2B5R C;  4DM5 A;  3C4P B;  3C4O B;  5D0O E;  4L1R A;  2G2W B;  3NWD A;  2GUM A;  3N4I B;  3C7U B;  5AYW E;  3E2K C;  3C7V B;  5EKQ E;  3FVC A;  1XXM C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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