3GQOA

Crystal structure of macro domain of venezuelan equine encephalitis virus in complex with adp-ribose
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
161
structure length
161
Chain Sequence
KAPSYHVVRGDIATATEGVIINAANSKGQPGGGVCGALYKKFPESFDLQPIEVGKARLVKGAAKHIIHAVGPNFNKVSEVEGDKQLAEAYESIAKIVNDNNYKSVAIPLLSTGIFSGNKDRLTQSLNHLLTALDTTDADVAIYCRDKKWEMTLKEAVARRE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein
molecule keywords Non-structural protein 3
publication title The crystal structures of Chikungunya and Venezuelan equine encephalitis virus nsP3 macro domains define a conserved adenosine binding pocket
pubmed doi rcsb
source organism Venezuelan equine encephalitis virus
total genus 51
structure length 161
sequence length 161
chains with identical sequence B, C, D
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 2009-03-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01661 Macro Macro domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.220.10 Alpha Beta 3-Layer(aba) Sandwich Leucine Aminopeptidase, subunit E; domain 1 Leucine Aminopeptidase, subunit E, domain 1 3gqoA00
2VRIA 4TU0A 1LCPA 3IIFA 5CMSA 4R6TA 4JVVA 5FSZA 3ETIA 2L8RA 3EW5A 4R76A 4JLLA 4J5SA 3SIJA 5E3BA 3SIHA 3EKEA 4GVWA 4J4ZA 3EWOA 5FSXA 3GQOA 2FXKA 1BLLE 2BFQA 5HIHA 4ABLA 4JGKA 3EWPA 3Q6ZA 3T8WA 1SPVA 4ZX8A 1BPNA 4KSIA 2LGRA 5D8NA 3KQXA 4ZY1A 3EWQA 1BPMA 1GYTA 4D86A 4J5QA 3EWRA 3KZWA 4K0CA 3EJGA 1LAPA 3V45A 4ABKA 3VFQA 4ESSA 3IJ3A 3GPOA 4JCAA 4J5RA 4ZY0A 4GVVA 2EWBA 4ZYQA 4GUAA 4ZI6A 3JZTA 2X47A 3EJFA 4ZY2A 3KQZA 4K3NA 3Q71A 5CB3A 4KYBA 1TY8A 5CBMA 3H8GA 2AFCA 5FSUA 5HOLA 3H8FA 3SIIA 4ETJA 5FSYA 3KR4A 2FG1A 1NJRA 3GPGA 1ZR3A 3V2BA 1ZR5A 2ACFA 3SIGA 1HJZA 2XD7A 3JRUA 4R7MA 1YD9A 1VHUA 3PEIA 2EEEA 1TXZA 3H8EA 3KR5A 4UMLA 3GPQA 5CB5A 4ZX9A 2FAVA 1LAMA 3GQEA 5FSVA 4IQYA 3IIDA 4X2TA 1LANA 2DX6A 2BFRA 2J9AA 5DUSA 4ETKA 5AILA
chains in the Genus database with same CATH superfamily
2VRIA 4TU0A 1LCPA 3IIFA 5CMSA 4R6TA 4JVVA 5FSZA 3ETIA 2L8RA 3EW5A 4R76A 4JLLA 4J5SA 3SIJA 5E3BA 3SIHA 3EKEA 4GVWA 4J4ZA 3EWOA 5FSXA 3GQOA 2FXKA 2KQVA 1BLLE 2BFQA 5HIHA 4ABLA 4JGKA 3EWPA 3Q6ZA 3T8WA 1SPVA 4ZX8A 1BPNA 4KSIA 2LGRA 5D8NA 3KQXA 4ZY1A 3EWQA 1BPMA 1GYTA 4D86A 4J5QA 3EWRA 3KZWA 4K0CA 3EJGA 1LAPA 3V45A 4ABKA 3VFQA 4ESSA 3IJ3A 3GPOA 4JCAA 2RNKA 4J5RA 4ZY0A 4GVVA 2EWBA 4ZYQA 4GUAA 4ZI6A 3JZTA 2X47A 3EJFA 4ZY2A 3KQZA 4K3NA 3Q71A 2WCTA 5CB3A 4KYBA 1TY8A 5CBMA 2JZFA 3H8GA 2AFCA 5FSUA 5HOLA 3H8FA 3SIIA 2JZDA 4ETJA 2W2GA 5FSYA 3KR4A 2FG1A 1NJRA 3GPGA 1ZR3A 3V2BA 1ZR5A 2ACFA 3SIGA 1HJZA 2XD7A 3JRUA 4R7MA 1YD9A 1VHUA 3PEIA 2EEEA 1TXZA 2JZEA 3H8EA 3KR5A 4UMLA 3GPQA 5CB5A 4ZX9A 2FAVA 1LAMA 3GQEA 5FSVA 4IQYA 3IIDA 4X2TA 1LANA 2DX6A 2BFRA 2J9AA 5DUSA 4ETKA 5AILA
chains in the Genus database with same CATH topology
2VRIA 4TU0A 1LCPA 3IIFA 5CMSA 4R6TA 4JVVA 5FSZA 3ETIA 2L8RA 3EW5A 4R76A 4JLLA 4J5SA 3SIJA 5E3BA 3SIHA 3EKEA 4GVWA 4J4ZA 3EWOA 5FSXA 3GQOA 2FXKA 1BLLE 2BFQA 5HIHA 4ABLA 4JGKA 3EWPA 3Q6ZA 3T8WA 1SPVA 4ZX8A 1BPNA 4KSIA 2LGRA 5D8NA 3KQXA 4ZY1A 3EWQA 1BPMA 1GYTA 4D86A 4J5QA 3EWRA 3KZWA 4K0CA 3EJGA 1LAPA 3V45A 4ABKA 3VFQA 4ESSA 3IJ3A 3GPOA 4JCAA 4J5RA 4ZY0A 4GVVA 2EWBA 4ZYQA 4GUAA 4ZI6A 3JZTA 2X47A 3EJFA 4ZY2A 3KQZA 4K3NA 3Q71A 5CB3A 4KYBA 1TY8A 5CBMA 3H8GA 2AFCA 5FSUA 5HOLA 3H8FA 3SIIA 4ETJA 5FSYA 3KR4A 2FG1A 1NJRA 3GPGA 1ZR3A 3V2BA 1ZR5A 2ACFA 3SIGA 1HJZA 2XD7A 3JRUA 4R7MA 1YD9A 1VHUA 3PEIA 2EEEA 1TXZA 3H8EA 3KR5A 4UMLA 3GPQA 5CB5A 4ZX9A 2FAVA 1LAMA 3GQEA 5FSVA 4IQYA 3IIDA 4X2TA 1LANA 2DX6A 2BFRA 2J9AA 5DUSA 4ETKA 5AILA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VRI A;  4TU0 A;  1LCP A;  3IIF A;  5CMS A;  4R6T A;  4JVV A;  5FSZ A;  3ETI A;  2L8R A;  3EW5 A;  4R76 A;  4JLL A;  4J5S A;  3SIJ A;  5E3B A;  3SIH A;  3EKE A;  4GVW A;  4J4Z A;  3EWO A;  5FSX A;  3GQO A;  2FXK A;  1BLL E;  2BFQ A;  5HIH A;  4ABL A;  4JGK A;  3EWP A;  3Q6Z A;  3T8W A;  1SPV A;  4ZX8 A;  1BPN A;  4KSI A;  2LGR A;  5D8N A;  3KQX A;  4ZY1 A;  3EWQ A;  1BPM A;  1GYT A;  4D86 A;  4J5Q A;  3EWR A;  3KZW A;  4K0C A;  3EJG A;  1LAP A;  3V45 A;  4ABK A;  3VFQ A;  4ESS A;  3IJ3 A;  3GPO A;  4JCA A;  4J5R A;  4ZY0 A;  4GVV A;  2EWB A;  4ZYQ A;  4GUA A;  4ZI6 A;  3JZT A;  2X47 A;  3EJF A;  4ZY2 A;  3KQZ A;  4K3N A;  3Q71 A;  5CB3 A;  4KYB A;  1TY8 A;  5CBM A;  3H8G A;  2AFC A;  5FSU A;  5HOL A;  3H8F A;  3SII A;  4ETJ A;  5FSY A;  3KR4 A;  2FG1 A;  1NJR A;  3GPG A;  1ZR3 A;  3V2B A;  1ZR5 A;  2ACF A;  3SIG A;  1HJZ A;  2XD7 A;  3JRU A;  4R7M A;  1YD9 A;  1VHU A;  3PEI A;  2EEE A;  1TXZ A;  3H8E A;  3KR5 A;  4UML A;  3GPQ A;  5CB5 A;  4ZX9 A;  2FAV A;  1LAM A;  3GQE A;  5FSV A;  4IQY A;  3IID A;  4X2T A;  1LAN A;  2DX6 A;  2BFR A;  2J9A A;  5DUS A;  4ETK A;  5AIL A; 
#chains in the Genus database with same CATH topology
 2VRI A;  4TU0 A;  1LCP A;  3IIF A;  5CMS A;  4R6T A;  4JVV A;  5FSZ A;  3ETI A;  2L8R A;  3EW5 A;  4R76 A;  4JLL A;  4J5S A;  3SIJ A;  5E3B A;  3SIH A;  3EKE A;  4GVW A;  4J4Z A;  3EWO A;  5FSX A;  3GQO A;  2FXK A;  2KQV A;  1BLL E;  2BFQ A;  5HIH A;  4ABL A;  4JGK A;  3EWP A;  3Q6Z A;  3T8W A;  1SPV A;  4ZX8 A;  1BPN A;  4KSI A;  2LGR A;  5D8N A;  3KQX A;  4ZY1 A;  3EWQ A;  1BPM A;  1GYT A;  4D86 A;  4J5Q A;  3EWR A;  3KZW A;  4K0C A;  3EJG A;  1LAP A;  3V45 A;  4ABK A;  3VFQ A;  4ESS A;  3IJ3 A;  3GPO A;  4JCA A;  2RNK A;  4J5R A;  4ZY0 A;  4GVV A;  2EWB A;  4ZYQ A;  4GUA A;  4ZI6 A;  3JZT A;  2X47 A;  3EJF A;  4ZY2 A;  3KQZ A;  4K3N A;  3Q71 A;  2WCT A;  5CB3 A;  4KYB A;  1TY8 A;  5CBM A;  2JZF A;  3H8G A;  2AFC A;  5FSU A;  5HOL A;  3H8F A;  3SII A;  2JZD A;  4ETJ A;  2W2G A;  5FSY A;  3KR4 A;  2FG1 A;  1NJR A;  3GPG A;  1ZR3 A;  3V2B A;  1ZR5 A;  2ACF A;  3SIG A;  1HJZ A;  2XD7 A;  3JRU A;  4R7M A;  1YD9 A;  1VHU A;  3PEI A;  2EEE A;  1TXZ A;  2JZE A;  3H8E A;  3KR5 A;  4UML A;  3GPQ A;  5CB5 A;  4ZX9 A;  2FAV A;  1LAM A;  3GQE A;  5FSV A;  4IQY A;  3IID A;  4X2T A;  1LAN A;  2DX6 A;  2BFR A;  2J9A A;  5DUS A;  4ETK A;  5AIL A; 
#chains in the Genus database with same CATH homology
 2VRI A;  4TU0 A;  1LCP A;  3IIF A;  5CMS A;  4R6T A;  4JVV A;  5FSZ A;  3ETI A;  2L8R A;  3EW5 A;  4R76 A;  4JLL A;  4J5S A;  3SIJ A;  5E3B A;  3SIH A;  3EKE A;  4GVW A;  4J4Z A;  3EWO A;  5FSX A;  3GQO A;  2FXK A;  1BLL E;  2BFQ A;  5HIH A;  4ABL A;  4JGK A;  3EWP A;  3Q6Z A;  3T8W A;  1SPV A;  4ZX8 A;  1BPN A;  4KSI A;  2LGR A;  5D8N A;  3KQX A;  4ZY1 A;  3EWQ A;  1BPM A;  1GYT A;  4D86 A;  4J5Q A;  3EWR A;  3KZW A;  4K0C A;  3EJG A;  1LAP A;  3V45 A;  4ABK A;  3VFQ A;  4ESS A;  3IJ3 A;  3GPO A;  4JCA A;  4J5R A;  4ZY0 A;  4GVV A;  2EWB A;  4ZYQ A;  4GUA A;  4ZI6 A;  3JZT A;  2X47 A;  3EJF A;  4ZY2 A;  3KQZ A;  4K3N A;  3Q71 A;  5CB3 A;  4KYB A;  1TY8 A;  5CBM A;  3H8G A;  2AFC A;  5FSU A;  5HOL A;  3H8F A;  3SII A;  4ETJ A;  5FSY A;  3KR4 A;  2FG1 A;  1NJR A;  3GPG A;  1ZR3 A;  3V2B A;  1ZR5 A;  2ACF A;  3SIG A;  1HJZ A;  2XD7 A;  3JRU A;  4R7M A;  1YD9 A;  1VHU A;  3PEI A;  2EEE A;  1TXZ A;  3H8E A;  3KR5 A;  4UML A;  3GPQ A;  5CB5 A;  4ZX9 A;  2FAV A;  1LAM A;  3GQE A;  5FSV A;  4IQY A;  3IID A;  4X2T A;  1LAN A;  2DX6 A;  2BFR A;  2J9A A;  5DUS A;  4ETK A;  5AIL A; 
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similar chains in the Genus database (?% sequence similarity)
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