3GRHA

Crystal structure of escherichia coli ybhc
Total Genus 139
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
139
sequence length
397
structure length
397
Chain Sequence
YFQSMQRPSDQTAPGTSSRPILSAKEAQNFDAQHYFASLTPGAAAWNPSPITLPAQPDFVVGPAGTQGVTHTTIQAAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPADWRHDVNPRGKYMPGKPAWYMYDSCQSKRSDSIGVLCSAVFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDQVQINNVNILGRQNTFFVTNSGVQNRLETNRQPRTLVTNSYIEGDVDIVSGRGAVVFDNTEFRVVNSRTQQEAYVFAPATLSNIYYGFLAVNSRFNAFGDGVAQLGRSLDVDANTNGQVVIRDSAINEGFNTAKPWADAVISNRPFAGNTGSVDDNDEIQRNLNDTNYNRMWEYNNRGVGSK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Acyl-CoA thioester hydrolase ybgC
publication title The crystal structure of the outer membrane lipoprotein YbhC from Escherichia coli sheds new light on the phylogeny of carbohydrate esterase family 8.
pubmed doi rcsb
source organism Escherichia coli k-12
molecule tags Hydrolase
total genus 139
structure length 397
sequence length 397
ec nomenclature
pdb deposition date 2009-03-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01095 Pectinesterase Pectinesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 3grhA00
3B4NA 4Z06A 4NK6A 2X6YA 1O8IA 1O8JA 2NTBA 3VMVA 1DBOA 2PYHA 3KRGA 4URRA 4XQFA 2X6WA 4C2LA 4NK8A 3T9GA 2NT9A 2X3HA 1QCXA 1PXZA 2ODLA 4XNFA 2EWEA 3GRHA 2PECA 3GQ9A 1KTWA 4XKWA 4XLEA 1IA5A 4XOTA 4XLHA 2INUA 4XORA 3ZPPA 2NT6A 1BHEA 4XR6A 2O1DA 4OJPA 4YZAA 4Z03A 3VSVA 1IDKA 1PLUA 4W8RA 3GQ8A 3ZSCA 3VMWA 2PYGA 2VJIA 2Z8GA 4HWVA 4YZQA 2NSTA 2INVA 2UVFA 1QJVA 4U4BA 3VSUA 1HG8A 1OGMX 3WWGA 4EW9A 2O17A 3EQNA 2VBKA 2VBMA 5C1CA 4W8SA 4I84A 4XL9A 1O8EA 2QY1A 2IQ7A 4OZYA 4OZZA 2NTQA 3EQOA 1GQ8A 1VBLA 4U49A 1O8KA 1OGOX 4Z05A 4W8TA 4XONA 1PE9A 1O8HA 1O8MA 1OOCA 3LMWA 3B90A 4XMYA 1KCDA 1O8GA 2VBEA 1O88A 2QX3A 1IDJA 1X0CA 4OJ6A 1O8FA 4YELA 4W8QA 3SUCA 3FY3A 1RU4A 1O8DA 2O0WA 2VJJA 1EE6A 1CZFA 4MR0A 4OJOA 4OJ5A 1O8LA 1OFLA 4XOPA 4YEJA 1WMRA 2X6XA 1IB4A 4XLFA 1AIRA 3VSTA 3GQAA 2QXZA 2NTPA 4XLCA 2X85A 3UW0A 4XM3A 1KCCA 4YZ0A 1BN8A 1RWRA 4XN0A 4MXNA 1RMGA 2BSPA 4AVZA 1DBGA 5AMVA 2NZMA 1JRGA 2O0VA 2UVEA 5C1EA 4YZXA 1K5CA 3GQ7A 4PMHA 2O04A 4XN3A 2NSPA 1OFMA 4OJLA 4XLAA 1XG2A 1NHCA 1JTAA 3JURA 3B8YA 4XKVA 1H80A
chains in the Genus database with same CATH superfamily
3B4NA 4Z06A 4NK6A 2X6YA 2VFMA 1O8IA 1O8JA 2NTBA 4KH3A 3VMVA 5JMCB 1DBOA 2PYHA 3KRGA 4URRA 2BM7A 4XQFA 2X6WA 4YC5A 4C2LA 2V5IA 4NK8A 2BM6A 3T9GA 1OFEA 3SY2A 1TYVA 2XT4A 2NT9A 2X3HA 1QCXA 1PXZA 2ODLA 4XNFA 2EWEA 3GRHA 1QA3A 2PECA 3GQ9A 1KTWA 4XKWA 4XLEA 4JRAC 3LYCA 4XOTA 1IA5A 4XLHA 2INUA 4XORA 3ZPPA 2NT6A 1BHEA 4XR6A 2O1DA 4OJPA 4YZAA 1QA2A 2VFNA 3SQVA 4Z03A 3VSVA 1IDKA 1PLUA 1L1IA 3N90A 4W8RA 3GQ8A 3ZSCA 3VMWA 2PYGA 5JLVC 2BM5A 2VJIA 2Z8GA 3BH7B 4HWVA 4YZQA 2NSTA 2INVA 2B0RA 2IOUG 1QJVA 2UVFA 2XC1A 1LM1A 4U4BA 3VSUA 1K4ZA 1HG8A 1WXRA 1OGMX 1HF2A 3NAWA 3WWGA 4V02C 2BM4A 4EW9A 2O17A 2YUHA 3EQNA 2VBKA 2VBMA 5C1CA 4W8SA 4I84A 4XL9A 1O8EA 1TYXA 3SZEA 1QA1A 2QY1A 2IQ7A 4OZYA 4OZZA 3PETA 2XTWA 2NTQA 3EQOA 4YDTA 1GQ8A 1VBLA 3P4GA 1EZGA 1O8KA 4U49A 2BX6A 1OGOX 4Z05A 3N6ZA 2O6WA 4W8TA 2W7ZA 4XONA 1PE9A 2G0YA 1O8HA 1O8MA 4YCQA 3JX8A 2J8IA 1OOCA 3LMWA 2F3LA 3B90A 4XMYA 1KCDA 1O8GA 2VBEA 1O88A 2QX3A 1IDJA 1X0CA 4OJ6A 1O8FA 4YELA 4OPWA 4W8QA 3SUCA 1TSPA 3NB2A 1TYWA 3DU1X 2XTYA 3LJYA 1QQ1A 3FY3A 1RU4A 1O8DA 2O0WA 2VFQA 2VJJA 1EE6A 3BH6B 2VFPA 1CLWA 1CZFA 4MR0A 4OJOA 1OFDA 3PSSA 4OJ5A 1O8LA 1OFLA 4XOPA 4YEJA 1WMRA 2X6XA 1K8FA 2QYUA 1EA0A 1IB4A 1LLWA 4XLFA 1AIRA 2XT2A 4YFOA 1QRCA 3GQAA 2QXZA 3RIQA 3VSTA 2NTPA 4OM9A 2X85A 4XLCA 4XM3A 3SYJA 3UW0A 1KCCA 4YZ0A 1BN8A 2XTXA 1RWRA 4XN0A 1KQ5A 3AK5A 4MXNA 1RMGA 2BSPA 3H09A 2J8KA 1DABA 1QRBA 1DBGA 5AMVA 3TH0A 4AVZA 2NZMA 1JRGA 2O0VA 2UVEA 3ML3A 4YZXA 5C1EA 1K5CA 3GQ7A 4PMHA 5DNSA 2O04A 4YEIA 1LLZA 3PSZA 1TYUA 4XN3A 2NSPA 1OFMA 2VFOA 4OJLA 4XLAA 1XG2A 1NHCA 1JTAA 2QZAA 3JURA 3B8YA 4XKVA 1H80A
chains in the Genus database with same CATH topology
3B4NA 4Z06A 4NK6A 2X6YA 1O8IA 1O8JA 2NTBA 3VMVA 1DBOA 2PYHA 3KRGA 4URRA 4XQFA 2X6WA 4C2LA 4NK8A 3T9GA 2NT9A 2X3HA 1QCXA 1PXZA 2ODLA 4XNFA 2EWEA 3GRHA 2PECA 3GQ9A 1KTWA 4XKWA 4XLEA 1IA5A 4XOTA 4XLHA 2INUA 4XORA 3ZPPA 2NT6A 1BHEA 4XR6A 2O1DA 4OJPA 4YZAA 4Z03A 3VSVA 1IDKA 1PLUA 4W8RA 3GQ8A 3ZSCA 3VMWA 2PYGA 2VJIA 2Z8GA 4HWVA 4YZQA 2NSTA 2INVA 2UVFA 1QJVA 4U4BA 3VSUA 1HG8A 1OGMX 3WWGA 4EW9A 2O17A 3EQNA 2VBKA 2VBMA 5C1CA 4W8SA 4I84A 4XL9A 1O8EA 2QY1A 2IQ7A 4OZYA 4OZZA 2NTQA 3EQOA 1GQ8A 1VBLA 4U49A 1O8KA 1OGOX 4Z05A 4W8TA 4XONA 1PE9A 1O8HA 1O8MA 1OOCA 3LMWA 3B90A 4XMYA 1KCDA 1O8GA 2VBEA 1O88A 2QX3A 1IDJA 1X0CA 4OJ6A 1O8FA 4YELA 4W8QA 3SUCA 3FY3A 1RU4A 1O8DA 2O0WA 2VJJA 1EE6A 1CZFA 4MR0A 4OJOA 4OJ5A 1O8LA 1OFLA 4XOPA 4YEJA 1WMRA 2X6XA 1IB4A 4XLFA 1AIRA 3VSTA 3GQAA 2QXZA 2NTPA 4XLCA 2X85A 3UW0A 4XM3A 1KCCA 4YZ0A 1BN8A 1RWRA 4XN0A 4MXNA 1RMGA 2BSPA 4AVZA 1DBGA 5AMVA 2NZMA 1JRGA 2O0VA 2UVEA 5C1EA 4YZXA 1K5CA 3GQ7A 4PMHA 2O04A 4XN3A 2NSPA 1OFMA 4OJLA 4XLAA 1XG2A 1NHCA 1JTAA 3JURA 3B8YA 4XKVA 1H80A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3B4N A;  4Z06 A;  4NK6 A;  2X6Y A;  1O8I A;  1O8J A;  2NTB A;  3VMV A;  1DBO A;  2PYH A;  3KRG A;  4URR A;  4XQF A;  2X6W A;  4C2L A;  4NK8 A;  3T9G A;  2NT9 A;  2X3H A;  1QCX A;  1PXZ A;  2ODL A;  4XNF A;  2EWE A;  3GRH A;  2PEC A;  3GQ9 A;  1KTW A;  4XKW A;  4XLE A;  1IA5 A;  4XOT A;  4XLH A;  2INU A;  4XOR A;  3ZPP A;  2NT6 A;  1BHE A;  4XR6 A;  2O1D A;  4OJP A;  4YZA A;  4Z03 A;  3VSV A;  1IDK A;  1PLU A;  4W8R A;  3GQ8 A;  3ZSC A;  3VMW A;  2PYG A;  2VJI A;  2Z8G A;  4HWV A;  4YZQ A;  2NST A;  2INV A;  2UVF A;  1QJV A;  4U4B A;  3VSU A;  1HG8 A;  1OGM X;  3WWG A;  4EW9 A;  2O17 A;  3EQN A;  2VBK A;  2VBM A;  5C1C A;  4W8S A;  4I84 A;  4XL9 A;  1O8E A;  2QY1 A;  2IQ7 A;  4OZY A;  4OZZ A;  2NTQ A;  3EQO A;  1GQ8 A;  1VBL A;  4U49 A;  1O8K A;  1OGO X;  4Z05 A;  4W8T A;  4XON A;  1PE9 A;  1O8H A;  1O8M A;  1OOC A;  3LMW A;  3B90 A;  4XMY A;  1KCD A;  1O8G A;  2VBE A;  1O88 A;  2QX3 A;  1IDJ A;  1X0C A;  4OJ6 A;  1O8F A;  4YEL A;  4W8Q A;  3SUC A;  3FY3 A;  1RU4 A;  1O8D A;  2O0W A;  2VJJ A;  1EE6 A;  1CZF A;  4MR0 A;  4OJO A;  4OJ5 A;  1O8L A;  1OFL A;  4XOP A;  4YEJ A;  1WMR A;  2X6X A;  1IB4 A;  4XLF A;  1AIR A;  3VST A;  3GQA A;  2QXZ A;  2NTP A;  4XLC A;  2X85 A;  3UW0 A;  4XM3 A;  1KCC A;  4YZ0 A;  1BN8 A;  1RWR A;  4XN0 A;  4MXN A;  1RMG A;  2BSP A;  4AVZ A;  1DBG A;  5AMV A;  2NZM A;  1JRG A;  2O0V A;  2UVE A;  5C1E A;  4YZX A;  1K5C A;  3GQ7 A;  4PMH A;  2O04 A;  4XN3 A;  2NSP A;  1OFM A;  4OJL A;  4XLA A;  1XG2 A;  1NHC A;  1JTA A;  3JUR A;  3B8Y A;  4XKV A;  1H80 A; 
#chains in the Genus database with same CATH topology
 3B4N A;  4Z06 A;  4NK6 A;  2X6Y A;  2VFM A;  1O8I A;  1O8J A;  2NTB A;  4KH3 A;  3VMV A;  5JMC B;  1DBO A;  2PYH A;  3KRG A;  4URR A;  2BM7 A;  4XQF A;  2X6W A;  4YC5 A;  4C2L A;  2V5I A;  4NK8 A;  2BM6 A;  3T9G A;  1OFE A;  3SY2 A;  1TYV A;  2XT4 A;  2NT9 A;  2X3H A;  1QCX A;  1PXZ A;  2ODL A;  4XNF A;  2EWE A;  3GRH A;  1QA3 A;  2PEC A;  3GQ9 A;  1KTW A;  4XKW A;  4XLE A;  4JRA C;  3LYC A;  4XOT A;  1IA5 A;  4XLH A;  2INU A;  4XOR A;  3ZPP A;  2NT6 A;  1BHE A;  4XR6 A;  2O1D A;  4OJP A;  4YZA A;  1QA2 A;  2VFN A;  3SQV A;  4Z03 A;  3VSV A;  1IDK A;  1PLU A;  1L1I A;  3N90 A;  4W8R A;  3GQ8 A;  3ZSC A;  3VMW A;  2PYG A;  5JLV C;  2BM5 A;  2VJI A;  2Z8G A;  3BH7 B;  4HWV A;  4YZQ A;  2NST A;  2INV A;  2B0R A;  2IOU G;  1QJV A;  2UVF A;  2XC1 A;  1LM1 A;  4U4B A;  3VSU A;  1K4Z A;  1HG8 A;  1WXR A;  1OGM X;  1HF2 A;  3NAW A;  3WWG A;  4V02 C;  2BM4 A;  4EW9 A;  2O17 A;  2YUH A;  3EQN A;  2VBK A;  2VBM A;  5C1C A;  4W8S A;  4I84 A;  4XL9 A;  1O8E A;  1TYX A;  3SZE A;  1QA1 A;  2QY1 A;  2IQ7 A;  4OZY A;  4OZZ A;  3PET A;  2XTW A;  2NTQ A;  3EQO A;  4YDT A;  1GQ8 A;  1VBL A;  3P4G A;  1EZG A;  1O8K A;  4U49 A;  2BX6 A;  1OGO X;  4Z05 A;  3N6Z A;  2O6W A;  4W8T A;  2W7Z A;  4XON A;  1PE9 A;  2G0Y A;  1O8H A;  1O8M A;  4YCQ A;  3JX8 A;  2J8I A;  1OOC A;  3LMW A;  2F3L A;  3B90 A;  4XMY A;  1KCD A;  1O8G A;  2VBE A;  1O88 A;  2QX3 A;  1IDJ A;  1X0C A;  4OJ6 A;  1O8F A;  4YEL A;  4OPW A;  4W8Q A;  3SUC A;  1TSP A;  3NB2 A;  1TYW A;  3DU1 X;  2XTY A;  3LJY A;  1QQ1 A;  3FY3 A;  1RU4 A;  1O8D A;  2O0W A;  2VFQ A;  2VJJ A;  1EE6 A;  3BH6 B;  2VFP A;  1CLW A;  1CZF A;  4MR0 A;  4OJO A;  1OFD A;  3PSS A;  4OJ5 A;  1O8L A;  1OFL A;  4XOP A;  4YEJ A;  1WMR A;  2X6X A;  1K8F A;  2QYU A;  1EA0 A;  1IB4 A;  1LLW A;  4XLF A;  1AIR A;  2XT2 A;  4YFO A;  1QRC A;  3GQA A;  2QXZ A;  3RIQ A;  3VST A;  2NTP A;  4OM9 A;  2X85 A;  4XLC A;  4XM3 A;  3SYJ A;  3UW0 A;  1KCC A;  4YZ0 A;  1BN8 A;  2XTX A;  1RWR A;  4XN0 A;  1KQ5 A;  3AK5 A;  4MXN A;  1RMG A;  2BSP A;  3H09 A;  2J8K A;  1DAB A;  1QRB A;  1DBG A;  5AMV A;  3TH0 A;  4AVZ A;  2NZM A;  1JRG A;  2O0V A;  2UVE A;  3ML3 A;  4YZX A;  5C1E A;  1K5C A;  3GQ7 A;  4PMH A;  5DNS A;  2O04 A;  4YEI A;  1LLZ A;  3PSZ A;  1TYU A;  4XN3 A;  2NSP A;  1OFM A;  2VFO A;  4OJL A;  4XLA A;  1XG2 A;  1NHC A;  1JTA A;  2QZA A;  3JUR A;  3B8Y A;  4XKV A;  1H80 A; 
#chains in the Genus database with same CATH homology
 3B4N A;  4Z06 A;  4NK6 A;  2X6Y A;  1O8I A;  1O8J A;  2NTB A;  3VMV A;  1DBO A;  2PYH A;  3KRG A;  4URR A;  4XQF A;  2X6W A;  4C2L A;  4NK8 A;  3T9G A;  2NT9 A;  2X3H A;  1QCX A;  1PXZ A;  2ODL A;  4XNF A;  2EWE A;  3GRH A;  2PEC A;  3GQ9 A;  1KTW A;  4XKW A;  4XLE A;  1IA5 A;  4XOT A;  4XLH A;  2INU A;  4XOR A;  3ZPP A;  2NT6 A;  1BHE A;  4XR6 A;  2O1D A;  4OJP A;  4YZA A;  4Z03 A;  3VSV A;  1IDK A;  1PLU A;  4W8R A;  3GQ8 A;  3ZSC A;  3VMW A;  2PYG A;  2VJI A;  2Z8G A;  4HWV A;  4YZQ A;  2NST A;  2INV A;  2UVF A;  1QJV A;  4U4B A;  3VSU A;  1HG8 A;  1OGM X;  3WWG A;  4EW9 A;  2O17 A;  3EQN A;  2VBK A;  2VBM A;  5C1C A;  4W8S A;  4I84 A;  4XL9 A;  1O8E A;  2QY1 A;  2IQ7 A;  4OZY A;  4OZZ A;  2NTQ A;  3EQO A;  1GQ8 A;  1VBL A;  4U49 A;  1O8K A;  1OGO X;  4Z05 A;  4W8T A;  4XON A;  1PE9 A;  1O8H A;  1O8M A;  1OOC A;  3LMW A;  3B90 A;  4XMY A;  1KCD A;  1O8G A;  2VBE A;  1O88 A;  2QX3 A;  1IDJ A;  1X0C A;  4OJ6 A;  1O8F A;  4YEL A;  4W8Q A;  3SUC A;  3FY3 A;  1RU4 A;  1O8D A;  2O0W A;  2VJJ A;  1EE6 A;  1CZF A;  4MR0 A;  4OJO A;  4OJ5 A;  1O8L A;  1OFL A;  4XOP A;  4YEJ A;  1WMR A;  2X6X A;  1IB4 A;  4XLF A;  1AIR A;  3VST A;  3GQA A;  2QXZ A;  2NTP A;  4XLC A;  2X85 A;  3UW0 A;  4XM3 A;  1KCC A;  4YZ0 A;  1BN8 A;  1RWR A;  4XN0 A;  4MXN A;  1RMG A;  2BSP A;  4AVZ A;  1DBG A;  5AMV A;  2NZM A;  1JRG A;  2O0V A;  2UVE A;  5C1E A;  4YZX A;  1K5C A;  3GQ7 A;  4PMH A;  2O04 A;  4XN3 A;  2NSP A;  1OFM A;  4OJL A;  4XLA A;  1XG2 A;  1NHC A;  1JTA A;  3JUR A;  3B8Y A;  4XKV A;  1H80 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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