3GMUB

Crystal structure of beta-lactamse inhibitory protein (blip) in apo form
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
165
structure length
165
Chain Sequence
AGVMTGAKFTQIQFGMTRQQVLDIAGAENCETGGSFGDSIHCRGHAAGDYYAYATFGFTSAAADAKVDSKSQEKLLAPSAPTLTLAKFNQVTVGMTRAQVLATVGQGSCTTWSEYYPAYPSTAGVTLSLSCFDVDGYSSTGFYRGSAHLWFTDGVLQGKRQWDLV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords Beta-lactamase inhibitory protein
publication title Insights into positive and negative requirements for protein-protein interactions by crystallographic analysis of the beta-lactamase inhibitory proteins BLIP, BLIP-I, and BLP.
pubmed doi rcsb
total genus 47
structure length 165
sequence length 165
ec nomenclature
pdb deposition date 2009-03-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF07467 BLIP Beta-lactamase inhibitor (BLIP)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1450.10 Alpha Beta 2-Layer Sandwich Beta-lactamase Inhibitory Protein; Chain:B, domain 1 Beta-lactamase Inhibitory Protein; Chain:B, domain 1 3gmuB01
3.30.1450.10 Alpha Beta 2-Layer Sandwich Beta-lactamase Inhibitory Protein; Chain:B, domain 1 Beta-lactamase Inhibitory Protein; Chain:B, domain 1 3gmuB02
2KM7A 2PXGA 3E2LC 5D0QE 3E2KC 1JTGB 3C4PB 3D4EA 3C7UB 1S0WC 3C4OB 2G2UB 2KXXA 3GMUB 2B5RC 4DM5A 5EKQE 2YH9A 3C7VB 1XXMC 5AYWE 5D0OE 3N4IB 2G2WB
chains in the Genus database with same CATH superfamily
2KM7A 2PXGA 2GUMA 3E2LC 4L1RA 3NWDA 5D0QE 3E2KC 1JTGB 3NWFA 3C4PB 3D4EA 3C7UB 1S0WC 3C4OB 2G2UB 2KXXA 3GMUB 2B5RC 4HSIA 4DM5A 3NW8A 5EKQE 2YH9A 3C7VB 3FVCA 1XXMC 5AYWE 5D0OE 3N4IB 2G2WB 3NWAA
chains in the Genus database with same CATH topology
2KM7A 2PXGA 2GUMA 3E2LC 4L1RA 3NWDA 5D0QE 3E2KC 1JTGB 3NWFA 3C4PB 3D4EA 3C7UB 1S0WC 3C4OB 2G2UB 2KXXA 3GMUB 2B5RC 4HSIA 4DM5A 3NW8A 5EKQE 2YH9A 3C7VB 3FVCA 1XXMC 5AYWE 5D0OE 3N4IB 2G2WB 3NWAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KM7 A;  2PXG A;  3E2L C;  5D0Q E;  3E2K C;  1JTG B;  3C4P B;  3D4E A;  3C7U B;  1S0W C;  3C4O B;  2G2U B;  2KXX A;  3GMU B;  2B5R C;  4DM5 A;  5EKQ E;  2YH9 A;  3C7V B;  1XXM C;  5AYW E;  5D0O E;  3N4I B;  2G2W B; 
#chains in the Genus database with same CATH topology
 2KM7 A;  2PXG A;  2GUM A;  3E2L C;  4L1R A;  3NWD A;  5D0Q E;  3E2K C;  1JTG B;  3NWF A;  3C4P B;  3D4E A;  3C7U B;  1S0W C;  3C4O B;  2G2U B;  2KXX A;  3GMU B;  2B5R C;  4HSI A;  4DM5 A;  3NW8 A;  5EKQ E;  2YH9 A;  3C7V B;  3FVC A;  1XXM C;  5AYW E;  5D0O E;  3N4I B;  2G2W B;  3NWA A; 
#chains in the Genus database with same CATH homology
 2KM7 A;  2PXG A;  2GUM A;  3E2L C;  4L1R A;  3NWD A;  5D0Q E;  3E2K C;  1JTG B;  3NWF A;  3C4P B;  3D4E A;  3C7U B;  1S0W C;  3C4O B;  2G2U B;  2KXX A;  3GMU B;  2B5R C;  4HSI A;  4DM5 A;  3NW8 A;  5EKQ E;  2YH9 A;  3C7V B;  3FVC A;  1XXM C;  5AYW E;  5D0O E;  3N4I B;  2G2W B;  3NWA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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