3GVEA

Crystal structure of calcineurin-like phosphoesterase yfkn from bacillus subtilis
Total Genus 103
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
103
sequence length
334
structure length
334
Chain Sequence
PQVHLSILATTDIHANMMDYDYYSDKETADFGLARTAQLIQKHREQNPNTLLVDNGDLIQGNPLGEYAVKYQKDDIISGTKTHPIISVMNALKYDAGTLGNHEFNYGLDFLDGTIKGADFPIVNANVKTTSGENRYTPYVINEKTLIDENGNEQKVKVGYIGFVPPQIMTWDKKNLEGQVQVQDIVESANETIPKMKAEGADVIIALAHTGIEKQAQSSGAENAVFDLATKTKGIDAIISGHQHGLFPSAEYAGVAQFNVEKGTINGIPVVMPSSWGKYLGVIDLKLEKADGSWKVADSKGSIESIAGNVTSRNETVTNTIQQTHQNTLEYVRK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords YfkN protein
publication title Crystal Structure of Calcineurin-like Phosphoesterase from Bacillus subtilis
rcsb
source organism Bacillus subtilis subsp. subtilis
molecule tags Structural genomics, unknown function
total genus 103
structure length 334
sequence length 334
chains with identical sequence B
ec nomenclature ec 3.1.3.5: 5'-nucleotidase.
pdb deposition date 2009-03-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 3gveA00
2HYOA 1G5BA 4I5NC 3K7WC 2BQ8X 4IL1A 4FBWA 2USHA 1S95A 4MP0A 5JPFA 2DFJA 3FGAC 4F0ZA 1HO5A 4FBKA 4J6OA 2IAEC 1JK7A 3QFMA 4LTYA 2Z06A 2CV9A 4M0VA 4O24A 1NNWA 4H1SA 4ZVZA 1OIEA 5J28A 2WDEA 3DSDA 4KKZA 3P71C 1XZWA 3H66A 4UT3B 3PSOA 3HVQA 4XPNA 1S3NA 1U32A 2QJCA 3ZTVA 2WDFA 4V0WA 3PSNA 4V0XA 5IOHA 1QFCA 1QHWA 3ZU0A 5HPEA 4ORCA 4UT2A 2O8GA 4UT3A 2XMOA 1OIDA 1USHA 1MF8A 3RL3A 2QFPA 4TUIA 3N5UA 2NYMC 2Z72A 3KBPA 2Z1AA 4H2IA 4DHLA 2NXFA 4O4KA 3AV0A 5GTUA 3LL8A 2QFRA 4FBQA 4H1YP 3T1IA 1M63A 1KBPA 4MOVA 1W24A 4O43A 5B8IA 4NZVA 4DSYA 4JA9A 2WDCA 1UTEA 3H67A 3IB7A 2Q8UA 3DSCA 1S8EA 1HP1A 4JA7A 3RL4A 2YVTA 2WDDA 2R17A 1S3MA 2GJUA 1HPUA 4G9JA 3QFKA 2P6BA 4H2FA 2O8AA 3IVEA 4LU9A 4Q7FA 4WWLA 3EGHA 3GVEA 1S3LA 3H60A 2BDXA 3QG5C 1FJMA 2JOGA 3C9FA 4I5LC 2BCDA 2IE4C 3E7AA 3QFOA 4H2GA 2HY1A 4KBPA 3C5WC 4UWQA 3H64A 3EGGA 5JPEA 4MOYA 1T71A 1T70A 3THNA 4O5GA 4ORBA 3H61A 4V0VA 1Z2XA 3TGHA 3RL5A 1UF3A 1Z2WA 2NYLC 4YKEA 4ZX2A 5JJTA 1WARA 1SU1A 1S70A 3DW8C 1AUIA 2HYPA 1XM7A 4B2OA 2AHDA 1WAO1 2IE3C 4IYPC 3CK2A 4HD0A 5EQVA 1II7A 2NPPC 3V4YA 4DT2A 3AUZA 2KKNA 3H68A 3H62B 4ORAA 3IB8A 4OR9A 3THOB 3QFNA 4H2BA 2ZBMA 3JYFA 3E7BA 3RQZA 1V73A 1TCOA 5F3WA 3IVDA 2A22A 5C1VA 1OI8A 3H63A 4TUGA 5INBA 3K7VC 3ICFA 3H69A 4FCXA 5DNYA 1IT6A 4LACC
chains in the Genus database with same CATH superfamily
2HYOA 1G5BA 4I5NC 3K7WC 2BQ8X 4IL1A 4FBWA 2USHA 1S95A 4MP0A 5JPFA 2DFJA 3FGAC 4F0ZA 1HO5A 4FBKA 4J6OA 2IAEC 1JK7A 3QFMA 4LTYA 2Z06A 2CV9A 4M0VA 4O24A 1NNWA 4H1SA 4ZVZA 1OIEA 5J28A 2WDEA 3DSDA 4KKZA 3P71C 1XZWA 3H66A 3D03A 4UT3B 3PSOA 3HVQA 4XPNA 1S3NA 1U32A 2QJCA 3ZTVA 2WDFA 4V0WA 3PSNA 4V0XA 5IOHA 1QFCA 1QHWA 3ZU0A 5HPEA 4ORCA 4UT2A 2O8GA 4UT3A 2XMOA 1OIDA 1USHA 1MF8A 3RL3A 2QFPA 4TUIA 3N5UA 2NYMC 2Z72A 3KBPA 2Z1AA 4H2IA 4DHLA 2NXFA 4O4KA 3AV0A 3FLOA 5GTUA 3LL8A 2QFRA 4FBQA 4H1YP 3T1IA 1M63A 1KBPA 4MOVA 1W24A 3E0JA 4O43A 4NZVA 5B8IA 4DSYA 4JA9A 2WDCA 1UTEA 3H67A 3IB7A 2Q8UA 3DSCA 1S8EA 1HP1A 4JA7A 3RL4A 2YVTA 2WDDA 2R17A 1S3MA 2GJUA 1HPUA 4G9JA 3QFKA 2P6BA 4H2FA 2O8AA 3IVEA 4LU9A 4Q7FA 4WWLA 3EGHA 3GVEA 1S3LA 3H60A 2BDXA 2DXNA 3QG5C 1FJMA 2JOGA 3C9FA 4I5LC 2BCDA 2IE4C 3E7AA 3QFOA 4H2GA 2HY1A 4KBPA 3C5WC 4UWQA 3H64A 2ZOAA 3EGGA 5JPEA 4MOYA 1T71A 1T70A 3THNA 4O5GA 4ORBA 3H61A 4V0VA 1Z2XA 3TGHA 3RL5A 1UF3A 1Z2WA 2NYLC 4YKEA 4ZX2A 5JJTA 1WARA 1SU1A 1S70A 3DW8C 1AUIA 2HYPA 1XM7A 2YEQA 2AHDA 1WAO1 4B2OA 2IE3C 4IYPC 3CK2A 4HD0A 5EQVA 1II7A 2NPPC 3V4YA 4DT2A 3AUZA 2KKNA 3H68A 3H62B 4ORAA 2ZO9B 3IB8A 4OR9A 3THOB 3QFNA 4H2BA 2ZBMA 3JYFA 3E7BA 3RQZA 1V73A 1TCOA 5F3WA 3IVDA 2A22A 5C1VA 1OI8A 3H63A 4TUGA 5INBA 3K7VC 2DXLA 3ICFA 3H69A 4FCXA 5DNYA 1IT6A 4LACC
chains in the Genus database with same CATH topology
2HYOA 1G5BA 4I5NC 3K7WC 2BQ8X 4IL1A 4FBWA 2USHA 1S95A 4MP0A 5JPFA 2DFJA 3FGAC 4F0ZA 1HO5A 4FBKA 4J6OA 2IAEC 1JK7A 3QFMA 4LTYA 2Z06A 2CV9A 4M0VA 4O24A 1NNWA 4H1SA 4ZVZA 1OIEA 5J28A 2WDEA 3DSDA 4KKZA 3P71C 1XZWA 3H66A 3D03A 4UT3B 3PSOA 3HVQA 4XPNA 1S3NA 1U32A 2QJCA 3ZTVA 2WDFA 4V0WA 3PSNA 4V0XA 5IOHA 1QFCA 1QHWA 3ZU0A 5HPEA 4ORCA 4UT2A 2O8GA 4UT3A 2XMOA 1OIDA 1USHA 1MF8A 3RL3A 2QFPA 4TUIA 3N5UA 2NYMC 2Z72A 3KBPA 2Z1AA 4H2IA 4DHLA 2NXFA 4O4KA 3AV0A 3FLOA 5GTUA 3LL8A 2QFRA 4FBQA 4H1YP 3T1IA 1M63A 1KBPA 4MOVA 1W24A 3E0JA 4O43A 4NZVA 5B8IA 4DSYA 4JA9A 2WDCA 1UTEA 3H67A 3IB7A 2Q8UA 3DSCA 1S8EA 1HP1A 4JA7A 3RL4A 2YVTA 2WDDA 2R17A 1S3MA 2GJUA 1HPUA 4G9JA 3QFKA 2P6BA 4H2FA 2O8AA 3IVEA 4LU9A 4Q7FA 4WWLA 3EGHA 3GVEA 1S3LA 3H60A 2BDXA 2DXNA 3QG5C 1FJMA 2JOGA 3C9FA 4I5LC 2BCDA 2IE4C 3E7AA 3QFOA 4H2GA 2HY1A 4KBPA 3C5WC 4UWQA 3H64A 2ZOAA 3EGGA 5JPEA 4MOYA 1T71A 1T70A 3THNA 4O5GA 4ORBA 3H61A 4V0VA 1Z2XA 3TGHA 3RL5A 1UF3A 1Z2WA 2NYLC 4YKEA 4ZX2A 5JJTA 1WARA 1SU1A 1S70A 3DW8C 1AUIA 2HYPA 1XM7A 2YEQA 2AHDA 1WAO1 4B2OA 2IE3C 4IYPC 3CK2A 4HD0A 5EQVA 1II7A 2NPPC 3V4YA 4DT2A 3AUZA 2KKNA 3H68A 3H62B 4ORAA 2ZO9B 3IB8A 4OR9A 3THOB 3QFNA 4H2BA 2ZBMA 3JYFA 3E7BA 3RQZA 1V73A 1TCOA 5F3WA 3IVDA 2A22A 5C1VA 1OI8A 3H63A 4TUGA 5INBA 3K7VC 2DXLA 3ICFA 3H69A 4FCXA 5DNYA 1IT6A 4LACC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HYO A;  1G5B A;  4I5N C;  3K7W C;  2BQ8 X;  4IL1 A;  4FBW A;  2USH A;  1S95 A;  4MP0 A;  5JPF A;  2DFJ A;  3FGA C;  4F0Z A;  1HO5 A;  4FBK A;  4J6O A;  2IAE C;  1JK7 A;  3QFM A;  4LTY A;  2Z06 A;  2CV9 A;  4M0V A;  4O24 A;  1NNW A;  4H1S A;  4ZVZ A;  1OIE A;  5J28 A;  2WDE A;  3DSD A;  4KKZ A;  3P71 C;  1XZW A;  3H66 A;  4UT3 B;  3PSO A;  3HVQ A;  4XPN A;  1S3N A;  1U32 A;  2QJC A;  3ZTV A;  2WDF A;  4V0W A;  3PSN A;  4V0X A;  5IOH A;  1QFC A;  1QHW A;  3ZU0 A;  5HPE A;  4ORC A;  4UT2 A;  2O8G A;  4UT3 A;  2XMO A;  1OID A;  1USH A;  1MF8 A;  3RL3 A;  2QFP A;  4TUI A;  3N5U A;  2NYM C;  2Z72 A;  3KBP A;  2Z1A A;  4H2I A;  4DHL A;  2NXF A;  4O4K A;  3AV0 A;  5GTU A;  3LL8 A;  2QFR A;  4FBQ A;  4H1Y P;  3T1I A;  1M63 A;  1KBP A;  4MOV A;  1W24 A;  4O43 A;  5B8I A;  4NZV A;  4DSY A;  4JA9 A;  2WDC A;  1UTE A;  3H67 A;  3IB7 A;  2Q8U A;  3DSC A;  1S8E A;  1HP1 A;  4JA7 A;  3RL4 A;  2YVT A;  2WDD A;  2R17 A;  1S3M A;  2GJU A;  1HPU A;  4G9J A;  3QFK A;  2P6B A;  4H2F A;  2O8A A;  3IVE A;  4LU9 A;  4Q7F A;  4WWL A;  3EGH A;  3GVE A;  1S3L A;  3H60 A;  2BDX A;  3QG5 C;  1FJM A;  2JOG A;  3C9F A;  4I5L C;  2BCD A;  2IE4 C;  3E7A A;  3QFO A;  4H2G A;  2HY1 A;  4KBP A;  3C5W C;  4UWQ A;  3H64 A;  3EGG A;  5JPE A;  4MOY A;  1T71 A;  1T70 A;  3THN A;  4O5G A;  4ORB A;  3H61 A;  4V0V A;  1Z2X A;  3TGH A;  3RL5 A;  1UF3 A;  1Z2W A;  2NYL C;  4YKE A;  4ZX2 A;  5JJT A;  1WAR A;  1SU1 A;  1S70 A;  3DW8 C;  1AUI A;  2HYP A;  1XM7 A;  4B2O A;  2AHD A;  1WAO 1;  2IE3 C;  4IYP C;  3CK2 A;  4HD0 A;  5EQV A;  1II7 A;  2NPP C;  3V4Y A;  4DT2 A;  3AUZ A;  2KKN A;  3H68 A;  3H62 B;  4ORA A;  3IB8 A;  4OR9 A;  3THO B;  3QFN A;  4H2B A;  2ZBM A;  3JYF A;  3E7B A;  3RQZ A;  1V73 A;  1TCO A;  5F3W A;  3IVD A;  2A22 A;  5C1V A;  1OI8 A;  3H63 A;  4TUG A;  5INB A;  3K7V C;  3ICF A;  3H69 A;  4FCX A;  5DNY A;  1IT6 A;  4LAC C; 
#chains in the Genus database with same CATH topology
 2HYO A;  1G5B A;  4I5N C;  3K7W C;  2BQ8 X;  4IL1 A;  4FBW A;  2USH A;  1S95 A;  4MP0 A;  5JPF A;  2DFJ A;  3FGA C;  4F0Z A;  1HO5 A;  4FBK A;  4J6O A;  2IAE C;  1JK7 A;  3QFM A;  4LTY A;  2Z06 A;  2CV9 A;  4M0V A;  4O24 A;  1NNW A;  4H1S A;  4ZVZ A;  1OIE A;  5J28 A;  2WDE A;  3DSD A;  4KKZ A;  3P71 C;  1XZW A;  3H66 A;  3D03 A;  4UT3 B;  3PSO A;  3HVQ A;  4XPN A;  1S3N A;  1U32 A;  2QJC A;  3ZTV A;  2WDF A;  4V0W A;  3PSN A;  4V0X A;  5IOH A;  1QFC A;  1QHW A;  3ZU0 A;  5HPE A;  4ORC A;  4UT2 A;  2O8G A;  4UT3 A;  2XMO A;  1OID A;  1USH A;  1MF8 A;  3RL3 A;  2QFP A;  4TUI A;  3N5U A;  2NYM C;  2Z72 A;  3KBP A;  2Z1A A;  4H2I A;  4DHL A;  2NXF A;  4O4K A;  3AV0 A;  3FLO A;  5GTU A;  3LL8 A;  2QFR A;  4FBQ A;  4H1Y P;  3T1I A;  1M63 A;  1KBP A;  4MOV A;  1W24 A;  3E0J A;  4O43 A;  4NZV A;  5B8I A;  4DSY A;  4JA9 A;  2WDC A;  1UTE A;  3H67 A;  3IB7 A;  2Q8U A;  3DSC A;  1S8E A;  1HP1 A;  4JA7 A;  3RL4 A;  2YVT A;  2WDD A;  2R17 A;  1S3M A;  2GJU A;  1HPU A;  4G9J A;  3QFK A;  2P6B A;  4H2F A;  2O8A A;  3IVE A;  4LU9 A;  4Q7F A;  4WWL A;  3EGH A;  3GVE A;  1S3L A;  3H60 A;  2BDX A;  2DXN A;  3QG5 C;  1FJM A;  2JOG A;  3C9F A;  4I5L C;  2BCD A;  2IE4 C;  3E7A A;  3QFO A;  4H2G A;  2HY1 A;  4KBP A;  3C5W C;  4UWQ A;  3H64 A;  2ZOA A;  3EGG A;  5JPE A;  4MOY A;  1T71 A;  1T70 A;  3THN A;  4O5G A;  4ORB A;  3H61 A;  4V0V A;  1Z2X A;  3TGH A;  3RL5 A;  1UF3 A;  1Z2W A;  2NYL C;  4YKE A;  4ZX2 A;  5JJT A;  1WAR A;  1SU1 A;  1S70 A;  3DW8 C;  1AUI A;  2HYP A;  1XM7 A;  2YEQ A;  2AHD A;  1WAO 1;  4B2O A;  2IE3 C;  4IYP C;  3CK2 A;  4HD0 A;  5EQV A;  1II7 A;  2NPP C;  3V4Y A;  4DT2 A;  3AUZ A;  2KKN A;  3H68 A;  3H62 B;  4ORA A;  2ZO9 B;  3IB8 A;  4OR9 A;  3THO B;  3QFN A;  4H2B A;  2ZBM A;  3JYF A;  3E7B A;  3RQZ A;  1V73 A;  1TCO A;  5F3W A;  3IVD A;  2A22 A;  5C1V A;  1OI8 A;  3H63 A;  4TUG A;  5INB A;  3K7V C;  2DXL A;  3ICF A;  3H69 A;  4FCX A;  5DNY A;  1IT6 A;  4LAC C; 
#chains in the Genus database with same CATH homology
 2HYO A;  1G5B A;  4I5N C;  3K7W C;  2BQ8 X;  4IL1 A;  4FBW A;  2USH A;  1S95 A;  4MP0 A;  5JPF A;  2DFJ A;  3FGA C;  4F0Z A;  1HO5 A;  4FBK A;  4J6O A;  2IAE C;  1JK7 A;  3QFM A;  4LTY A;  2Z06 A;  2CV9 A;  4M0V A;  4O24 A;  1NNW A;  4H1S A;  4ZVZ A;  1OIE A;  5J28 A;  2WDE A;  3DSD A;  4KKZ A;  3P71 C;  1XZW A;  3H66 A;  3D03 A;  4UT3 B;  3PSO A;  3HVQ A;  4XPN A;  1S3N A;  1U32 A;  2QJC A;  3ZTV A;  2WDF A;  4V0W A;  3PSN A;  4V0X A;  5IOH A;  1QFC A;  1QHW A;  3ZU0 A;  5HPE A;  4ORC A;  4UT2 A;  2O8G A;  4UT3 A;  2XMO A;  1OID A;  1USH A;  1MF8 A;  3RL3 A;  2QFP A;  4TUI A;  3N5U A;  2NYM C;  2Z72 A;  3KBP A;  2Z1A A;  4H2I A;  4DHL A;  2NXF A;  4O4K A;  3AV0 A;  3FLO A;  5GTU A;  3LL8 A;  2QFR A;  4FBQ A;  4H1Y P;  3T1I A;  1M63 A;  1KBP A;  4MOV A;  1W24 A;  3E0J A;  4O43 A;  4NZV A;  5B8I A;  4DSY A;  4JA9 A;  2WDC A;  1UTE A;  3H67 A;  3IB7 A;  2Q8U A;  3DSC A;  1S8E A;  1HP1 A;  4JA7 A;  3RL4 A;  2YVT A;  2WDD A;  2R17 A;  1S3M A;  2GJU A;  1HPU A;  4G9J A;  3QFK A;  2P6B A;  4H2F A;  2O8A A;  3IVE A;  4LU9 A;  4Q7F A;  4WWL A;  3EGH A;  3GVE A;  1S3L A;  3H60 A;  2BDX A;  2DXN A;  3QG5 C;  1FJM A;  2JOG A;  3C9F A;  4I5L C;  2BCD A;  2IE4 C;  3E7A A;  3QFO A;  4H2G A;  2HY1 A;  4KBP A;  3C5W C;  4UWQ A;  3H64 A;  2ZOA A;  3EGG A;  5JPE A;  4MOY A;  1T71 A;  1T70 A;  3THN A;  4O5G A;  4ORB A;  3H61 A;  4V0V A;  1Z2X A;  3TGH A;  3RL5 A;  1UF3 A;  1Z2W A;  2NYL C;  4YKE A;  4ZX2 A;  5JJT A;  1WAR A;  1SU1 A;  1S70 A;  3DW8 C;  1AUI A;  2HYP A;  1XM7 A;  2YEQ A;  2AHD A;  1WAO 1;  4B2O A;  2IE3 C;  4IYP C;  3CK2 A;  4HD0 A;  5EQV A;  1II7 A;  2NPP C;  3V4Y A;  4DT2 A;  3AUZ A;  2KKN A;  3H68 A;  3H62 B;  4ORA A;  2ZO9 B;  3IB8 A;  4OR9 A;  3THO B;  3QFN A;  4H2B A;  2ZBM A;  3JYF A;  3E7B A;  3RQZ A;  1V73 A;  1TCO A;  5F3W A;  3IVD A;  2A22 A;  5C1V A;  1OI8 A;  3H63 A;  4TUG A;  5INB A;  3K7V C;  2DXL A;  3ICF A;  3H69 A;  4FCX A;  5DNY A;  1IT6 A;  4LAC C; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...