3GRHA

Crystal structure of escherichia coli ybhc
Total Genus 139
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
139
sequence length
397
structure length
397
Chain Sequence
b'YFQSMQRPSDQTAPGTSSRPILSAKEAQNFDAQHYFASLTPGAAAWNPSPITLPAQPDFVVGPAGTQGVTHTTIQAAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPADWRHDVNPRGKYMPGKPAWYMYDSCQSKRSDSIGVLCSAVFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDQVQINNVNILGRQNTFFVTNSGVQNRLETNRQPRTLVTNSYIEGDVDIVSGRGAVVFDNTEFRVVNSRTQQEAYVFAPATLSNIYYGFLAVNSRFNAFGDGVAQLGRSLDVDANTNGQVVIRDSAINEGFNTAKPWADAVISNRPFAGNTGSVDDNDEIQRNLNDTNYNRMWEYNNRGVGSK'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Acyl-CoA thioester hydrolase ybgC
publication title The crystal structure of the outer membrane lipoprotein YbhC from Escherichia coli sheds new light on the phylogeny of carbohydrate esterase family 8.
pubmed doi rcsb
source organism Escherichia coli k-12
molecule tags Hydrolase
total genus 139
structure length 397
sequence length 397
ec nomenclature
pdb deposition date 2009-03-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01095 Pectinesterase Pectinesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 3grhA00
1GQ8A 2NT6A 2X6XA 3B4NA 1OFLA 3ZPPA 1JRGA 1RU4A 4C2LA 4OJ5A 4YZAA 2O1DA 1O8KA 3GQ8A 1O8EA 2VJJA 3GQ7A 1DBGA 3GQAA 2INVA 1O88A 1OFMA 2NSTA 4MR0A 1IDKA 4OZYA 4XMYA 2IQ7A 2PYHA 2O04A 2QY1A 4W8TA 1AIRA 4I84A 1IA5A 1CZFA 1KCDA 4XLFA 1O8HA 4Z03A 4XN0A 2NTBA 4XKVA 1PE9A 2X6YA 4YZ0A 2QXZA 3VSUA 4MXNA 1DBOA 2NTQA 5C1CA 1BHEA 1K5CA 2NT9A 4NK8A 3EQNA 3FY3A 4XLAA 2X85A 3B8YA 2PECA 3B90A 1VBLA 1O8FA 2UVEA 1O8LA 2ODLA 2EWEA 3VSTA 3UW0A 3LMWA 1JTAA 3T9GA 4OZZA 2Z8GA 3VSVA 1HG8A 1QCXA 1NHCA 3GRHA 1RWRA 1IB4A 1EE6A 4OJ6A 4XOTA 4XM3A 2X6WA 4HWVA 2NZMA 4XL9A 1OGOX 3VMVA 4XKWA 2INUA 4XLHA 1KTWA 4XONA 4XOPA 1WMRA 3GQ9A 4NK6A 2O0VA 3VMWA 5AMVA 3KRGA 2NTPA 4PMHA 1PLUA 3SUCA 1KCCA 1OGMX 3ZSCA 5C1EA 2NSPA 4Z05A 1BN8A 2VJIA 4XLCA 1QJVA 4Z06A 2BSPA 3JURA 4YZXA 1O8GA 4YEJA 1H80A 4W8QA 1XG2A 4W8SA 3EQOA 1PXZA 1RMGA 1X0CA 2VBMA 2O0WA 4XLEA 3WWGA 2O17A 4OJOA 1O8JA 4W8RA 4U4BA 1OOCA 4XORA 4YELA 2VBEA 1O8DA 4U49A 1O8MA 4OJLA 1IDJA 4XNFA 4YZQA 2X3HA 2QX3A 1O8IA 2UVFA 4OJPA 4AVZA 4XN3A 2PYGA 2VBKA 4XR6A 4XQFA 4URRA 4EW9A
chains in the Genus database with same CATH superfamily
2BM4A 3NAWA 3RIQA 1GQ8A 2NT6A 2X6XA 3SZEA 3B4NA 1OFLA 3ZPPA 1QA2A 1JRGA 2XTYA 1RU4A 4C2LA 4OJ5A 4KH3A 4YZAA 1EZGA 2O1DA 1O8KA 3GQ8A 1O8EA 2VJJA 4YFOA 3GQ7A 1DBGA 5DNSA 3GQAA 2INVA 1O88A 1OFMA 2QYUA 2NSTA 4MR0A 2VFQA 1IDKA 1TSPA 4OZYA 2BM7A 2IQ7A 2PYHA 2O04A 2QY1A 3LJYA 2BX6A 4XMYA 4W8TA 1AIRA 4I84A 1IA5A 1CZFA 4YC5A 1KCDA 3AK5A 4XLFA 1O8HA 3ML3A 4Z03A 4XN0A 2NTBA 4XKVA 3PSZA 1PE9A 3SQVA 2X6YA 4YZ0A 2QXZA 3VSUA 3N6ZA 4MXNA 1TYXA 3TH0A 1KQ5A 1DBOA 3H09A 2NTQA 5C1CA 2VFPA 4OPWA 1BHEA 2BM5A 1K5CA 3N90A 2NT9A 4NK8A 2IOUG 1TYVA 2J8IA 4YDTA 3EQNA 3FY3A 4XLAA 2W7ZA 2X85A 3B8YA 2PECA 1K4ZA 2YUHA 3B90A 1VBLA 1O8FA 2UVEA 1O8LA 1LM1A 2ODLA 2EWEA 1TYUA 3VSTA 3UW0A 3LMWA 1JTAA 3T9GA 1HF2A 4OZZA 2Z8GA 1K8FA 3VSVA 3P4GA 1HG8A 1QCXA 1CLWA 1NHCA 3GRHA 1RWRA 1IB4A 2XT4A 2BM6A 1L1IA 1EE6A 1QRBA 4OJ6A 4XOTA 4XM3A 2X6WA 4YCQA 4HWVA 4YEIA 2NZMA 4XL9A 1OGOX 1QA3A 3VMVA 4XKWA 2INUA 4XLHA 1KTWA 3PSSA 4XONA 4XOPA 2VFNA 1WMRA 3GQ9A 4NK6A 2O0VA 2O6WA 3VMWA 2VFOA 5AMVA 3KRGA 3NB2A 2NTPA 4PMHA 1PLUA 3SY2A 1OFDA 3BH7B 3SUCA 3LYCA 1KCCA 1OGMX 1OFEA 5JLVC 3ZSCA 5C1EA 2NSPA 2F3LA 1LLWA 2VFMA 4Z05A 3SYJA 1BN8A 2VJIA 4V02C 1QJVA 4XLCA 4Z06A 2BSPA 3JURA 4YZXA 1QA1A 1O8GA 2XTWA 4YEJA 2G0YA 1H80A 4W8QA 1XG2A 4OM9A 4W8SA 3EQOA 1PXZA 1QRCA 1RMGA 1X0CA 2VBMA 2O0WA 4JRAC 4XLEA 1DABA 3WWGA 3DU1X 2O17A 4OJOA 1EA0A 1O8JA 3BH6B 4W8RA 1QQ1A 2B0RA 4U4BA 3PETA 1OOCA 4XORA 4YELA 2XTXA 2VBEA 2XC1A 1O8DA 4U49A 1O8MA 4OJLA 1LLZA 1WXRA 1IDJA 4XNFA 4YZQA 2X3HA 1TYWA 2QX3A 2QZAA 1O8IA 2UVFA 4OJPA 4AVZA 2V5IA 4XN3A 3JX8A 2PYGA 2VBKA 2XT2A 4XR6A 5JMCB 4XQFA 4URRA 4EW9A 2J8KA
chains in the Genus database with same CATH topology
1GQ8A 2NT6A 2X6XA 3B4NA 1OFLA 3ZPPA 1JRGA 1RU4A 4C2LA 4OJ5A 4YZAA 2O1DA 1O8KA 3GQ8A 1O8EA 2VJJA 3GQ7A 1DBGA 3GQAA 2INVA 1O88A 1OFMA 2NSTA 4MR0A 1IDKA 4OZYA 4XMYA 2IQ7A 2PYHA 2O04A 2QY1A 4W8TA 1AIRA 4I84A 1IA5A 1CZFA 1KCDA 4XLFA 1O8HA 4Z03A 4XN0A 2NTBA 4XKVA 1PE9A 2X6YA 4YZ0A 2QXZA 3VSUA 4MXNA 1DBOA 2NTQA 5C1CA 1BHEA 1K5CA 2NT9A 4NK8A 3EQNA 3FY3A 4XLAA 2X85A 3B8YA 2PECA 3B90A 1VBLA 1O8FA 2UVEA 1O8LA 2ODLA 2EWEA 3VSTA 3UW0A 3LMWA 1JTAA 3T9GA 4OZZA 2Z8GA 3VSVA 1HG8A 1QCXA 1NHCA 3GRHA 1RWRA 1IB4A 1EE6A 4OJ6A 4XOTA 4XM3A 2X6WA 4HWVA 2NZMA 4XL9A 1OGOX 3VMVA 4XKWA 2INUA 4XLHA 1KTWA 4XONA 4XOPA 1WMRA 3GQ9A 4NK6A 2O0VA 3VMWA 5AMVA 3KRGA 2NTPA 4PMHA 1PLUA 3SUCA 1KCCA 1OGMX 3ZSCA 5C1EA 2NSPA 4Z05A 1BN8A 2VJIA 4XLCA 1QJVA 4Z06A 2BSPA 3JURA 4YZXA 1O8GA 4YEJA 1H80A 4W8QA 1XG2A 4W8SA 3EQOA 1PXZA 1RMGA 1X0CA 2VBMA 2O0WA 4XLEA 3WWGA 2O17A 4OJOA 1O8JA 4W8RA 4U4BA 1OOCA 4XORA 4YELA 2VBEA 1O8DA 4U49A 1O8MA 4OJLA 1IDJA 4XNFA 4YZQA 2X3HA 2QX3A 1O8IA 2UVFA 4OJPA 4AVZA 4XN3A 2PYGA 2VBKA 4XR6A 4XQFA 4URRA 4EW9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GQ8 A;  2NT6 A;  2X6X A;  3B4N A;  1OFL A;  3ZPP A;  1JRG A;  1RU4 A;  4C2L A;  4OJ5 A;  4YZA A;  2O1D A;  1O8K A;  3GQ8 A;  1O8E A;  2VJJ A;  3GQ7 A;  1DBG A;  3GQA A;  2INV A;  1O88 A;  1OFM A;  2NST A;  4MR0 A;  1IDK A;  4OZY A;  4XMY A;  2IQ7 A;  2PYH A;  2O04 A;  2QY1 A;  4W8T A;  1AIR A;  4I84 A;  1IA5 A;  1CZF A;  1KCD A;  4XLF A;  1O8H A;  4Z03 A;  4XN0 A;  2NTB A;  4XKV A;  1PE9 A;  2X6Y A;  4YZ0 A;  2QXZ A;  3VSU A;  4MXN A;  1DBO A;  2NTQ A;  5C1C A;  1BHE A;  1K5C A;  2NT9 A;  4NK8 A;  3EQN A;  3FY3 A;  4XLA A;  2X85 A;  3B8Y A;  2PEC A;  3B90 A;  1VBL A;  1O8F A;  2UVE A;  1O8L A;  2ODL A;  2EWE A;  3VST A;  3UW0 A;  3LMW A;  1JTA A;  3T9G A;  4OZZ A;  2Z8G A;  3VSV A;  1HG8 A;  1QCX A;  1NHC A;  3GRH A;  1RWR A;  1IB4 A;  1EE6 A;  4OJ6 A;  4XOT A;  4XM3 A;  2X6W A;  4HWV A;  2NZM A;  4XL9 A;  1OGO X;  3VMV A;  4XKW A;  2INU A;  4XLH A;  1KTW A;  4XON A;  4XOP A;  1WMR A;  3GQ9 A;  4NK6 A;  2O0V A;  3VMW A;  5AMV A;  3KRG A;  2NTP A;  4PMH A;  1PLU A;  3SUC A;  1KCC A;  1OGM X;  3ZSC A;  5C1E A;  2NSP A;  4Z05 A;  1BN8 A;  2VJI A;  4XLC A;  1QJV A;  4Z06 A;  2BSP A;  3JUR A;  4YZX A;  1O8G A;  4YEJ A;  1H80 A;  4W8Q A;  1XG2 A;  4W8S A;  3EQO A;  1PXZ A;  1RMG A;  1X0C A;  2VBM A;  2O0W A;  4XLE A;  3WWG A;  2O17 A;  4OJO A;  1O8J A;  4W8R A;  4U4B A;  1OOC A;  4XOR A;  4YEL A;  2VBE A;  1O8D A;  4U49 A;  1O8M A;  4OJL A;  1IDJ A;  4XNF A;  4YZQ A;  2X3H A;  2QX3 A;  1O8I A;  2UVF A;  4OJP A;  4AVZ A;  4XN3 A;  2PYG A;  2VBK A;  4XR6 A;  4XQF A;  4URR A;  4EW9 A; 
#chains in the Genus database with same CATH topology
 2BM4 A;  3NAW A;  3RIQ A;  1GQ8 A;  2NT6 A;  2X6X A;  3SZE A;  3B4N A;  1OFL A;  3ZPP A;  1QA2 A;  1JRG A;  2XTY A;  1RU4 A;  4C2L A;  4OJ5 A;  4KH3 A;  4YZA A;  1EZG A;  2O1D A;  1O8K A;  3GQ8 A;  1O8E A;  2VJJ A;  4YFO A;  3GQ7 A;  1DBG A;  5DNS A;  3GQA A;  2INV A;  1O88 A;  1OFM A;  2QYU A;  2NST A;  4MR0 A;  2VFQ A;  1IDK A;  1TSP A;  4OZY A;  2BM7 A;  2IQ7 A;  2PYH A;  2O04 A;  2QY1 A;  3LJY A;  2BX6 A;  4XMY A;  4W8T A;  1AIR A;  4I84 A;  1IA5 A;  1CZF A;  4YC5 A;  1KCD A;  3AK5 A;  4XLF A;  1O8H A;  3ML3 A;  4Z03 A;  4XN0 A;  2NTB A;  4XKV A;  3PSZ A;  1PE9 A;  3SQV A;  2X6Y A;  4YZ0 A;  2QXZ A;  3VSU A;  3N6Z A;  4MXN A;  1TYX A;  3TH0 A;  1KQ5 A;  1DBO A;  3H09 A;  2NTQ A;  5C1C A;  2VFP A;  4OPW A;  1BHE A;  2BM5 A;  1K5C A;  3N90 A;  2NT9 A;  4NK8 A;  2IOU G;  1TYV A;  2J8I A;  4YDT A;  3EQN A;  3FY3 A;  4XLA A;  2W7Z A;  2X85 A;  3B8Y A;  2PEC A;  1K4Z A;  2YUH A;  3B90 A;  1VBL A;  1O8F A;  2UVE A;  1O8L A;  1LM1 A;  2ODL A;  2EWE A;  1TYU A;  3VST A;  3UW0 A;  3LMW A;  1JTA A;  3T9G A;  1HF2 A;  4OZZ A;  2Z8G A;  1K8F A;  3VSV A;  3P4G A;  1HG8 A;  1QCX A;  1CLW A;  1NHC A;  3GRH A;  1RWR A;  1IB4 A;  2XT4 A;  2BM6 A;  1L1I A;  1EE6 A;  1QRB A;  4OJ6 A;  4XOT A;  4XM3 A;  2X6W A;  4YCQ A;  4HWV A;  4YEI A;  2NZM A;  4XL9 A;  1OGO X;  1QA3 A;  3VMV A;  4XKW A;  2INU A;  4XLH A;  1KTW A;  3PSS A;  4XON A;  4XOP A;  2VFN A;  1WMR A;  3GQ9 A;  4NK6 A;  2O0V A;  2O6W A;  3VMW A;  2VFO A;  5AMV A;  3KRG A;  3NB2 A;  2NTP A;  4PMH A;  1PLU A;  3SY2 A;  1OFD A;  3BH7 B;  3SUC A;  3LYC A;  1KCC A;  1OGM X;  1OFE A;  5JLV C;  3ZSC A;  5C1E A;  2NSP A;  2F3L A;  1LLW A;  2VFM A;  4Z05 A;  3SYJ A;  1BN8 A;  2VJI A;  4V02 C;  1QJV A;  4XLC A;  4Z06 A;  2BSP A;  3JUR A;  4YZX A;  1QA1 A;  1O8G A;  2XTW A;  4YEJ A;  2G0Y A;  1H80 A;  4W8Q A;  1XG2 A;  4OM9 A;  4W8S A;  3EQO A;  1PXZ A;  1QRC A;  1RMG A;  1X0C A;  2VBM A;  2O0W A;  4JRA C;  4XLE A;  1DAB A;  3WWG A;  3DU1 X;  2O17 A;  4OJO A;  1EA0 A;  1O8J A;  3BH6 B;  4W8R A;  1QQ1 A;  2B0R A;  4U4B A;  3PET A;  1OOC A;  4XOR A;  4YEL A;  2XTX A;  2VBE A;  2XC1 A;  1O8D A;  4U49 A;  1O8M A;  4OJL A;  1LLZ A;  1WXR A;  1IDJ A;  4XNF A;  4YZQ A;  2X3H A;  1TYW A;  2QX3 A;  2QZA A;  1O8I A;  2UVF A;  4OJP A;  4AVZ A;  2V5I A;  4XN3 A;  3JX8 A;  2PYG A;  2VBK A;  2XT2 A;  4XR6 A;  5JMC B;  4XQF A;  4URR A;  4EW9 A;  2J8K A; 
#chains in the Genus database with same CATH homology
 1GQ8 A;  2NT6 A;  2X6X A;  3B4N A;  1OFL A;  3ZPP A;  1JRG A;  1RU4 A;  4C2L A;  4OJ5 A;  4YZA A;  2O1D A;  1O8K A;  3GQ8 A;  1O8E A;  2VJJ A;  3GQ7 A;  1DBG A;  3GQA A;  2INV A;  1O88 A;  1OFM A;  2NST A;  4MR0 A;  1IDK A;  4OZY A;  4XMY A;  2IQ7 A;  2PYH A;  2O04 A;  2QY1 A;  4W8T A;  1AIR A;  4I84 A;  1IA5 A;  1CZF A;  1KCD A;  4XLF A;  1O8H A;  4Z03 A;  4XN0 A;  2NTB A;  4XKV A;  1PE9 A;  2X6Y A;  4YZ0 A;  2QXZ A;  3VSU A;  4MXN A;  1DBO A;  2NTQ A;  5C1C A;  1BHE A;  1K5C A;  2NT9 A;  4NK8 A;  3EQN A;  3FY3 A;  4XLA A;  2X85 A;  3B8Y A;  2PEC A;  3B90 A;  1VBL A;  1O8F A;  2UVE A;  1O8L A;  2ODL A;  2EWE A;  3VST A;  3UW0 A;  3LMW A;  1JTA A;  3T9G A;  4OZZ A;  2Z8G A;  3VSV A;  1HG8 A;  1QCX A;  1NHC A;  3GRH A;  1RWR A;  1IB4 A;  1EE6 A;  4OJ6 A;  4XOT A;  4XM3 A;  2X6W A;  4HWV A;  2NZM A;  4XL9 A;  1OGO X;  3VMV A;  4XKW A;  2INU A;  4XLH A;  1KTW A;  4XON A;  4XOP A;  1WMR A;  3GQ9 A;  4NK6 A;  2O0V A;  3VMW A;  5AMV A;  3KRG A;  2NTP A;  4PMH A;  1PLU A;  3SUC A;  1KCC A;  1OGM X;  3ZSC A;  5C1E A;  2NSP A;  4Z05 A;  1BN8 A;  2VJI A;  4XLC A;  1QJV A;  4Z06 A;  2BSP A;  3JUR A;  4YZX A;  1O8G A;  4YEJ A;  1H80 A;  4W8Q A;  1XG2 A;  4W8S A;  3EQO A;  1PXZ A;  1RMG A;  1X0C A;  2VBM A;  2O0W A;  4XLE A;  3WWG A;  2O17 A;  4OJO A;  1O8J A;  4W8R A;  4U4B A;  1OOC A;  4XOR A;  4YEL A;  2VBE A;  1O8D A;  4U49 A;  1O8M A;  4OJL A;  1IDJ A;  4XNF A;  4YZQ A;  2X3H A;  2QX3 A;  1O8I A;  2UVF A;  4OJP A;  4AVZ A;  4XN3 A;  2PYG A;  2VBK A;  4XR6 A;  4XQF A;  4URR A;  4EW9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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