3GVEA

Crystal structure of calcineurin-like phosphoesterase yfkn from bacillus subtilis
Total Genus 103
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
103
sequence length
334
structure length
334
Chain Sequence
PQVHLSILATTDIHANMMDYDYYSDKETADFGLARTAQLIQKHREQNPNTLLVDNGDLIQGNPLGEYAVKYQKDDIISGTKTHPIISVMNALKYDAGTLGNHEFNYGLDFLDGTIKGADFPIVNANVKTTSGENRYTPYVINEKTLIDENGNEQKVKVGYIGFVPPQIMTWDKKNLEGQVQVQDIVESANETIPKMKAEGADVIIALAHTGIEKQAQSSGAENAVFDLATKTKGIDAIISGHQHGLFPSAEYAGVAQFNVEKGTINGIPVVMPSSWGKYLGVIDLKLEKADGSWKVADSKGSIESIAGNVTSRNETVTNTIQQTHQNTLEYVRK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of Calcineurin-like Phosphoesterase from Bacillus subtilis
rcsb
source organism Bacillus subtilis subsp. subtilis
molecule tags Structural genomics, unknown function
molecule keywords YfkN protein
total genus 103
structure length 334
sequence length 334
chains with identical sequence B
ec nomenclature ec 3.1.3.5: 5'-nucleotidase.
pdb deposition date 2009-03-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 3gveA00
2O8AA 3THOB 4H1YP 4O4KA 1T70A 4I5NC 2Z06A 4ORAA 1OI8A 5C1VA 3RL3A 5GTUA 5DNYA 3FGAC 2XMOA 2NPPC 3N5UA 1W24A 1S3LA 1Z2WA 2Z1AA 2ZBMA 5IOHA 4UWQA 4HD0A 3H63A 1T71A 2WDFA 1OIDA 2NXFA 4ZVZA 4FBKA 4F0ZA 5B8IA 2IE4C 1S8EA 4H2IA 4TUIA 4H2BA 3IB7A 3CK2A 2IAEC 2NYMC 1HP1A 3PSOA 1WARA 2O8GA 1NNWA 3K7WC 4JA9A 3E7AA 3JYFA 4OR9A 4H2FA 1G5BA 1Z2XA 4V0WA 4B2OA 5JPEA 4MOYA 4O5GA 3RQZA 4H1SA 3H64A 1S3MA 3LL8A 4MP0A 3H61A 4KBPA 2NYLC 3C5WC 4H2GA 2YVTA 3QFMA 3PSNA 4FCXA 4XPNA 3RL4A 4IYPC 4NZVA 4V0VA 1S95A 4ORBA 2CV9A 5JPFA 3QG5C 3T1IA 1XZWA 2R17A 1IT6A 4UT3B 1SU1A 1TCOA 1FJMA 2QJCA 2A22A 2Z72A 3HVQA 3ICFA 3ZTVA 1AUIA 4KKZA 5HPEA 1USHA 2BCDA 5J28A 3RL5A 4M0VA 1JK7A 4O24A 1UTEA 2HYOA 4LACC 3E7BA 4MOVA 2WDCA 3KBPA 2BQ8X 4DHLA 4G9JA 1HPUA 4Q7FA 2WDDA 2QFPA 3V4YA 4V0XA 3ZU0A 2Q8UA 2DFJA 3H60A 1M63A 5EQVA 4YKEA 1UF3A 2HY1A 1U32A 1HO5A 3QFOA 3THNA 1II7A 3EGGA 4DT2A 5INBA 1QFCA 4ZX2A 4ORCA 1KBPA 3QFKA 5JJTA 3H67A 3IB8A 2GJUA 5F3WA 3DSDA 4I5LC 2BDXA 3AUZA 1OIEA 3GVEA 3H62B 3H69A 3DSCA 2USHA 2QFRA 2KKNA 1XM7A 4J6OA 3EGHA 4O43A 3IVDA 4LTYA 2AHDA 2IE3C 3IVEA 2JOGA 4UT3A 1V73A 4LU9A 3K7VC 2HYPA 4TUGA 1WAO1 1S70A 1MF8A 1QHWA 1S3NA 3H66A 3QFNA 2WDEA 3P71C 3C9FA 4DSYA 2P6BA 4FBWA 4JA7A 4UT2A 4WWLA 3H68A 4FBQA 3DW8C 3TGHA 3AV0A 4IL1A
chains in the Genus database with same CATH superfamily
2O8AA 2DXNA 3THOB 4H1YP 4O4KA 1T70A 4I5NC 2Z06A 4ORAA 1OI8A 5C1VA 3RL3A 5GTUA 5DNYA 3FGAC 2XMOA 2NPPC 3N5UA 1W24A 1S3LA 1Z2WA 2Z1AA 2ZBMA 5IOHA 4UWQA 4HD0A 3H63A 1T71A 2WDFA 1OIDA 2NXFA 4ZVZA 4FBKA 4F0ZA 5B8IA 2IE4C 1S8EA 4H2IA 4TUIA 4H2BA 3IB7A 3CK2A 3D03A 2IAEC 2NYMC 1HP1A 3PSOA 1WARA 2O8GA 1NNWA 3K7WC 4JA9A 3E7AA 3JYFA 4OR9A 4H2FA 1G5BA 1Z2XA 4V0WA 4B2OA 5JPEA 4MOYA 4O5GA 3RQZA 4H1SA 3H64A 1S3MA 3LL8A 4MP0A 3H61A 4KBPA 2NYLC 3C5WC 4H2GA 2YVTA 3QFMA 3PSNA 4FCXA 4XPNA 3RL4A 4IYPC 4NZVA 4V0VA 1S95A 4ORBA 2CV9A 5JPFA 3QG5C 3T1IA 1XZWA 2R17A 1IT6A 4UT3B 1SU1A 1TCOA 1FJMA 2QJCA 2A22A 2Z72A 3HVQA 3ICFA 3ZTVA 1AUIA 4KKZA 5HPEA 1USHA 2BCDA 3E0JA 3RL5A 4M0VA 1JK7A 4O24A 5J28A 1UTEA 2HYOA 4LACC 3E7BA 4MOVA 2WDCA 3KBPA 2BQ8X 4DHLA 4G9JA 1HPUA 2ZOAA 4Q7FA 2WDDA 2QFPA 3V4YA 4V0XA 3ZU0A 2Q8UA 2DFJA 3H60A 1M63A 5EQVA 4YKEA 2ZO9B 1UF3A 2HY1A 1U32A 1HO5A 3QFOA 3THNA 1II7A 3EGGA 4DT2A 5INBA 1QFCA 4ZX2A 4ORCA 1KBPA 3QFKA 5JJTA 3H67A 3IB8A 2GJUA 5F3WA 3DSDA 4I5LC 2BDXA 3AUZA 1OIEA 3GVEA 3H62B 3H69A 3DSCA 2USHA 2QFRA 2KKNA 1XM7A 4J6OA 3EGHA 4O43A 3FLOA 3IVDA 4LTYA 2AHDA 2YEQA 2IE3C 3IVEA 2DXLA 2JOGA 1V73A 4UT3A 4LU9A 3K7VC 2HYPA 4TUGA 1WAO1 1S70A 1MF8A 1QHWA 1S3NA 3H66A 3QFNA 2WDEA 3P71C 3C9FA 4DSYA 2P6BA 4FBWA 4JA7A 4UT2A 4WWLA 3H68A 4FBQA 3DW8C 3TGHA 3AV0A 4IL1A
chains in the Genus database with same CATH topology
2O8AA 2DXNA 3THOB 4H1YP 4O4KA 1T70A 4I5NC 2Z06A 4ORAA 1OI8A 5C1VA 3RL3A 5GTUA 5DNYA 3FGAC 2XMOA 2NPPC 3N5UA 1W24A 1S3LA 1Z2WA 2Z1AA 2ZBMA 5IOHA 4UWQA 4HD0A 3H63A 1T71A 2WDFA 1OIDA 2NXFA 4ZVZA 4FBKA 4F0ZA 5B8IA 2IE4C 1S8EA 4H2IA 4TUIA 4H2BA 3IB7A 3CK2A 3D03A 2IAEC 2NYMC 1HP1A 3PSOA 1WARA 2O8GA 1NNWA 3K7WC 4JA9A 3E7AA 3JYFA 4OR9A 4H2FA 1G5BA 1Z2XA 4V0WA 4B2OA 5JPEA 4MOYA 4O5GA 3RQZA 4H1SA 3H64A 1S3MA 3LL8A 4MP0A 3H61A 4KBPA 2NYLC 3C5WC 4H2GA 2YVTA 3QFMA 3PSNA 4FCXA 4XPNA 3RL4A 4IYPC 4NZVA 4V0VA 1S95A 4ORBA 2CV9A 5JPFA 3QG5C 3T1IA 1XZWA 2R17A 1IT6A 4UT3B 1SU1A 1TCOA 1FJMA 2QJCA 2A22A 2Z72A 3HVQA 3ICFA 3ZTVA 1AUIA 4KKZA 5HPEA 1USHA 2BCDA 3E0JA 3RL5A 4M0VA 1JK7A 4O24A 5J28A 1UTEA 2HYOA 4LACC 3E7BA 4MOVA 2WDCA 3KBPA 2BQ8X 4DHLA 4G9JA 1HPUA 2ZOAA 4Q7FA 2WDDA 2QFPA 3V4YA 4V0XA 3ZU0A 2Q8UA 2DFJA 3H60A 1M63A 5EQVA 4YKEA 2ZO9B 1UF3A 2HY1A 1U32A 1HO5A 3QFOA 3THNA 1II7A 3EGGA 4DT2A 5INBA 1QFCA 4ZX2A 4ORCA 1KBPA 3QFKA 5JJTA 3H67A 3IB8A 2GJUA 5F3WA 3DSDA 4I5LC 2BDXA 3AUZA 1OIEA 3GVEA 3H62B 3H69A 3DSCA 2USHA 2QFRA 2KKNA 1XM7A 4J6OA 3EGHA 4O43A 3FLOA 3IVDA 4LTYA 2AHDA 2YEQA 2IE3C 3IVEA 2DXLA 2JOGA 1V73A 4UT3A 4LU9A 3K7VC 2HYPA 4TUGA 1WAO1 1S70A 1MF8A 1QHWA 1S3NA 3H66A 3QFNA 2WDEA 3P71C 3C9FA 4DSYA 2P6BA 4FBWA 4JA7A 4UT2A 4WWLA 3H68A 4FBQA 3DW8C 3TGHA 3AV0A 4IL1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2O8A A;  3THO B;  4H1Y P;  4O4K A;  1T70 A;  4I5N C;  2Z06 A;  4ORA A;  1OI8 A;  5C1V A;  3RL3 A;  5GTU A;  5DNY A;  3FGA C;  2XMO A;  2NPP C;  3N5U A;  1W24 A;  1S3L A;  1Z2W A;  2Z1A A;  2ZBM A;  5IOH A;  4UWQ A;  4HD0 A;  3H63 A;  1T71 A;  2WDF A;  1OID A;  2NXF A;  4ZVZ A;  4FBK A;  4F0Z A;  5B8I A;  2IE4 C;  1S8E A;  4H2I A;  4TUI A;  4H2B A;  3IB7 A;  3CK2 A;  2IAE C;  2NYM C;  1HP1 A;  3PSO A;  1WAR A;  2O8G A;  1NNW A;  3K7W C;  4JA9 A;  3E7A A;  3JYF A;  4OR9 A;  4H2F A;  1G5B A;  1Z2X A;  4V0W A;  4B2O A;  5JPE A;  4MOY A;  4O5G A;  3RQZ A;  4H1S A;  3H64 A;  1S3M A;  3LL8 A;  4MP0 A;  3H61 A;  4KBP A;  2NYL C;  3C5W C;  4H2G A;  2YVT A;  3QFM A;  3PSN A;  4FCX A;  4XPN A;  3RL4 A;  4IYP C;  4NZV A;  4V0V A;  1S95 A;  4ORB A;  2CV9 A;  5JPF A;  3QG5 C;  3T1I A;  1XZW A;  2R17 A;  1IT6 A;  4UT3 B;  1SU1 A;  1TCO A;  1FJM A;  2QJC A;  2A22 A;  2Z72 A;  3HVQ A;  3ICF A;  3ZTV A;  1AUI A;  4KKZ A;  5HPE A;  1USH A;  2BCD A;  5J28 A;  3RL5 A;  4M0V A;  1JK7 A;  4O24 A;  1UTE A;  2HYO A;  4LAC C;  3E7B A;  4MOV A;  2WDC A;  3KBP A;  2BQ8 X;  4DHL A;  4G9J A;  1HPU A;  4Q7F A;  2WDD A;  2QFP A;  3V4Y A;  4V0X A;  3ZU0 A;  2Q8U A;  2DFJ A;  3H60 A;  1M63 A;  5EQV A;  4YKE A;  1UF3 A;  2HY1 A;  1U32 A;  1HO5 A;  3QFO A;  3THN A;  1II7 A;  3EGG A;  4DT2 A;  5INB A;  1QFC A;  4ZX2 A;  4ORC A;  1KBP A;  3QFK A;  5JJT A;  3H67 A;  3IB8 A;  2GJU A;  5F3W A;  3DSD A;  4I5L C;  2BDX A;  3AUZ A;  1OIE A;  3GVE A;  3H62 B;  3H69 A;  3DSC A;  2USH A;  2QFR A;  2KKN A;  1XM7 A;  4J6O A;  3EGH A;  4O43 A;  3IVD A;  4LTY A;  2AHD A;  2IE3 C;  3IVE A;  2JOG A;  4UT3 A;  1V73 A;  4LU9 A;  3K7V C;  2HYP A;  4TUG A;  1WAO 1;  1S70 A;  1MF8 A;  1QHW A;  1S3N A;  3H66 A;  3QFN A;  2WDE A;  3P71 C;  3C9F A;  4DSY A;  2P6B A;  4FBW A;  4JA7 A;  4UT2 A;  4WWL A;  3H68 A;  4FBQ A;  3DW8 C;  3TGH A;  3AV0 A;  4IL1 A; 
#chains in the Genus database with same CATH topology
 2O8A A;  2DXN A;  3THO B;  4H1Y P;  4O4K A;  1T70 A;  4I5N C;  2Z06 A;  4ORA A;  1OI8 A;  5C1V A;  3RL3 A;  5GTU A;  5DNY A;  3FGA C;  2XMO A;  2NPP C;  3N5U A;  1W24 A;  1S3L A;  1Z2W A;  2Z1A A;  2ZBM A;  5IOH A;  4UWQ A;  4HD0 A;  3H63 A;  1T71 A;  2WDF A;  1OID A;  2NXF A;  4ZVZ A;  4FBK A;  4F0Z A;  5B8I A;  2IE4 C;  1S8E A;  4H2I A;  4TUI A;  4H2B A;  3IB7 A;  3CK2 A;  3D03 A;  2IAE C;  2NYM C;  1HP1 A;  3PSO A;  1WAR A;  2O8G A;  1NNW A;  3K7W C;  4JA9 A;  3E7A A;  3JYF A;  4OR9 A;  4H2F A;  1G5B A;  1Z2X A;  4V0W A;  4B2O A;  5JPE A;  4MOY A;  4O5G A;  3RQZ A;  4H1S A;  3H64 A;  1S3M A;  3LL8 A;  4MP0 A;  3H61 A;  4KBP A;  2NYL C;  3C5W C;  4H2G A;  2YVT A;  3QFM A;  3PSN A;  4FCX A;  4XPN A;  3RL4 A;  4IYP C;  4NZV A;  4V0V A;  1S95 A;  4ORB A;  2CV9 A;  5JPF A;  3QG5 C;  3T1I A;  1XZW A;  2R17 A;  1IT6 A;  4UT3 B;  1SU1 A;  1TCO A;  1FJM A;  2QJC A;  2A22 A;  2Z72 A;  3HVQ A;  3ICF A;  3ZTV A;  1AUI A;  4KKZ A;  5HPE A;  1USH A;  2BCD A;  3E0J A;  3RL5 A;  4M0V A;  1JK7 A;  4O24 A;  5J28 A;  1UTE A;  2HYO A;  4LAC C;  3E7B A;  4MOV A;  2WDC A;  3KBP A;  2BQ8 X;  4DHL A;  4G9J A;  1HPU A;  2ZOA A;  4Q7F A;  2WDD A;  2QFP A;  3V4Y A;  4V0X A;  3ZU0 A;  2Q8U A;  2DFJ A;  3H60 A;  1M63 A;  5EQV A;  4YKE A;  2ZO9 B;  1UF3 A;  2HY1 A;  1U32 A;  1HO5 A;  3QFO A;  3THN A;  1II7 A;  3EGG A;  4DT2 A;  5INB A;  1QFC A;  4ZX2 A;  4ORC A;  1KBP A;  3QFK A;  5JJT A;  3H67 A;  3IB8 A;  2GJU A;  5F3W A;  3DSD A;  4I5L C;  2BDX A;  3AUZ A;  1OIE A;  3GVE A;  3H62 B;  3H69 A;  3DSC A;  2USH A;  2QFR A;  2KKN A;  1XM7 A;  4J6O A;  3EGH A;  4O43 A;  3FLO A;  3IVD A;  4LTY A;  2AHD A;  2YEQ A;  2IE3 C;  3IVE A;  2DXL A;  2JOG A;  1V73 A;  4UT3 A;  4LU9 A;  3K7V C;  2HYP A;  4TUG A;  1WAO 1;  1S70 A;  1MF8 A;  1QHW A;  1S3N A;  3H66 A;  3QFN A;  2WDE A;  3P71 C;  3C9F A;  4DSY A;  2P6B A;  4FBW A;  4JA7 A;  4UT2 A;  4WWL A;  3H68 A;  4FBQ A;  3DW8 C;  3TGH A;  3AV0 A;  4IL1 A; 
#chains in the Genus database with same CATH homology
 2O8A A;  2DXN A;  3THO B;  4H1Y P;  4O4K A;  1T70 A;  4I5N C;  2Z06 A;  4ORA A;  1OI8 A;  5C1V A;  3RL3 A;  5GTU A;  5DNY A;  3FGA C;  2XMO A;  2NPP C;  3N5U A;  1W24 A;  1S3L A;  1Z2W A;  2Z1A A;  2ZBM A;  5IOH A;  4UWQ A;  4HD0 A;  3H63 A;  1T71 A;  2WDF A;  1OID A;  2NXF A;  4ZVZ A;  4FBK A;  4F0Z A;  5B8I A;  2IE4 C;  1S8E A;  4H2I A;  4TUI A;  4H2B A;  3IB7 A;  3CK2 A;  3D03 A;  2IAE C;  2NYM C;  1HP1 A;  3PSO A;  1WAR A;  2O8G A;  1NNW A;  3K7W C;  4JA9 A;  3E7A A;  3JYF A;  4OR9 A;  4H2F A;  1G5B A;  1Z2X A;  4V0W A;  4B2O A;  5JPE A;  4MOY A;  4O5G A;  3RQZ A;  4H1S A;  3H64 A;  1S3M A;  3LL8 A;  4MP0 A;  3H61 A;  4KBP A;  2NYL C;  3C5W C;  4H2G A;  2YVT A;  3QFM A;  3PSN A;  4FCX A;  4XPN A;  3RL4 A;  4IYP C;  4NZV A;  4V0V A;  1S95 A;  4ORB A;  2CV9 A;  5JPF A;  3QG5 C;  3T1I A;  1XZW A;  2R17 A;  1IT6 A;  4UT3 B;  1SU1 A;  1TCO A;  1FJM A;  2QJC A;  2A22 A;  2Z72 A;  3HVQ A;  3ICF A;  3ZTV A;  1AUI A;  4KKZ A;  5HPE A;  1USH A;  2BCD A;  3E0J A;  3RL5 A;  4M0V A;  1JK7 A;  4O24 A;  5J28 A;  1UTE A;  2HYO A;  4LAC C;  3E7B A;  4MOV A;  2WDC A;  3KBP A;  2BQ8 X;  4DHL A;  4G9J A;  1HPU A;  2ZOA A;  4Q7F A;  2WDD A;  2QFP A;  3V4Y A;  4V0X A;  3ZU0 A;  2Q8U A;  2DFJ A;  3H60 A;  1M63 A;  5EQV A;  4YKE A;  2ZO9 B;  1UF3 A;  2HY1 A;  1U32 A;  1HO5 A;  3QFO A;  3THN A;  1II7 A;  3EGG A;  4DT2 A;  5INB A;  1QFC A;  4ZX2 A;  4ORC A;  1KBP A;  3QFK A;  5JJT A;  3H67 A;  3IB8 A;  2GJU A;  5F3W A;  3DSD A;  4I5L C;  2BDX A;  3AUZ A;  1OIE A;  3GVE A;  3H62 B;  3H69 A;  3DSC A;  2USH A;  2QFR A;  2KKN A;  1XM7 A;  4J6O A;  3EGH A;  4O43 A;  3FLO A;  3IVD A;  4LTY A;  2AHD A;  2YEQ A;  2IE3 C;  3IVE A;  2DXL A;  2JOG A;  1V73 A;  4UT3 A;  4LU9 A;  3K7V C;  2HYP A;  4TUG A;  1WAO 1;  1S70 A;  1MF8 A;  1QHW A;  1S3N A;  3H66 A;  3QFN A;  2WDE A;  3P71 C;  3C9F A;  4DSY A;  2P6B A;  4FBW A;  4JA7 A;  4UT2 A;  4WWL A;  3H68 A;  4FBQ A;  3DW8 C;  3TGH A;  3AV0 A;  4IL1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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