3GRHA

Crystal structure of escherichia coli ybhc
Total Genus 139
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
139
sequence length
397
structure length
397
Chain Sequence
YFQSMQRPSDQTAPGTSSRPILSAKEAQNFDAQHYFASLTPGAAAWNPSPITLPAQPDFVVGPAGTQGVTHTTIQAAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPADWRHDVNPRGKYMPGKPAWYMYDSCQSKRSDSIGVLCSAVFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDQVQINNVNILGRQNTFFVTNSGVQNRLETNRQPRTLVTNSYIEGDVDIVSGRGAVVFDNTEFRVVNSRTQQEAYVFAPATLSNIYYGFLAVNSRFNAFGDGVAQLGRSLDVDANTNGQVVIRDSAINEGFNTAKPWADAVISNRPFAGNTGSVDDNDEIQRNLNDTNYNRMWEYNNRGVGSK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title The crystal structure of the outer membrane lipoprotein YbhC from Escherichia coli sheds new light on the phylogeny of carbohydrate esterase family 8.
pubmed doi rcsb
source organism Escherichia coli k-12
molecule tags Hydrolase
molecule keywords Acyl-CoA thioester hydrolase ybgC
total genus 139
structure length 397
sequence length 397
ec nomenclature
pdb deposition date 2009-03-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01095 Pectinesterase Pectinesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 3grhA00
3EQOA 4XONA 4XOTA 3UW0A 2NTBA 1QJVA 3VSTA 1DBOA 4YZQA 3GQ9A 1RU4A 2UVEA 1PXZA 2PYGA 1O8EA 1XG2A 5C1EA 1H80A 3VSUA 4MR0A 1PLUA 4MXNA 4OJ5A 5AMVA 2QXZA 1IA5A 4YZ0A 4OJ6A 2BSPA 2VBEA 2VBKA 3GRHA 1KCCA 2EWEA 2VJIA 4C2LA 1EE6A 4XKWA 1O8DA 4W8RA 4OJPA 3KRGA 1OGOX 1AIRA 2NZMA 3GQ7A 3WWGA 1O8FA 4XLEA 1QCXA 3EQNA 3GQ8A 1RMGA 1O88A 1O8JA 2X6WA 4I84A 2NTPA 5C1CA 4Z03A 2QY1A 2O17A 1K5CA 1WMRA 4XR6A 4W8QA 3JURA 4W8SA 1IB4A 4XOPA 4W8TA 2NTQA 1HG8A 2UVFA 2O04A 1OFMA 1VBLA 2X85A 4XM3A 1IDJA 4YZXA 4Z05A 1RWRA 2NT6A 2VJJA 4XORA 3VMWA 3ZPPA 2O1DA 2INVA 4XMYA 3T9GA 3SUCA 2O0VA 1JRGA 1OOCA 3LMWA 1IDKA 1O8GA 4URRA 4YZAA 2X3HA 1O8LA 2PECA 3FY3A 1PE9A 1KTWA 2VBMA 4XNFA 4HWVA 1JTAA 3B4NA 3VMVA 2NT9A 3ZSCA 3GQAA 4OJLA 4EW9A 1O8MA 2NSTA 4YELA 2QX3A 4NK8A 1NHCA 2NSPA 4XLCA 1GQ8A 1OGMX 4XN3A 1BHEA 4XLHA 4XLFA 1X0CA 1O8KA 4AVZA 3VSVA 4Z06A 2X6YA 2Z8GA 4OZYA 2PYHA 2ODLA 1DBGA 4PMHA 4XKVA 4U4BA 4XQFA 1BN8A 4XLAA 2IQ7A 4U49A 1KCDA 4OJOA 4XL9A 1CZFA 2O0WA 1O8HA 1O8IA 3B8YA 4XN0A 2X6XA 4OZZA 2INUA 4YEJA 1OFLA 4NK6A 3B90A
chains in the Genus database with same CATH superfamily
3EQOA 4XONA 4XOTA 3UW0A 3JX8A 3BH7B 2NTBA 1QJVA 3LJYA 3VSTA 1DBOA 1TYVA 4YZQA 1OFEA 3GQ9A 1RU4A 1LM1A 2BM7A 5JMCB 2UVEA 1QRCA 1PXZA 4YFOA 1KQ5A 1OFDA 1QA1A 2PYGA 1O8EA 1XG2A 5C1EA 1H80A 3NB2A 3RIQA 1HF2A 3VSUA 4MR0A 1PLUA 4MXNA 4OJ5A 3SY2A 2VFMA 5AMVA 4JRAC 2QXZA 1IA5A 4YZ0A 4OJ6A 2BSPA 2VBEA 2VBKA 3GRHA 1KCCA 2EWEA 2VJIA 4C2LA 1EE6A 2YUHA 4YEIA 4XKWA 1O8DA 2O6WA 4W8RA 4OJPA 3KRGA 1OGOX 1AIRA 2NZMA 3GQ7A 3WWGA 1O8FA 3BH6B 2BM4A 4XLEA 1QCXA 3EQNA 2F3LA 3GQ8A 1RMGA 1O88A 1O8JA 2VFQA 2X6WA 4I84A 2NTPA 4YDTA 5C1CA 4Z03A 2BX6A 2QY1A 1TYXA 2O17A 1K5CA 2VFOA 1WMRA 4XR6A 2QYUA 4W8QA 1QA3A 3JURA 1WXRA 4W8SA 4YCQA 1IB4A 2J8IA 4XOPA 4W8TA 2NTQA 1HG8A 2IOUG 2UVFA 3DU1X 2O04A 1OFMA 1VBLA 2X85A 4XM3A 1IDJA 2XTXA 3N6ZA 4YZXA 4Z05A 1RWRA 2NT6A 3NAWA 2VJJA 2V5IA 4XORA 3VMWA 1K8FA 3ZPPA 2O1DA 2INVA 4XMYA 3T9GA 2BM5A 3SUCA 2O0VA 1JRGA 1OOCA 2QZAA 2VFNA 3LMWA 1IDKA 2XC1A 1O8GA 1QQ1A 4V02C 3AK5A 4URRA 4YZAA 1LLWA 2X3HA 4OM9A 3SYJA 2BM6A 1O8LA 3PSZA 2PECA 3FY3A 1PE9A 1KTWA 2VBMA 1K4ZA 4HWVA 1JTAA 3B4NA 4XNFA 3P4GA 3LYCA 3VMVA 2NT9A 3ML3A 3GQAA 4OJLA 3SQVA 3ZSCA 2XT4A 5JLVC 1CLWA 2XTYA 4EW9A 1O8MA 2NSTA 4YELA 2QX3A 4NK8A 1TYWA 1NHCA 2NSPA 4XLCA 1GQ8A 1LLZA 1OGMX 4XN3A 2W7ZA 1BHEA 4XLHA 4XLFA 1X0CA 2XTWA 4KH3A 2XT2A 1O8KA 3PETA 4AVZA 3PSSA 3VSVA 1QA2A 4Z06A 1L1IA 2VFPA 2X6YA 2Z8GA 5DNSA 2B0RA 4OZYA 2PYHA 2ODLA 3SZEA 1DBGA 4PMHA 1QRBA 4XKVA 1TSPA 3N90A 4U4BA 1DABA 1EA0A 4XQFA 1BN8A 4XLAA 2IQ7A 4U49A 1KCDA 3TH0A 4OJOA 4XL9A 1CZFA 2O0WA 1O8HA 1O8IA 1TYUA 2J8KA 2G0YA 3B8YA 4OPWA 1EZGA 4XN0A 2X6XA 4YC5A 4OZZA 2INUA 4YEJA 3H09A 1OFLA 4NK6A 3B90A
chains in the Genus database with same CATH topology
3EQOA 4XONA 4XOTA 3UW0A 2NTBA 1QJVA 3VSTA 1DBOA 4YZQA 3GQ9A 1RU4A 2UVEA 1PXZA 2PYGA 1O8EA 1XG2A 5C1EA 1H80A 3VSUA 4MR0A 1PLUA 4MXNA 4OJ5A 5AMVA 2QXZA 1IA5A 4YZ0A 4OJ6A 2BSPA 2VBEA 2VBKA 3GRHA 1KCCA 2EWEA 2VJIA 4C2LA 1EE6A 4XKWA 1O8DA 4W8RA 4OJPA 3KRGA 1OGOX 1AIRA 2NZMA 3GQ7A 3WWGA 1O8FA 4XLEA 1QCXA 3EQNA 3GQ8A 1RMGA 1O88A 1O8JA 2X6WA 4I84A 2NTPA 5C1CA 4Z03A 2QY1A 2O17A 1K5CA 1WMRA 4XR6A 4W8QA 3JURA 4W8SA 1IB4A 4XOPA 4W8TA 2NTQA 1HG8A 2UVFA 2O04A 1OFMA 1VBLA 2X85A 4XM3A 1IDJA 4YZXA 4Z05A 1RWRA 2NT6A 2VJJA 4XORA 3VMWA 3ZPPA 2O1DA 2INVA 4XMYA 3T9GA 3SUCA 2O0VA 1JRGA 1OOCA 3LMWA 1IDKA 1O8GA 4URRA 4YZAA 2X3HA 1O8LA 2PECA 3FY3A 1PE9A 1KTWA 2VBMA 4XNFA 4HWVA 1JTAA 3B4NA 3VMVA 2NT9A 3ZSCA 3GQAA 4OJLA 4EW9A 1O8MA 2NSTA 4YELA 2QX3A 4NK8A 1NHCA 2NSPA 4XLCA 1GQ8A 1OGMX 4XN3A 1BHEA 4XLHA 4XLFA 1X0CA 1O8KA 4AVZA 3VSVA 4Z06A 2X6YA 2Z8GA 4OZYA 2PYHA 2ODLA 1DBGA 4PMHA 4XKVA 4U4BA 4XQFA 1BN8A 4XLAA 2IQ7A 4U49A 1KCDA 4OJOA 4XL9A 1CZFA 2O0WA 1O8HA 1O8IA 3B8YA 4XN0A 2X6XA 4OZZA 2INUA 4YEJA 1OFLA 4NK6A 3B90A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EQO A;  4XON A;  4XOT A;  3UW0 A;  2NTB A;  1QJV A;  3VST A;  1DBO A;  4YZQ A;  3GQ9 A;  1RU4 A;  2UVE A;  1PXZ A;  2PYG A;  1O8E A;  1XG2 A;  5C1E A;  1H80 A;  3VSU A;  4MR0 A;  1PLU A;  4MXN A;  4OJ5 A;  5AMV A;  2QXZ A;  1IA5 A;  4YZ0 A;  4OJ6 A;  2BSP A;  2VBE A;  2VBK A;  3GRH A;  1KCC A;  2EWE A;  2VJI A;  4C2L A;  1EE6 A;  4XKW A;  1O8D A;  4W8R A;  4OJP A;  3KRG A;  1OGO X;  1AIR A;  2NZM A;  3GQ7 A;  3WWG A;  1O8F A;  4XLE A;  1QCX A;  3EQN A;  3GQ8 A;  1RMG A;  1O88 A;  1O8J A;  2X6W A;  4I84 A;  2NTP A;  5C1C A;  4Z03 A;  2QY1 A;  2O17 A;  1K5C A;  1WMR A;  4XR6 A;  4W8Q A;  3JUR A;  4W8S A;  1IB4 A;  4XOP A;  4W8T A;  2NTQ A;  1HG8 A;  2UVF A;  2O04 A;  1OFM A;  1VBL A;  2X85 A;  4XM3 A;  1IDJ A;  4YZX A;  4Z05 A;  1RWR A;  2NT6 A;  2VJJ A;  4XOR A;  3VMW A;  3ZPP A;  2O1D A;  2INV A;  4XMY A;  3T9G A;  3SUC A;  2O0V A;  1JRG A;  1OOC A;  3LMW A;  1IDK A;  1O8G A;  4URR A;  4YZA A;  2X3H A;  1O8L A;  2PEC A;  3FY3 A;  1PE9 A;  1KTW A;  2VBM A;  4XNF A;  4HWV A;  1JTA A;  3B4N A;  3VMV A;  2NT9 A;  3ZSC A;  3GQA A;  4OJL A;  4EW9 A;  1O8M A;  2NST A;  4YEL A;  2QX3 A;  4NK8 A;  1NHC A;  2NSP A;  4XLC A;  1GQ8 A;  1OGM X;  4XN3 A;  1BHE A;  4XLH A;  4XLF A;  1X0C A;  1O8K A;  4AVZ A;  3VSV A;  4Z06 A;  2X6Y A;  2Z8G A;  4OZY A;  2PYH A;  2ODL A;  1DBG A;  4PMH A;  4XKV A;  4U4B A;  4XQF A;  1BN8 A;  4XLA A;  2IQ7 A;  4U49 A;  1KCD A;  4OJO A;  4XL9 A;  1CZF A;  2O0W A;  1O8H A;  1O8I A;  3B8Y A;  4XN0 A;  2X6X A;  4OZZ A;  2INU A;  4YEJ A;  1OFL A;  4NK6 A;  3B90 A; 
#chains in the Genus database with same CATH topology
 3EQO A;  4XON A;  4XOT A;  3UW0 A;  3JX8 A;  3BH7 B;  2NTB A;  1QJV A;  3LJY A;  3VST A;  1DBO A;  1TYV A;  4YZQ A;  1OFE A;  3GQ9 A;  1RU4 A;  1LM1 A;  2BM7 A;  5JMC B;  2UVE A;  1QRC A;  1PXZ A;  4YFO A;  1KQ5 A;  1OFD A;  1QA1 A;  2PYG A;  1O8E A;  1XG2 A;  5C1E A;  1H80 A;  3NB2 A;  3RIQ A;  1HF2 A;  3VSU A;  4MR0 A;  1PLU A;  4MXN A;  4OJ5 A;  3SY2 A;  2VFM A;  5AMV A;  4JRA C;  2QXZ A;  1IA5 A;  4YZ0 A;  4OJ6 A;  2BSP A;  2VBE A;  2VBK A;  3GRH A;  1KCC A;  2EWE A;  2VJI A;  4C2L A;  1EE6 A;  2YUH A;  4YEI A;  4XKW A;  1O8D A;  2O6W A;  4W8R A;  4OJP A;  3KRG A;  1OGO X;  1AIR A;  2NZM A;  3GQ7 A;  3WWG A;  1O8F A;  3BH6 B;  2BM4 A;  4XLE A;  1QCX A;  3EQN A;  2F3L A;  3GQ8 A;  1RMG A;  1O88 A;  1O8J A;  2VFQ A;  2X6W A;  4I84 A;  2NTP A;  4YDT A;  5C1C A;  4Z03 A;  2BX6 A;  2QY1 A;  1TYX A;  2O17 A;  1K5C A;  2VFO A;  1WMR A;  4XR6 A;  2QYU A;  4W8Q A;  1QA3 A;  3JUR A;  1WXR A;  4W8S A;  4YCQ A;  1IB4 A;  2J8I A;  4XOP A;  4W8T A;  2NTQ A;  1HG8 A;  2IOU G;  2UVF A;  3DU1 X;  2O04 A;  1OFM A;  1VBL A;  2X85 A;  4XM3 A;  1IDJ A;  2XTX A;  3N6Z A;  4YZX A;  4Z05 A;  1RWR A;  2NT6 A;  3NAW A;  2VJJ A;  2V5I A;  4XOR A;  3VMW A;  1K8F A;  3ZPP A;  2O1D A;  2INV A;  4XMY A;  3T9G A;  2BM5 A;  3SUC A;  2O0V A;  1JRG A;  1OOC A;  2QZA A;  2VFN A;  3LMW A;  1IDK A;  2XC1 A;  1O8G A;  1QQ1 A;  4V02 C;  3AK5 A;  4URR A;  4YZA A;  1LLW A;  2X3H A;  4OM9 A;  3SYJ A;  2BM6 A;  1O8L A;  3PSZ A;  2PEC A;  3FY3 A;  1PE9 A;  1KTW A;  2VBM A;  1K4Z A;  4HWV A;  1JTA A;  3B4N A;  4XNF A;  3P4G A;  3LYC A;  3VMV A;  2NT9 A;  3ML3 A;  3GQA A;  4OJL A;  3SQV A;  3ZSC A;  2XT4 A;  5JLV C;  1CLW A;  2XTY A;  4EW9 A;  1O8M A;  2NST A;  4YEL A;  2QX3 A;  4NK8 A;  1TYW A;  1NHC A;  2NSP A;  4XLC A;  1GQ8 A;  1LLZ A;  1OGM X;  4XN3 A;  2W7Z A;  1BHE A;  4XLH A;  4XLF A;  1X0C A;  2XTW A;  4KH3 A;  2XT2 A;  1O8K A;  3PET A;  4AVZ A;  3PSS A;  3VSV A;  1QA2 A;  4Z06 A;  1L1I A;  2VFP A;  2X6Y A;  2Z8G A;  5DNS A;  2B0R A;  4OZY A;  2PYH A;  2ODL A;  3SZE A;  1DBG A;  4PMH A;  1QRB A;  4XKV A;  1TSP A;  3N90 A;  4U4B A;  1DAB A;  1EA0 A;  4XQF A;  1BN8 A;  4XLA A;  2IQ7 A;  4U49 A;  1KCD A;  3TH0 A;  4OJO A;  4XL9 A;  1CZF A;  2O0W A;  1O8H A;  1O8I A;  1TYU A;  2J8K A;  2G0Y A;  3B8Y A;  4OPW A;  1EZG A;  4XN0 A;  2X6X A;  4YC5 A;  4OZZ A;  2INU A;  4YEJ A;  3H09 A;  1OFL A;  4NK6 A;  3B90 A; 
#chains in the Genus database with same CATH homology
 3EQO A;  4XON A;  4XOT A;  3UW0 A;  2NTB A;  1QJV A;  3VST A;  1DBO A;  4YZQ A;  3GQ9 A;  1RU4 A;  2UVE A;  1PXZ A;  2PYG A;  1O8E A;  1XG2 A;  5C1E A;  1H80 A;  3VSU A;  4MR0 A;  1PLU A;  4MXN A;  4OJ5 A;  5AMV A;  2QXZ A;  1IA5 A;  4YZ0 A;  4OJ6 A;  2BSP A;  2VBE A;  2VBK A;  3GRH A;  1KCC A;  2EWE A;  2VJI A;  4C2L A;  1EE6 A;  4XKW A;  1O8D A;  4W8R A;  4OJP A;  3KRG A;  1OGO X;  1AIR A;  2NZM A;  3GQ7 A;  3WWG A;  1O8F A;  4XLE A;  1QCX A;  3EQN A;  3GQ8 A;  1RMG A;  1O88 A;  1O8J A;  2X6W A;  4I84 A;  2NTP A;  5C1C A;  4Z03 A;  2QY1 A;  2O17 A;  1K5C A;  1WMR A;  4XR6 A;  4W8Q A;  3JUR A;  4W8S A;  1IB4 A;  4XOP A;  4W8T A;  2NTQ A;  1HG8 A;  2UVF A;  2O04 A;  1OFM A;  1VBL A;  2X85 A;  4XM3 A;  1IDJ A;  4YZX A;  4Z05 A;  1RWR A;  2NT6 A;  2VJJ A;  4XOR A;  3VMW A;  3ZPP A;  2O1D A;  2INV A;  4XMY A;  3T9G A;  3SUC A;  2O0V A;  1JRG A;  1OOC A;  3LMW A;  1IDK A;  1O8G A;  4URR A;  4YZA A;  2X3H A;  1O8L A;  2PEC A;  3FY3 A;  1PE9 A;  1KTW A;  2VBM A;  4XNF A;  4HWV A;  1JTA A;  3B4N A;  3VMV A;  2NT9 A;  3ZSC A;  3GQA A;  4OJL A;  4EW9 A;  1O8M A;  2NST A;  4YEL A;  2QX3 A;  4NK8 A;  1NHC A;  2NSP A;  4XLC A;  1GQ8 A;  1OGM X;  4XN3 A;  1BHE A;  4XLH A;  4XLF A;  1X0C A;  1O8K A;  4AVZ A;  3VSV A;  4Z06 A;  2X6Y A;  2Z8G A;  4OZY A;  2PYH A;  2ODL A;  1DBG A;  4PMH A;  4XKV A;  4U4B A;  4XQF A;  1BN8 A;  4XLA A;  2IQ7 A;  4U49 A;  1KCD A;  4OJO A;  4XL9 A;  1CZF A;  2O0W A;  1O8H A;  1O8I A;  3B8Y A;  4XN0 A;  2X6X A;  4OZZ A;  2INU A;  4YEJ A;  1OFL A;  4NK6 A;  3B90 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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