3GSHA

Three-dimensional structure of a post translational modified barley ltp1
Total Genus 30
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
91
structure length
91
Chain Sequence
LNCGQVDSKMKPCLTYVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPYTISPDIDCSRIY
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Lipid binding protein
molecule keywords Non-specific lipid-transfer protein 1
publication title The crystal structure of oxylipin-conjugated barley LTP1 highlights the unique plasticity of the hydrophobic cavity of these plant lipid-binding proteins.
pubmed doi rcsb
total genus 30
structure length 91
sequence length 91
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-03-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00234 Tryp_alpha_amyl Protease inhibitor/seed storage/LTP family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.110.10 Mainly Alpha Orthogonal Bundle Hydrophobic Seed Protein Plant lipid-transfer and hydrophobic proteins 3gshA00
1GH1A 1BIPA 1SM7A 1BWOA 1N89A 1LIPA 1JTBA 4CVWC 2LVFA 1FK4A 1PSYA 1MZLA 1BEAA 5DOMA 2RKNA 1FK7A 1BFAA 1HYPA 1L6HA 1S6DA 1W2QA 2N81A 2DS2B 1HSSA 2ALGA 2N2ZA 4XUWA 1PNBB 1CZ2A 1FK6A 1SIYA 1T12A 1UVBA 1UVAA 1FK0A 1TUKA 1TMQB 1FK3A 1FK2A 1MZMA 1UVCA 1BE2A 1AFHA 1RZLA 1FK1A 1MIDA 1FK5A 2B5SA 1B1UA 3GSHA 2MALA 1BV2A
chains in the Genus database with same CATH superfamily
1GH1A 1BIPA 1SM7A 1BWOA 1N89A 1LIPA 1JTBA 4CVWC 2LVFA 1FK4A 1PSYA 1MZLA 1BEAA 5DOMA 2RKNA 1FK7A 1BFAA 1HYPA 1L6HA 2UV8G 3HMJG 1S6DA 1W2QA 2N81A 2DS2B 1HSSA 2ALGA 2N2ZA 4XUWA 1PNBB 1CZ2A 1FK6A 1SIYA 1T12A 1UVBA 1UVAA 1FK0A 1TUKA 1TMQB 1FK3A 1FK2A 1MZMA 1MIYA 1UVCA 1BE2A 2VKZG 1AFHA 1RZLA 1MIWA 3H37A 3H3AA 1FK1A 1MIDA 1FK5A 2B5SA 1B1UA 3GSHA 2MALA 1MIVA 1BV2A
chains in the Genus database with same CATH topology
1GH1A 1BIPA 1SM7A 1BWOA 1N89A 1LIPA 1JTBA 4CVWC 2LVFA 1FK4A 1PSYA 1MZLA 1BEAA 5DOMA 2RKNA 1FK7A 1BFAA 1HYPA 1L6HA 1S6DA 1W2QA 2N81A 2DS2B 1HSSA 2ALGA 2N2ZA 4XUWA 1PNBB 1CZ2A 1FK6A 1SIYA 1T12A 1UVBA 1UVAA 1FK0A 1TUKA 1TMQB 1FK3A 1FK2A 1MZMA 1UVCA 1BE2A 1AFHA 1RZLA 1FK1A 1MIDA 1FK5A 2B5SA 1B1UA 3GSHA 2MALA 1BV2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GH1 A;  1BIP A;  1SM7 A;  1BWO A;  1N89 A;  1LIP A;  1JTB A;  4CVW C;  2LVF A;  1FK4 A;  1PSY A;  1MZL A;  1BEA A;  5DOM A;  2RKN A;  1FK7 A;  1BFA A;  1HYP A;  1L6H A;  1S6D A;  1W2Q A;  2N81 A;  2DS2 B;  1HSS A;  2ALG A;  2N2Z A;  4XUW A;  1PNB B;  1CZ2 A;  1FK6 A;  1SIY A;  1T12 A;  1UVB A;  1UVA A;  1FK0 A;  1TUK A;  1TMQ B;  1FK3 A;  1FK2 A;  1MZM A;  1UVC A;  1BE2 A;  1AFH A;  1RZL A;  1FK1 A;  1MID A;  1FK5 A;  2B5S A;  1B1U A;  3GSH A;  2MAL A;  1BV2 A; 
#chains in the Genus database with same CATH topology
 1GH1 A;  1BIP A;  1SM7 A;  1BWO A;  1N89 A;  1LIP A;  1JTB A;  4CVW C;  2LVF A;  1FK4 A;  1PSY A;  1MZL A;  1BEA A;  5DOM A;  2RKN A;  1FK7 A;  1BFA A;  1HYP A;  1L6H A;  2UV8 G;  3HMJ G;  1S6D A;  1W2Q A;  2N81 A;  2DS2 B;  1HSS A;  2ALG A;  2N2Z A;  4XUW A;  1PNB B;  1CZ2 A;  1FK6 A;  1SIY A;  1T12 A;  1UVB A;  1UVA A;  1FK0 A;  1TUK A;  1TMQ B;  1FK3 A;  1FK2 A;  1MZM A;  1MIY A;  1UVC A;  1BE2 A;  2VKZ G;  1AFH A;  1RZL A;  1MIW A;  3H37 A;  3H3A A;  1FK1 A;  1MID A;  1FK5 A;  2B5S A;  1B1U A;  3GSH A;  2MAL A;  1MIV A;  1BV2 A; 
#chains in the Genus database with same CATH homology
 1GH1 A;  1BIP A;  1SM7 A;  1BWO A;  1N89 A;  1LIP A;  1JTB A;  4CVW C;  2LVF A;  1FK4 A;  1PSY A;  1MZL A;  1BEA A;  5DOM A;  2RKN A;  1FK7 A;  1BFA A;  1HYP A;  1L6H A;  1S6D A;  1W2Q A;  2N81 A;  2DS2 B;  1HSS A;  2ALG A;  2N2Z A;  4XUW A;  1PNB B;  1CZ2 A;  1FK6 A;  1SIY A;  1T12 A;  1UVB A;  1UVA A;  1FK0 A;  1TUK A;  1TMQ B;  1FK3 A;  1FK2 A;  1MZM A;  1UVC A;  1BE2 A;  1AFH A;  1RZL A;  1FK1 A;  1MID A;  1FK5 A;  2B5S A;  1B1U A;  3GSH A;  2MAL A;  1BV2 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...