3GPVA

Crystal structure of a transcriptional regulator, merr family from bacillus thuringiensis
Total Genus 36
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
114
structure length
114
Chain Sequence
MYYTIGQVAKMQHLTISQIRYYDKQGLFPFLQRNEKGDRIFNEEALKYLEMILCLKNTGMPIQKIKQFIDWSMEGDSTILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKY
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Transcription regulator
molecule keywords Transcriptional regulator, MerR family
publication title Crystal structure of a transcriptional regulator, MerR family from Bacillus thuringiensis
rcsb
source organism Bacillus thuringiensis serovar konkukian
total genus 36
structure length 114
sequence length 114
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-03-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13411 MerR_1 MerR HTH family regulatory protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1660.10 Mainly Alpha Orthogonal Bundle Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 3gpvA00
2VZ4A 3Q2YA 4WLWA 3D6ZA 4R4EA 4R22B 1Q0AA 2ZHHA 1JBGA 3D70A 1R8EA 3Q5RA 3Q1MA 1EXJA 2ZHGA 3D71A 2JMLA 4R24B 3D6YA 2DG6A 4J2NA 3GP4A 1Q07A 1Q09A 3IAOA 3Q5SA 1R8DA 3QAOA 3Q5PA 1Q05A 3GPVA 5I41B 3UCSA 5D8CA 5I44A 1EXIA 1Q08A 1Q06A 3HH0A 4WLSA 5E01A 5D90A 3Q3DA
chains in the Genus database with same CATH superfamily
1LX8A 2VZ4A 3Q2YA 1RH6A 4WLWA 3D6ZA 4R4EA 4R22B 1Q0AA 2ZHHA 1JBGA 3EZ7A 3D70A 4LHFA 1R8EA 3Q5RA 3EZ2A 3Q1MA 1EXJA 2ZHGA 3D71A 2JMLA 4R24B 3D6YA 2IEFA 2DG6A 3GP4A 4J2NA 1Q07A 1Q09A 3IAOA 1PM6A 3Q5SA 1R8DA 3QAOA 3Q5PA 4DCZA 1Q05A 3GPVA 3EZFA 3UCSA 5I41B 5D8CA 2OG0A 5I44A 1EXIA 1Q08A 1Q06A 3HH0A 4WLSA 5E01A 5D90A 3EZ6A 3EZ9A 3Q3DA 2KVVA 1Y6UA
chains in the Genus database with same CATH topology
1LX8A 2VZ4A 3Q2YA 1RH6A 4WLWA 3D6ZA 4R4EA 4R22B 1Q0AA 2ZHHA 1JBGA 3EZ7A 3D70A 4LHFA 1R8EA 3Q5RA 3EZ2A 3Q1MA 1EXJA 2ZHGA 3D71A 2JMLA 4R24B 3D6YA 2IEFA 2DG6A 3GP4A 4J2NA 1Q07A 1Q09A 3IAOA 1PM6A 3Q5SA 1R8DA 3QAOA 3Q5PA 4DCZA 1Q05A 3GPVA 3EZFA 3UCSA 5I41B 5D8CA 2OG0A 5I44A 1EXIA 1Q08A 1Q06A 3HH0A 4WLSA 5E01A 5D90A 3EZ6A 3EZ9A 3Q3DA 2KVVA 1Y6UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VZ4 A;  3Q2Y A;  4WLW A;  3D6Z A;  4R4E A;  4R22 B;  1Q0A A;  2ZHH A;  1JBG A;  3D70 A;  1R8E A;  3Q5R A;  3Q1M A;  1EXJ A;  2ZHG A;  3D71 A;  2JML A;  4R24 B;  3D6Y A;  2DG6 A;  4J2N A;  3GP4 A;  1Q07 A;  1Q09 A;  3IAO A;  3Q5S A;  1R8D A;  3QAO A;  3Q5P A;  1Q05 A;  3GPV A;  5I41 B;  3UCS A;  5D8C A;  5I44 A;  1EXI A;  1Q08 A;  1Q06 A;  3HH0 A;  4WLS A;  5E01 A;  5D90 A;  3Q3D A; 
#chains in the Genus database with same CATH topology
 1LX8 A;  2VZ4 A;  3Q2Y A;  1RH6 A;  4WLW A;  3D6Z A;  4R4E A;  4R22 B;  1Q0A A;  2ZHH A;  1JBG A;  3EZ7 A;  3D70 A;  4LHF A;  1R8E A;  3Q5R A;  3EZ2 A;  3Q1M A;  1EXJ A;  2ZHG A;  3D71 A;  2JML A;  4R24 B;  3D6Y A;  2IEF A;  2DG6 A;  3GP4 A;  4J2N A;  1Q07 A;  1Q09 A;  3IAO A;  1PM6 A;  3Q5S A;  1R8D A;  3QAO A;  3Q5P A;  4DCZ A;  1Q05 A;  3GPV A;  3EZF A;  3UCS A;  5I41 B;  5D8C A;  2OG0 A;  5I44 A;  1EXI A;  1Q08 A;  1Q06 A;  3HH0 A;  4WLS A;  5E01 A;  5D90 A;  3EZ6 A;  3EZ9 A;  3Q3D A;  2KVV A;  1Y6U A; 
#chains in the Genus database with same CATH homology
 1LX8 A;  2VZ4 A;  3Q2Y A;  1RH6 A;  4WLW A;  3D6Z A;  4R4E A;  4R22 B;  1Q0A A;  2ZHH A;  1JBG A;  3EZ7 A;  3D70 A;  4LHF A;  1R8E A;  3Q5R A;  3EZ2 A;  3Q1M A;  1EXJ A;  2ZHG A;  3D71 A;  2JML A;  4R24 B;  3D6Y A;  2IEF A;  2DG6 A;  3GP4 A;  4J2N A;  1Q07 A;  1Q09 A;  3IAO A;  1PM6 A;  3Q5S A;  1R8D A;  3QAO A;  3Q5P A;  4DCZ A;  1Q05 A;  3GPV A;  3EZF A;  3UCS A;  5I41 B;  5D8C A;  2OG0 A;  5I44 A;  1EXI A;  1Q08 A;  1Q06 A;  3HH0 A;  4WLS A;  5E01 A;  5D90 A;  3EZ6 A;  3EZ9 A;  3Q3D A;  2KVV A;  1Y6U A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...