3GW1A

The structure of the caulobacter crescentus clps protease adaptor protein in complex with fgg tripeptide
Total Genus 27
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
82
structure length
82
Chain Sequence
PSLYRVLILNDDYTPMEFVVYVLERFFNKSREDATRIMLHVHQNGVGVCGVYTYEVAETKVAQVIDSARRHQHPLQCTMEKD
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Peptide binding protein
molecule keywords ATP-dependent Clp protease adapter protein clpS
publication title Molecular basis of substrate selection by the N-end rule adaptor protein ClpS.
pubmed doi rcsb
source organism Caulobacter vibrioides
total genus 27
structure length 82
sequence length 82
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-03-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02617 ClpS ATP-dependent Clp protease adaptor protein ClpS
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1390.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal Protein L30; Chain: A, 3gw1A00
1R6OC 2W9RA 3O1FB 1MBVB 2WA8A 3GW1A 1MBXC 1LZWA 3O2BA 4YJMA 3G19A 1R6QC 4YKAA 1RQSA 1DD3A 3G1BA 3GQ0A 3O2OA 1RQVA 2WA9A 1RQUA 4YJXA 1MBUC 3O2HA 3DNJA 1CTFA 3G3PA 1DD4A 3O1FA 1MG9A 3GQ1A
chains in the Genus database with same CATH superfamily
1YHQW 3CCVW 3W7SA 1KC8X 3G71W 4WFAW 3PIPW 1VQ7W 5GAHa 1MWRA 5JVGW 4WFBW 1BXYA 5M19A 1Q7YX 1W2BV 1Q82X 3D3IA 3GQ0A 1M1KX 1RQVA 5CA3A 3CXCV 4WF9W 1MBUC 1CTFA 1VQOW 5HL7W 2ZJPW 1S72W 3ZFZA 4UY8Z 3O1FB 1JJ2V 1VQ6W 4CJNA 1YITW 1MBXC 1VQ9W 3CCJW 1MWTA 2QEXW 3CD6W 4YJMA 1MWSA 2OTJW 1RQSA 4WFNW 3G1BA 5DM6W 1MWUA 3W7WA 5GW7A 2WA9A 1RQUA 3ZG0A 1QVGV 4YJXA 3O2HA 3CCUW 1DD4A 1VQ4W 4IO9W 3CC2W 1YJWW 1K73X 1R6OC 2W9RA 2ZJRW 2QA4W 1MBVB 4IOAW 2WA8A 3CCRW 3CC7W 1VQKW 1QVFV 3CCSW 5M1AA 3I56W 2OTLW 1VQNW 3CC4W 1VQQA 3J7ZZ 1DD3A 1VQ8W 1YIJW 3W7UA 4BL3A 3CPWV 3G6EW 1YI2W 3G3PA 1N8RX 3CF5W 1K8AX 3W7XA 5GADa 3CCQW 2ZJQW 1VQMW 1VQ5W 5M18A 3CMAW 3G4SW 4WCEW 4DKIA 3CMEW 1YJNW 3ZG5A 3GW1A 5GAGa 3DLLW 1KQSV 1LZWA 3O2BA 3PIOW 1Q81X 3OW2V 1K9MX 3CCEW 3G19A 1VQPW 1R6QC 4YKAA 4CPKA 4U67W 1KD1X 1M90X 3CCLW 3CCMW 4BL2A 5GAEa 3O2OA 1Q86X 3DNJA 1NJIX 1VQLW 4IOCW 1YJ9W 3O1FA 1MG9A 3W7TA 3GQ1A 3I55W 5JVHW 5DM7W
chains in the Genus database with same CATH topology
1R6OC 2W9RA 3O1FB 1MBVB 2WA8A 3GW1A 1MBXC 1LZWA 3O2BA 4YJMA 3G19A 1R6QC 4YKAA 1RQSA 1DD3A 3G1BA 3GQ0A 3O2OA 1RQVA 2WA9A 1RQUA 4YJXA 1MBUC 3O2HA 3DNJA 1CTFA 3G3PA 1DD4A 3O1FA 1MG9A 3GQ1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1R6O C;  2W9R A;  3O1F B;  1MBV B;  2WA8 A;  3GW1 A;  1MBX C;  1LZW A;  3O2B A;  4YJM A;  3G19 A;  1R6Q C;  4YKA A;  1RQS A;  1DD3 A;  3G1B A;  3GQ0 A;  3O2O A;  1RQV A;  2WA9 A;  1RQU A;  4YJX A;  1MBU C;  3O2H A;  3DNJ A;  1CTF A;  3G3P A;  1DD4 A;  3O1F A;  1MG9 A;  3GQ1 A; 
#chains in the Genus database with same CATH topology
 1YHQ W;  3CCV W;  3W7S A;  1KC8 X;  3G71 W;  4WFA W;  3PIP W;  1VQ7 W;  5GAH a;  1MWR A;  5JVG W;  4WFB W;  1BXY A;  5M19 A;  1Q7Y X;  1W2B V;  1Q82 X;  3D3I A;  3GQ0 A;  1M1K X;  1RQV A;  5CA3 A;  3CXC V;  4WF9 W;  1MBU C;  1CTF A;  1VQO W;  5HL7 W;  2ZJP W;  1S72 W;  3ZFZ A;  4UY8 Z;  3O1F B;  1JJ2 V;  1VQ6 W;  4CJN A;  1YIT W;  1MBX C;  1VQ9 W;  3CCJ W;  1MWT A;  2QEX W;  3CD6 W;  4YJM A;  1MWS A;  2OTJ W;  1RQS A;  4WFN W;  3G1B A;  5DM6 W;  1MWU A;  3W7W A;  5GW7 A;  2WA9 A;  1RQU A;  3ZG0 A;  1QVG V;  4YJX A;  3O2H A;  3CCU W;  1DD4 A;  1VQ4 W;  4IO9 W;  3CC2 W;  1YJW W;  1K73 X;  1R6O C;  2W9R A;  2ZJR W;  2QA4 W;  1MBV B;  4IOA W;  2WA8 A;  3CCR W;  3CC7 W;  1VQK W;  1QVF V;  3CCS W;  5M1A A;  3I56 W;  2OTL W;  1VQN W;  3CC4 W;  1VQQ A;  3J7Z Z;  1DD3 A;  1VQ8 W;  1YIJ W;  3W7U A;  4BL3 A;  3CPW V;  3G6E W;  1YI2 W;  3G3P A;  1N8R X;  3CF5 W;  1K8A X;  3W7X A;  5GAD a;  3CCQ W;  2ZJQ W;  1VQM W;  1VQ5 W;  5M18 A;  3CMA W;  3G4S W;  4WCE W;  4DKI A;  3CME W;  1YJN W;  3ZG5 A;  3GW1 A;  5GAG a;  3DLL W;  1KQS V;  1LZW A;  3O2B A;  3PIO W;  1Q81 X;  3OW2 V;  1K9M X;  3CCE W;  3G19 A;  1VQP W;  1R6Q C;  4YKA A;  4CPK A;  4U67 W;  1KD1 X;  1M90 X;  3CCL W;  3CCM W;  4BL2 A;  5GAE a;  3O2O A;  1Q86 X;  3DNJ A;  1NJI X;  1VQL W;  4IOC W;  1YJ9 W;  3O1F A;  1MG9 A;  3W7T A;  3GQ1 A;  3I55 W;  5JVH W;  5DM7 W; 
#chains in the Genus database with same CATH homology
 1R6O C;  2W9R A;  3O1F B;  1MBV B;  2WA8 A;  3GW1 A;  1MBX C;  1LZW A;  3O2B A;  4YJM A;  3G19 A;  1R6Q C;  4YKA A;  1RQS A;  1DD3 A;  3G1B A;  3GQ0 A;  3O2O A;  1RQV A;  2WA9 A;  1RQU A;  4YJX A;  1MBU C;  3O2H A;  3DNJ A;  1CTF A;  3G3P A;  1DD4 A;  3O1F A;  1MG9 A;  3GQ1 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...