3GN9A

Crystal structure of the major pseudopilin from the type 2 secretion system of vibrio vulnificus
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
112
structure length
112
Chain Sequence
GNKEKADQQKAITDIVALENALDMYKLDNSVYPTTDQGLEALVTKPSSPEPRNYRNGGYIKRLPKDPWGNEYQYMSPGDKGTIDIFTLGADGQEGGEGAAADIGNWNMQDFQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein transport
molecule keywords Type II secretory pathway, pseudopilin EpsG
publication title Calcium is essential for the major pseudopilin in the type 2 secretion system.
pubmed doi rcsb
source organism Vibrio vulnificus
total genus 30
structure length 112
sequence length 112
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2009-03-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.700.10 Alpha Beta 2-Layer Sandwich Glycoprotein, Type 4 Pilin Glycoprotein, Type 4 Pilin 3gn9A01
3FU1A 1X6PA 1X6XX 1T92A 4V1JA 1QVEA 2KEPA 2M7GA 4LW9A 1AY2A 3JYZA 1X6YA 1X6QA 1DZOA 3GN9A 3JZZA 1X6ZA 5JW8A 3G20A 3SOJA 2PILA 1OQWA 1HPWA 1RG0A 2HI2A 2PY0A 1X6RA 3SOKA
chains in the Genus database with same CATH superfamily
3FU1A 1X6PA 1X6XX 1T92A 4V1JA 3N6RA 1QVEA 1VAJA 2KEPA 2M7GA 3U9TA 4LW9A 1AY2A 3JYZA 1X6YA 1X6QA 1DZOA 1WSCA 1ZQ7A 3GN9A 3JZZA 1X6ZA 3U9SA 5JW8A 3G20A 3SOJA 2PILA 1OQWA 1HPWA 1RG0A 2HI2A 2PY0A 3SOKA 1X6RA 2M3KA
chains in the Genus database with same CATH topology
3FU1A 1X6PA 1X6XX 1T92A 4V1JA 3N6RA 1QVEA 2KEPA 2M7GA 3U9TA 4LW9A 1AY2A 3JYZA 1X6YA 1X6QA 1DZOA 3GN9A 3JZZA 1X6ZA 3U9SA 5JW8A 3G20A 3SOJA 2PILA 1OQWA 1HPWA 1RG0A 2HI2A 2PY0A 3SOKA 1X6RA 2M3KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FU1 A;  1X6P A;  1X6X X;  1T92 A;  4V1J A;  1QVE A;  2KEP A;  2M7G A;  4LW9 A;  1AY2 A;  3JYZ A;  1X6Y A;  1X6Q A;  1DZO A;  3GN9 A;  3JZZ A;  1X6Z A;  5JW8 A;  3G20 A;  3SOJ A;  2PIL A;  1OQW A;  1HPW A;  1RG0 A;  2HI2 A;  2PY0 A;  1X6R A;  3SOK A; 
#chains in the Genus database with same CATH topology
 3FU1 A;  1X6P A;  1X6X X;  1T92 A;  4V1J A;  3N6R A;  1QVE A;  1VAJ A;  2KEP A;  2M7G A;  3U9T A;  4LW9 A;  1AY2 A;  3JYZ A;  1X6Y A;  1X6Q A;  1DZO A;  1WSC A;  1ZQ7 A;  3GN9 A;  3JZZ A;  1X6Z A;  3U9S A;  5JW8 A;  3G20 A;  3SOJ A;  2PIL A;  1OQW A;  1HPW A;  1RG0 A;  2HI2 A;  2PY0 A;  3SOK A;  1X6R A;  2M3K A; 
#chains in the Genus database with same CATH homology
 3FU1 A;  1X6P A;  1X6X X;  1T92 A;  4V1J A;  3N6R A;  1QVE A;  2KEP A;  2M7G A;  3U9T A;  4LW9 A;  1AY2 A;  3JYZ A;  1X6Y A;  1X6Q A;  1DZO A;  3GN9 A;  3JZZ A;  1X6Z A;  3U9S A;  5JW8 A;  3G20 A;  3SOJ A;  2PIL A;  1OQW A;  1HPW A;  1RG0 A;  2HI2 A;  2PY0 A;  3SOK A;  1X6R A;  2M3K A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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