3GP4A

Crystal structure of putative merr family transcriptional regulator from listeria monocytogenes
Total Genus 52
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
132
structure length
132
Chain Sequence
SLNIKEASEKSGVSADTIRYYERIGLIPPIHRNESGVRKFGAEDLRWILFTRQMRRAGLSIEALIDYLALFREGEHTLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKDFNVERS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription regulator
molecule keywords Transcriptional regulator, MerR family
publication title Structure of putative MerR family transcriptional regulator from Listeria monocytogenes
rcsb
source organism Listeria monocytogenes str. 4b f2365
total genus 52
structure length 132
sequence length 132
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-03-20
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1660.10 Mainly Alpha Orthogonal Bundle Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 3gp4A00
5I44A 5E01A 3Q5PA 3Q2YA 4R24B 1Q0AA 3GP4A 4R22B 2ZHGA 3Q5RA 5D90A 1Q05A 2JMLA 4WLSA 1EXJA 3UCSA 3HH0A 3D6YA 3Q1MA 2ZHHA 1R8DA 5D8CA 3QAOA 3D70A 4J2NA 1EXIA 3GPVA 1Q08A 3Q3DA 5I41B 1Q09A 3Q5SA 3IAOA 2DG6A 2VZ4A 4WLWA 1Q07A 1R8EA 3D6ZA 4R4EA 3D71A 1Q06A 1JBGA
chains in the Genus database with same CATH superfamily
5I44A 5E01A 3Q5PA 3Q2YA 4R24B 1Q0AA 3GP4A 1LX8A 4R22B 2ZHGA 3Q5RA 5D90A 2OG0A 1Q05A 2JMLA 4WLSA 1EXJA 3UCSA 3HH0A 3D6YA 3Q1MA 1PM6A 2ZHHA 3EZ6A 1RH6A 1R8DA 4R4EA 5D8CA 3QAOA 3D70A 4J2NA 1EXIA 2IEFA 3GPVA 1Q08A 3Q3DA 5I41B 1Q09A 3Q5SA 2KVVA 3EZFA 2DG6A 3EZ7A 3IAOA 4WLWA 4DCZA 1Q07A 2VZ4A 1R8EA 3EZ9A 1Q06A 3EZ2A 3D6ZA 4LHFA 3D71A 1Y6UA 1JBGA
chains in the Genus database with same CATH topology
5I44A 5E01A 3Q5PA 3Q2YA 4R24B 1Q0AA 3GP4A 1LX8A 4R22B 2ZHGA 3Q5RA 5D90A 2OG0A 1Q05A 2JMLA 4WLSA 1EXJA 3UCSA 3HH0A 3D6YA 3Q1MA 1PM6A 2ZHHA 3EZ6A 1RH6A 1R8DA 4R4EA 5D8CA 3QAOA 3D70A 4J2NA 1EXIA 2IEFA 3GPVA 1Q08A 3Q3DA 5I41B 1Q09A 3Q5SA 2KVVA 3EZFA 2DG6A 3EZ7A 3IAOA 4WLWA 4DCZA 1Q07A 2VZ4A 1R8EA 3EZ9A 1Q06A 3EZ2A 3D6ZA 4LHFA 3D71A 1Y6UA 1JBGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5I44 A;  5E01 A;  3Q5P A;  3Q2Y A;  4R24 B;  1Q0A A;  3GP4 A;  4R22 B;  2ZHG A;  3Q5R A;  5D90 A;  1Q05 A;  2JML A;  4WLS A;  1EXJ A;  3UCS A;  3HH0 A;  3D6Y A;  3Q1M A;  2ZHH A;  1R8D A;  5D8C A;  3QAO A;  3D70 A;  4J2N A;  1EXI A;  3GPV A;  1Q08 A;  3Q3D A;  5I41 B;  1Q09 A;  3Q5S A;  3IAO A;  2DG6 A;  2VZ4 A;  4WLW A;  1Q07 A;  1R8E A;  3D6Z A;  4R4E A;  3D71 A;  1Q06 A;  1JBG A; 
#chains in the Genus database with same CATH topology
 5I44 A;  5E01 A;  3Q5P A;  3Q2Y A;  4R24 B;  1Q0A A;  3GP4 A;  1LX8 A;  4R22 B;  2ZHG A;  3Q5R A;  5D90 A;  2OG0 A;  1Q05 A;  2JML A;  4WLS A;  1EXJ A;  3UCS A;  3HH0 A;  3D6Y A;  3Q1M A;  1PM6 A;  2ZHH A;  3EZ6 A;  1RH6 A;  1R8D A;  4R4E A;  5D8C A;  3QAO A;  3D70 A;  4J2N A;  1EXI A;  2IEF A;  3GPV A;  1Q08 A;  3Q3D A;  5I41 B;  1Q09 A;  3Q5S A;  2KVV A;  3EZF A;  2DG6 A;  3EZ7 A;  3IAO A;  4WLW A;  4DCZ A;  1Q07 A;  2VZ4 A;  1R8E A;  3EZ9 A;  1Q06 A;  3EZ2 A;  3D6Z A;  4LHF A;  3D71 A;  1Y6U A;  1JBG A; 
#chains in the Genus database with same CATH homology
 5I44 A;  5E01 A;  3Q5P A;  3Q2Y A;  4R24 B;  1Q0A A;  3GP4 A;  1LX8 A;  4R22 B;  2ZHG A;  3Q5R A;  5D90 A;  2OG0 A;  1Q05 A;  2JML A;  4WLS A;  1EXJ A;  3UCS A;  3HH0 A;  3D6Y A;  3Q1M A;  1PM6 A;  2ZHH A;  3EZ6 A;  1RH6 A;  1R8D A;  4R4E A;  5D8C A;  3QAO A;  3D70 A;  4J2N A;  1EXI A;  2IEF A;  3GPV A;  1Q08 A;  3Q3D A;  5I41 B;  1Q09 A;  3Q5S A;  2KVV A;  3EZF A;  2DG6 A;  3EZ7 A;  3IAO A;  4WLW A;  4DCZ A;  1Q07 A;  2VZ4 A;  1R8E A;  3EZ9 A;  1Q06 A;  3EZ2 A;  3D6Z A;  4LHF A;  3D71 A;  1Y6U A;  1JBG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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