3GVEA

Crystal structure of calcineurin-like phosphoesterase yfkn from bacillus subtilis
Total Genus 103
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
103
sequence length
334
structure length
334
Chain Sequence
PQVHLSILATTDIHANMMDYDYYSDKETADFGLARTAQLIQKHREQNPNTLLVDNGDLIQGNPLGEYAVKYQKDDIISGTKTHPIISVMNALKYDAGTLGNHEFNYGLDFLDGTIKGADFPIVNANVKTTSGENRYTPYVINEKTLIDENGNEQKVKVGYIGFVPPQIMTWDKKNLEGQVQVQDIVESANETIPKMKAEGADVIIALAHTGIEKQAQSSGAENAVFDLATKTKGIDAIISGHQHGLFPSAEYAGVAQFNVEKGTINGIPVVMPSSWGKYLGVIDLKLEKADGSWKVADSKGSIESIAGNVTSRNETVTNTIQQTHQNTLEYVRK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Crystal Structure of Calcineurin-like Phosphoesterase from Bacillus subtilis
rcsb
source organism Bacillus subtilis subsp. subtilis
molecule tags Structural genomics, unknown function
molecule keywords YfkN protein
total genus 103
structure length 334
sequence length 334
chains with identical sequence B
ec nomenclature ec 3.1.3.5: 5'-nucleotidase.
pdb deposition date 2009-03-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 3gveA00
1W24A 5JPFA 3H63A 4XPNA 5EQVA 2O8GA 2NPPC 2YVTA 1QHWA 3RL4A 4FBQA 3QG5C 3GVEA 4UT3B 2HYPA 4I5NC 1HO5A 4MP0A 1WARA 4DSYA 5J28A 3P71C 4M0VA 2BDXA 1S3NA 4JA9A 4TUGA 3KBPA 2USHA 2KKNA 2WDEA 1S95A 4IL1A 4LACC 5HPEA 2DFJA 4F0ZA 4ZX2A 3JYFA 2Z06A 4ORAA 3LL8A 1XM7A 3N5UA 2NYLC 1QFCA 2QFRA 2A22A 2Q8UA 4O5GA 2NXFA 1Z2WA 1II7A 3RL5A 1AUIA 4YKEA 1KBPA 4O24A 4I5LC 2IE3C 1IT6A 3H60A 5JPEA 1HP1A 3DSDA 3QFOA 4H1SA 2P6BA 1UTEA 4FBWA 2GJUA 4ORCA 3DSCA 2IAEC 5INBA 5DNYA 2AHDA 4FCXA 3QFMA 3IB8A 2ZBMA 4ORBA 3IVEA 4OR9A 4WWLA 4UT2A 4B2OA 1S8EA 4J6OA 3AV0A 3HVQA 4H2IA 4KKZA 2Z1AA 2BQ8X 3FGAC 3H66A 3T1IA 1S70A 2WDCA 2WDDA 4FBKA 3THNA 4MOYA 5GTUA 1WAO1 1OIDA 3E7AA 1Z2XA 2HYOA 3K7VC 4UWQA 3ZTVA 3H69A 3CK2A 4G9JA 4DT2A 4IYPC 3C5WC 1HPUA 2XMOA 2IE4C 1OIEA 3RL3A 3RQZA 2NYMC 3IVDA 1T71A 2CV9A 3K7WC 3TGHA 4DHLA 5JJTA 1UF3A 3H68A 3QFKA 1OI8A 4TUIA 4O4KA 1M63A 3PSNA 4HD0A 3H67A 2Z72A 3EGGA 4H1YP 5F3WA 3ZU0A 2O8AA 1S3LA 3IB7A 1V73A 2QFPA 1NNWA 4H2FA 3THOB 3V4YA 2WDFA 1JK7A 3EGHA 2JOGA 3H61A 4V0VA 1FJMA 3C9FA 4NZVA 4H2BA 1XZWA 1TCOA 3H64A 4V0XA 5C1VA 3E7BA 2R17A 3PSOA 4KBPA 4MOVA 1T70A 3DW8C 1MF8A 1SU1A 2BCDA 3AUZA 4LU9A 4H2GA 4V0WA 4ZVZA 1S3MA 2HY1A 1U32A 3H62B 4O43A 2QJCA 4LTYA 4UT3A 1USHA 3QFNA 4JA7A 4Q7FA 3ICFA 5IOHA 1G5BA 5B8IA
chains in the Genus database with same CATH superfamily
1W24A 5JPFA 3H63A 4XPNA 5EQVA 2O8GA 2NPPC 2YVTA 1QHWA 3RL4A 4FBQA 3QG5C 3GVEA 4UT3B 2HYPA 4I5NC 1HO5A 4MP0A 1WARA 4DSYA 5J28A 3P71C 4M0VA 2BDXA 1S3NA 4JA9A 4TUGA 3KBPA 2USHA 2KKNA 2WDEA 1S95A 4IL1A 4LACC 5HPEA 2DFJA 4F0ZA 4ZX2A 3JYFA 2Z06A 4ORAA 3LL8A 1XM7A 3N5UA 2NYLC 1QFCA 2QFRA 2A22A 2Q8UA 4O5GA 2DXNA 2NXFA 1Z2WA 1II7A 3RL5A 1AUIA 4YKEA 1KBPA 4O24A 4I5LC 2IE3C 1IT6A 3H60A 5JPEA 1HP1A 3DSDA 3QFOA 4H1SA 2P6BA 1UTEA 4FBWA 2GJUA 4ORCA 3DSCA 2IAEC 5INBA 5DNYA 2AHDA 4FCXA 3QFMA 3IB8A 2ZBMA 4ORBA 3IVEA 4OR9A 4WWLA 4UT2A 4B2OA 1S8EA 4J6OA 3AV0A 3HVQA 4H2IA 4KKZA 2Z1AA 2BQ8X 3FGAC 3H66A 3T1IA 1S70A 2WDCA 2WDDA 4FBKA 3THNA 4MOYA 5GTUA 2ZO9B 1WAO1 1OIDA 3E7AA 1Z2XA 2HYOA 3K7VC 4UWQA 3ZTVA 3H69A 3CK2A 4G9JA 4DT2A 4IYPC 3C5WC 1HPUA 2ZOAA 2XMOA 2IE4C 1OIEA 3RL3A 3RQZA 2NYMC 3IVDA 1T71A 2CV9A 3K7WC 3TGHA 4DHLA 5JJTA 1UF3A 3H68A 3QFKA 1OI8A 4TUIA 4O4KA 1M63A 3PSNA 4HD0A 3E0JA 3H67A 2Z72A 3EGGA 4H1YP 5F3WA 3ZU0A 2O8AA 1S3LA 3IB7A 1V73A 2QFPA 1NNWA 4H2FA 3THOB 3V4YA 2WDFA 1JK7A 3EGHA 2JOGA 3H61A 3D03A 4V0VA 1FJMA 3C9FA 4NZVA 4H2BA 1XZWA 1TCOA 3H64A 4V0XA 5C1VA 3E7BA 2R17A 3PSOA 4KBPA 4MOVA 1T70A 3DW8C 1MF8A 1SU1A 2BCDA 3AUZA 4LU9A 4H2GA 4V0WA 4ZVZA 1S3MA 2HY1A 1U32A 3H62B 2YEQA 4O43A 2QJCA 4LTYA 4UT3A 1USHA 3QFNA 4JA7A 4Q7FA 2DXLA 3FLOA 3ICFA 5IOHA 1G5BA 5B8IA
chains in the Genus database with same CATH topology
1W24A 5JPFA 3H63A 4XPNA 5EQVA 2O8GA 2NPPC 2YVTA 1QHWA 3RL4A 4FBQA 3QG5C 3GVEA 4UT3B 2HYPA 4I5NC 1HO5A 4MP0A 1WARA 4DSYA 5J28A 3P71C 4M0VA 2BDXA 1S3NA 4JA9A 4TUGA 3KBPA 2USHA 2KKNA 2WDEA 1S95A 4IL1A 4LACC 5HPEA 2DFJA 4F0ZA 4ZX2A 3JYFA 2Z06A 4ORAA 3LL8A 1XM7A 3N5UA 2NYLC 1QFCA 2QFRA 2A22A 2Q8UA 4O5GA 2DXNA 2NXFA 1Z2WA 1II7A 3RL5A 1AUIA 4YKEA 1KBPA 4O24A 4I5LC 2IE3C 1IT6A 3H60A 5JPEA 1HP1A 3DSDA 3QFOA 4H1SA 2P6BA 1UTEA 4FBWA 2GJUA 4ORCA 3DSCA 2IAEC 5INBA 5DNYA 2AHDA 4FCXA 3QFMA 3IB8A 2ZBMA 4ORBA 3IVEA 4OR9A 4WWLA 4UT2A 4B2OA 1S8EA 4J6OA 3AV0A 3HVQA 4H2IA 4KKZA 2Z1AA 2BQ8X 3FGAC 3H66A 3T1IA 1S70A 2WDCA 2WDDA 4FBKA 3THNA 4MOYA 5GTUA 2ZO9B 1WAO1 1OIDA 3E7AA 1Z2XA 2HYOA 3K7VC 4UWQA 3ZTVA 3H69A 3CK2A 4G9JA 4DT2A 4IYPC 3C5WC 1HPUA 2ZOAA 2XMOA 2IE4C 1OIEA 3RL3A 3RQZA 2NYMC 3IVDA 1T71A 2CV9A 3K7WC 3TGHA 4DHLA 5JJTA 1UF3A 3H68A 3QFKA 1OI8A 4TUIA 4O4KA 1M63A 3PSNA 4HD0A 3E0JA 3H67A 2Z72A 3EGGA 4H1YP 5F3WA 3ZU0A 2O8AA 1S3LA 3IB7A 1V73A 2QFPA 1NNWA 4H2FA 3THOB 3V4YA 2WDFA 1JK7A 3EGHA 2JOGA 3H61A 3D03A 4V0VA 1FJMA 3C9FA 4NZVA 4H2BA 1XZWA 1TCOA 3H64A 4V0XA 5C1VA 3E7BA 2R17A 3PSOA 4KBPA 4MOVA 1T70A 3DW8C 1MF8A 1SU1A 2BCDA 3AUZA 4LU9A 4H2GA 4V0WA 4ZVZA 1S3MA 2HY1A 1U32A 3H62B 2YEQA 4O43A 2QJCA 4LTYA 4UT3A 1USHA 3QFNA 4JA7A 4Q7FA 2DXLA 3FLOA 3ICFA 5IOHA 1G5BA 5B8IA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1W24 A;  5JPF A;  3H63 A;  4XPN A;  5EQV A;  2O8G A;  2NPP C;  2YVT A;  1QHW A;  3RL4 A;  4FBQ A;  3QG5 C;  3GVE A;  4UT3 B;  2HYP A;  4I5N C;  1HO5 A;  4MP0 A;  1WAR A;  4DSY A;  5J28 A;  3P71 C;  4M0V A;  2BDX A;  1S3N A;  4JA9 A;  4TUG A;  3KBP A;  2USH A;  2KKN A;  2WDE A;  1S95 A;  4IL1 A;  4LAC C;  5HPE A;  2DFJ A;  4F0Z A;  4ZX2 A;  3JYF A;  2Z06 A;  4ORA A;  3LL8 A;  1XM7 A;  3N5U A;  2NYL C;  1QFC A;  2QFR A;  2A22 A;  2Q8U A;  4O5G A;  2NXF A;  1Z2W A;  1II7 A;  3RL5 A;  1AUI A;  4YKE A;  1KBP A;  4O24 A;  4I5L C;  2IE3 C;  1IT6 A;  3H60 A;  5JPE A;  1HP1 A;  3DSD A;  3QFO A;  4H1S A;  2P6B A;  1UTE A;  4FBW A;  2GJU A;  4ORC A;  3DSC A;  2IAE C;  5INB A;  5DNY A;  2AHD A;  4FCX A;  3QFM A;  3IB8 A;  2ZBM A;  4ORB A;  3IVE A;  4OR9 A;  4WWL A;  4UT2 A;  4B2O A;  1S8E A;  4J6O A;  3AV0 A;  3HVQ A;  4H2I A;  4KKZ A;  2Z1A A;  2BQ8 X;  3FGA C;  3H66 A;  3T1I A;  1S70 A;  2WDC A;  2WDD A;  4FBK A;  3THN A;  4MOY A;  5GTU A;  1WAO 1;  1OID A;  3E7A A;  1Z2X A;  2HYO A;  3K7V C;  4UWQ A;  3ZTV A;  3H69 A;  3CK2 A;  4G9J A;  4DT2 A;  4IYP C;  3C5W C;  1HPU A;  2XMO A;  2IE4 C;  1OIE A;  3RL3 A;  3RQZ A;  2NYM C;  3IVD A;  1T71 A;  2CV9 A;  3K7W C;  3TGH A;  4DHL A;  5JJT A;  1UF3 A;  3H68 A;  3QFK A;  1OI8 A;  4TUI A;  4O4K A;  1M63 A;  3PSN A;  4HD0 A;  3H67 A;  2Z72 A;  3EGG A;  4H1Y P;  5F3W A;  3ZU0 A;  2O8A A;  1S3L A;  3IB7 A;  1V73 A;  2QFP A;  1NNW A;  4H2F A;  3THO B;  3V4Y A;  2WDF A;  1JK7 A;  3EGH A;  2JOG A;  3H61 A;  4V0V A;  1FJM A;  3C9F A;  4NZV A;  4H2B A;  1XZW A;  1TCO A;  3H64 A;  4V0X A;  5C1V A;  3E7B A;  2R17 A;  3PSO A;  4KBP A;  4MOV A;  1T70 A;  3DW8 C;  1MF8 A;  1SU1 A;  2BCD A;  3AUZ A;  4LU9 A;  4H2G A;  4V0W A;  4ZVZ A;  1S3M A;  2HY1 A;  1U32 A;  3H62 B;  4O43 A;  2QJC A;  4LTY A;  4UT3 A;  1USH A;  3QFN A;  4JA7 A;  4Q7F A;  3ICF A;  5IOH A;  1G5B A;  5B8I A; 
#chains in the Genus database with same CATH topology
 1W24 A;  5JPF A;  3H63 A;  4XPN A;  5EQV A;  2O8G A;  2NPP C;  2YVT A;  1QHW A;  3RL4 A;  4FBQ A;  3QG5 C;  3GVE A;  4UT3 B;  2HYP A;  4I5N C;  1HO5 A;  4MP0 A;  1WAR A;  4DSY A;  5J28 A;  3P71 C;  4M0V A;  2BDX A;  1S3N A;  4JA9 A;  4TUG A;  3KBP A;  2USH A;  2KKN A;  2WDE A;  1S95 A;  4IL1 A;  4LAC C;  5HPE A;  2DFJ A;  4F0Z A;  4ZX2 A;  3JYF A;  2Z06 A;  4ORA A;  3LL8 A;  1XM7 A;  3N5U A;  2NYL C;  1QFC A;  2QFR A;  2A22 A;  2Q8U A;  4O5G A;  2DXN A;  2NXF A;  1Z2W A;  1II7 A;  3RL5 A;  1AUI A;  4YKE A;  1KBP A;  4O24 A;  4I5L C;  2IE3 C;  1IT6 A;  3H60 A;  5JPE A;  1HP1 A;  3DSD A;  3QFO A;  4H1S A;  2P6B A;  1UTE A;  4FBW A;  2GJU A;  4ORC A;  3DSC A;  2IAE C;  5INB A;  5DNY A;  2AHD A;  4FCX A;  3QFM A;  3IB8 A;  2ZBM A;  4ORB A;  3IVE A;  4OR9 A;  4WWL A;  4UT2 A;  4B2O A;  1S8E A;  4J6O A;  3AV0 A;  3HVQ A;  4H2I A;  4KKZ A;  2Z1A A;  2BQ8 X;  3FGA C;  3H66 A;  3T1I A;  1S70 A;  2WDC A;  2WDD A;  4FBK A;  3THN A;  4MOY A;  5GTU A;  2ZO9 B;  1WAO 1;  1OID A;  3E7A A;  1Z2X A;  2HYO A;  3K7V C;  4UWQ A;  3ZTV A;  3H69 A;  3CK2 A;  4G9J A;  4DT2 A;  4IYP C;  3C5W C;  1HPU A;  2ZOA A;  2XMO A;  2IE4 C;  1OIE A;  3RL3 A;  3RQZ A;  2NYM C;  3IVD A;  1T71 A;  2CV9 A;  3K7W C;  3TGH A;  4DHL A;  5JJT A;  1UF3 A;  3H68 A;  3QFK A;  1OI8 A;  4TUI A;  4O4K A;  1M63 A;  3PSN A;  4HD0 A;  3E0J A;  3H67 A;  2Z72 A;  3EGG A;  4H1Y P;  5F3W A;  3ZU0 A;  2O8A A;  1S3L A;  3IB7 A;  1V73 A;  2QFP A;  1NNW A;  4H2F A;  3THO B;  3V4Y A;  2WDF A;  1JK7 A;  3EGH A;  2JOG A;  3H61 A;  3D03 A;  4V0V A;  1FJM A;  3C9F A;  4NZV A;  4H2B A;  1XZW A;  1TCO A;  3H64 A;  4V0X A;  5C1V A;  3E7B A;  2R17 A;  3PSO A;  4KBP A;  4MOV A;  1T70 A;  3DW8 C;  1MF8 A;  1SU1 A;  2BCD A;  3AUZ A;  4LU9 A;  4H2G A;  4V0W A;  4ZVZ A;  1S3M A;  2HY1 A;  1U32 A;  3H62 B;  2YEQ A;  4O43 A;  2QJC A;  4LTY A;  4UT3 A;  1USH A;  3QFN A;  4JA7 A;  4Q7F A;  2DXL A;  3FLO A;  3ICF A;  5IOH A;  1G5B A;  5B8I A; 
#chains in the Genus database with same CATH homology
 1W24 A;  5JPF A;  3H63 A;  4XPN A;  5EQV A;  2O8G A;  2NPP C;  2YVT A;  1QHW A;  3RL4 A;  4FBQ A;  3QG5 C;  3GVE A;  4UT3 B;  2HYP A;  4I5N C;  1HO5 A;  4MP0 A;  1WAR A;  4DSY A;  5J28 A;  3P71 C;  4M0V A;  2BDX A;  1S3N A;  4JA9 A;  4TUG A;  3KBP A;  2USH A;  2KKN A;  2WDE A;  1S95 A;  4IL1 A;  4LAC C;  5HPE A;  2DFJ A;  4F0Z A;  4ZX2 A;  3JYF A;  2Z06 A;  4ORA A;  3LL8 A;  1XM7 A;  3N5U A;  2NYL C;  1QFC A;  2QFR A;  2A22 A;  2Q8U A;  4O5G A;  2DXN A;  2NXF A;  1Z2W A;  1II7 A;  3RL5 A;  1AUI A;  4YKE A;  1KBP A;  4O24 A;  4I5L C;  2IE3 C;  1IT6 A;  3H60 A;  5JPE A;  1HP1 A;  3DSD A;  3QFO A;  4H1S A;  2P6B A;  1UTE A;  4FBW A;  2GJU A;  4ORC A;  3DSC A;  2IAE C;  5INB A;  5DNY A;  2AHD A;  4FCX A;  3QFM A;  3IB8 A;  2ZBM A;  4ORB A;  3IVE A;  4OR9 A;  4WWL A;  4UT2 A;  4B2O A;  1S8E A;  4J6O A;  3AV0 A;  3HVQ A;  4H2I A;  4KKZ A;  2Z1A A;  2BQ8 X;  3FGA C;  3H66 A;  3T1I A;  1S70 A;  2WDC A;  2WDD A;  4FBK A;  3THN A;  4MOY A;  5GTU A;  2ZO9 B;  1WAO 1;  1OID A;  3E7A A;  1Z2X A;  2HYO A;  3K7V C;  4UWQ A;  3ZTV A;  3H69 A;  3CK2 A;  4G9J A;  4DT2 A;  4IYP C;  3C5W C;  1HPU A;  2ZOA A;  2XMO A;  2IE4 C;  1OIE A;  3RL3 A;  3RQZ A;  2NYM C;  3IVD A;  1T71 A;  2CV9 A;  3K7W C;  3TGH A;  4DHL A;  5JJT A;  1UF3 A;  3H68 A;  3QFK A;  1OI8 A;  4TUI A;  4O4K A;  1M63 A;  3PSN A;  4HD0 A;  3E0J A;  3H67 A;  2Z72 A;  3EGG A;  4H1Y P;  5F3W A;  3ZU0 A;  2O8A A;  1S3L A;  3IB7 A;  1V73 A;  2QFP A;  1NNW A;  4H2F A;  3THO B;  3V4Y A;  2WDF A;  1JK7 A;  3EGH A;  2JOG A;  3H61 A;  3D03 A;  4V0V A;  1FJM A;  3C9F A;  4NZV A;  4H2B A;  1XZW A;  1TCO A;  3H64 A;  4V0X A;  5C1V A;  3E7B A;  2R17 A;  3PSO A;  4KBP A;  4MOV A;  1T70 A;  3DW8 C;  1MF8 A;  1SU1 A;  2BCD A;  3AUZ A;  4LU9 A;  4H2G A;  4V0W A;  4ZVZ A;  1S3M A;  2HY1 A;  1U32 A;  3H62 B;  2YEQ A;  4O43 A;  2QJC A;  4LTY A;  4UT3 A;  1USH A;  3QFN A;  4JA7 A;  4Q7F A;  2DXL A;  3FLO A;  3ICF A;  5IOH A;  1G5B A;  5B8I A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...