3GXEA

Complex of a low affinity collagen site with the fibronectin 8-9fni domain pair
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
87
structure length
87
Chain Sequence
DQCIVDDITYNVQDTFHKKHEEGHMLNCTCFGQGRGRWKCDPVDQCQDSETGTFYQIGDSWEKYVHGVRYQCYCYGRGIGEWHCQPL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Cell adhesion
molecule keywords Fibronectin
publication title Structural analysis of collagen type I interactions with human fibronectin reveals a cooperative binding mode
pubmed doi rcsb
source organism Homo sapiens
total genus 14
structure length 87
sequence length 87
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-04-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00039 fn1 Fibronectin type I domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 3gxeA01
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 3gxeA02
1E5GA 2KMSA 1QUBA 3MQLA 4B2SA 4J38B 2MCYA 4C16A 1OJVA 1QO6A 2JGXA 1OK1A 1ZJKA 3RJ3D 4PZ5A 1HFIA 5HZPB 2MCZA 2RKZA 4KKDA 3ZRZA 1C1ZA 3EJHA 2O39C 1H03P 2W80A 2XWJI 3IU3I 4AYMA 2RLPA 1FBRA 1MD7A 3M7PA 2V8EA 3T5OA 1OK9A 3INBC 1GPZA 4AYDA 2XRDA 4FXGG 2BZMA 2EHFA 1NWVA 3KZJA 4WJG2 4YNXA 4F4OC 3CALA 1TPNA 1H04P 1E8BA 3SW0X 3KXVA 1QGBA 3TVJA 4LOSA 1TPMA 5HYTB 2XWBF 1TPGA 1PPQA 1HFHA 2CG6A 2RKYA 1SRZA 1ELVA 1MD8A 4CSYA 3L89M 2A55A 3ZD2A 2YBYA 5FO8C 2EC3A 3OEDC 3GXEA 3GOVA 1OJWA 4ZH1D 5JPMG 4A5WB 1OJYA 4B2RA 2ERJA 1CKLA 4IGDA 1GHQB 2G7IA 2W81A 1G4FA 2XQWC 1GKNA 3O8EB 3R62A 5HYUB 1H2PP 3ERBA 4JHSA 4K12A 1Z92B 4MUCA 1U5MA 1VVCA 1LY2A 2JGWA 4LOTA 1O9AA 5I0QB 2B5ID 1VVDA 1OK2A 2QY0A 2XRBA 1GKGA 2YRAA 2WIIC 2IZ3A 1E88A 2JRAA 2CG7A 2LOJA 1SS2A 4AYEA 3OXUD 1Q3XA 4DJZA 5HYPA 2RL0A 2IZ4A 1H2QP 2CKUA 1UOTP 1HCCA 4ONTD 3NFPI 3IX0A 1OK3A 2KRIA 2UWNA 3OP8A 4AYIA 1G4GA 2RLQA 3ZD1A
chains in the Genus database with same CATH superfamily
1E5GA 2KMSA 3ZLDA 1QUBA 3MQLA 4B2SA 4J38B 2MCYA 4C16A 3F6KA 1OJVA 1QO6A 2JGXA 1OK1A 3FGTA 1ZJKA 3RJ3D 4PZ5A 2Y8TA 1HFIA 5HZPB 2MCZA 2RKZA 4KKDA 3ZRZA 3WSXA 1C1ZA 3EJHA 2O39C 1H03P 2W80A 2XWJI 3IU3I 4AYMA 2RLPA 1FBRA 1MD7A 3M7PA 5DN4A 3VWOA 2V8EA 3T5OA 4APLA 3NJAA 4BWCA 1OK9A 3INBC 1GPZA 4AYDA 2XRDA 4FXGG 3FGRA 2BZMA 2EHFA 1NWVA 3KZJA 4WJG2 4YNXA 4F4OC 3CALA 1TPNA 1H04P 3ZLEA 1E8BA 3SW0X 3KXVA 1QGBA 3TVJA 4LOSA 1TPMA 5HYTB 2XWBF 1TPGA 1PPQA 1HFHA 2CG6A 2RKYA 1RLHA 1SRZA 1ELVA 1MD8A 4CSYA 3L89M 2A55A 3ZD2A 2YBYA 5FO8C 2EC3A 3OEDC 3GXEA 3WSYA 3GOVA 1OJWA 2X2ZA 2Y8SA 4ZH1D 5JPMG 4A5WB 1OJYA 4B2RA 2ERJA 1CKLA 4IGDA 3K3TA 4MSLA 1GHQB 2G7IA 2W81A 1G4FA 2XQWC 1GKNA 3O8EB 3R62A 5HYUB 1H2PP 3ERBA 4JHSA 4K12A 1Z92B 4MUCA 1U5MA 1VVCA 2I2LA 1LY2A 2JGWA 4LOTA 1O9AA 4PO7A 5DN5A 5I0QB 2ZYCA 2B5ID 1VVDA 1OK2A 2QY0A 2XRBA 1GKGA 2YRAA 2WIIC 2IZ3A 1E88A 2JRAA 2CG7A 2LOJA 1SS2A 4AYEA 3OXUD 3CI0J 1Q3XA 4DJZA 2Y8RA 5HYPA 2RL0A 2IZ4A 4N7EA 1H2QP 2CKUA 1UOTP 1HCCA 4ONTD 3NFPI 3IX0A 1OK3A 2KRIA 4YIZA 2UWNA 3OP8A 4AYIA 1G4GA 2RLQA 3ZD1A
chains in the Genus database with same CATH topology
1E5GA 2KMSA 1QUBA 3MQLA 4B2SA 4J38B 2MCYA 4C16A 1OJVA 1QO6A 2JGXA 1OK1A 1ZJKA 3RJ3D 4PZ5A 1HFIA 5HZPB 2MCZA 2RKZA 4KKDA 3ZRZA 1C1ZA 3EJHA 2O39C 1H03P 2W80A 2XWJI 3IU3I 4AYMA 2RLPA 1FBRA 1MD7A 3M7PA 2V8EA 3T5OA 1OK9A 3INBC 1GPZA 4AYDA 2XRDA 4FXGG 2BZMA 2EHFA 1NWVA 3KZJA 4WJG2 4YNXA 4F4OC 3CALA 1TPNA 1H04P 1E8BA 3SW0X 3KXVA 1QGBA 3TVJA 4LOSA 1TPMA 5HYTB 2XWBF 1TPGA 1PPQA 1HFHA 2CG6A 2RKYA 1SRZA 1ELVA 1MD8A 4CSYA 3L89M 2A55A 3ZD2A 2YBYA 5FO8C 2EC3A 3OEDC 3GXEA 3GOVA 1OJWA 4ZH1D 5JPMG 4A5WB 1OJYA 4B2RA 2ERJA 1CKLA 4IGDA 1GHQB 2G7IA 2W81A 1G4FA 2XQWC 1GKNA 3O8EB 3R62A 5HYUB 1H2PP 3ERBA 4JHSA 4K12A 1Z92B 4MUCA 1U5MA 1VVCA 1LY2A 2JGWA 4LOTA 1O9AA 5I0QB 2B5ID 1VVDA 1OK2A 2QY0A 2XRBA 1GKGA 2YRAA 2WIIC 2IZ3A 1E88A 2JRAA 2CG7A 2LOJA 1SS2A 4AYEA 3OXUD 1Q3XA 4DJZA 5HYPA 2RL0A 2IZ4A 1H2QP 2CKUA 1UOTP 1HCCA 4ONTD 3NFPI 3IX0A 1OK3A 2KRIA 2UWNA 3OP8A 4AYIA 1G4GA 2RLQA 3ZD1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1E5G A;  2KMS A;  1QUB A;  3MQL A;  4B2S A;  4J38 B;  2MCY A;  4C16 A;  1OJV A;  1QO6 A;  2JGX A;  1OK1 A;  1ZJK A;  3RJ3 D;  4PZ5 A;  1HFI A;  5HZP B;  2MCZ A;  2RKZ A;  4KKD A;  3ZRZ A;  1C1Z A;  3EJH A;  2O39 C;  1H03 P;  2W80 A;  2XWJ I;  3IU3 I;  4AYM A;  2RLP A;  1FBR A;  1MD7 A;  3M7P A;  2V8E A;  3T5O A;  1OK9 A;  3INB C;  1GPZ A;  4AYD A;  2XRD A;  4FXG G;  2BZM A;  2EHF A;  1NWV A;  3KZJ A;  4WJG 2;  4YNX A;  4F4O C;  3CAL A;  1TPN A;  1H04 P;  1E8B A;  3SW0 X;  3KXV A;  1QGB A;  3TVJ A;  4LOS A;  1TPM A;  5HYT B;  2XWB F;  1TPG A;  1PPQ A;  1HFH A;  2CG6 A;  2RKY A;  1SRZ A;  1ELV A;  1MD8 A;  4CSY A;  3L89 M;  2A55 A;  3ZD2 A;  2YBY A;  5FO8 C;  2EC3 A;  3OED C;  3GXE A;  3GOV A;  1OJW A;  4ZH1 D;  5JPM G;  4A5W B;  1OJY A;  4B2R A;  2ERJ A;  1CKL A;  4IGD A;  1GHQ B;  2G7I A;  2W81 A;  1G4F A;  2XQW C;  1GKN A;  3O8E B;  3R62 A;  5HYU B;  1H2P P;  3ERB A;  4JHS A;  4K12 A;  1Z92 B;  4MUC A;  1U5M A;  1VVC A;  1LY2 A;  2JGW A;  4LOT A;  1O9A A;  5I0Q B;  2B5I D;  1VVD A;  1OK2 A;  2QY0 A;  2XRB A;  1GKG A;  2YRA A;  2WII C;  2IZ3 A;  1E88 A;  2JRA A;  2CG7 A;  2LOJ A;  1SS2 A;  4AYE A;  3OXU D;  1Q3X A;  4DJZ A;  5HYP A;  2RL0 A;  2IZ4 A;  1H2Q P;  2CKU A;  1UOT P;  1HCC A;  4ONT D;  3NFP I;  3IX0 A;  1OK3 A;  2KRI A;  2UWN A;  3OP8 A;  4AYI A;  1G4G A;  2RLQ A;  3ZD1 A; 
#chains in the Genus database with same CATH topology
 1E5G A;  2KMS A;  3ZLD A;  1QUB A;  3MQL A;  4B2S A;  4J38 B;  2MCY A;  4C16 A;  3F6K A;  1OJV A;  1QO6 A;  2JGX A;  1OK1 A;  3FGT A;  1ZJK A;  3RJ3 D;  4PZ5 A;  2Y8T A;  1HFI A;  5HZP B;  2MCZ A;  2RKZ A;  4KKD A;  3ZRZ A;  3WSX A;  1C1Z A;  3EJH A;  2O39 C;  1H03 P;  2W80 A;  2XWJ I;  3IU3 I;  4AYM A;  2RLP A;  1FBR A;  1MD7 A;  3M7P A;  5DN4 A;  3VWO A;  2V8E A;  3T5O A;  4APL A;  3NJA A;  4BWC A;  1OK9 A;  3INB C;  1GPZ A;  4AYD A;  2XRD A;  4FXG G;  3FGR A;  2BZM A;  2EHF A;  1NWV A;  3KZJ A;  4WJG 2;  4YNX A;  4F4O C;  3CAL A;  1TPN A;  1H04 P;  3ZLE A;  1E8B A;  3SW0 X;  3KXV A;  1QGB A;  3TVJ A;  4LOS A;  1TPM A;  5HYT B;  2XWB F;  1TPG A;  1PPQ A;  1HFH A;  2CG6 A;  2RKY A;  1RLH A;  1SRZ A;  1ELV A;  1MD8 A;  4CSY A;  3L89 M;  2A55 A;  3ZD2 A;  2YBY A;  5FO8 C;  2EC3 A;  3OED C;  3GXE A;  3WSY A;  3GOV A;  1OJW A;  2X2Z A;  2Y8S A;  4ZH1 D;  5JPM G;  4A5W B;  1OJY A;  4B2R A;  2ERJ A;  1CKL A;  4IGD A;  3K3T A;  4MSL A;  1GHQ B;  2G7I A;  2W81 A;  1G4F A;  2XQW C;  1GKN A;  3O8E B;  3R62 A;  5HYU B;  1H2P P;  3ERB A;  4JHS A;  4K12 A;  1Z92 B;  4MUC A;  1U5M A;  1VVC A;  2I2L A;  1LY2 A;  2JGW A;  4LOT A;  1O9A A;  4PO7 A;  5DN5 A;  5I0Q B;  2ZYC A;  2B5I D;  1VVD A;  1OK2 A;  2QY0 A;  2XRB A;  1GKG A;  2YRA A;  2WII C;  2IZ3 A;  1E88 A;  2JRA A;  2CG7 A;  2LOJ A;  1SS2 A;  4AYE A;  3OXU D;  3CI0 J;  1Q3X A;  4DJZ A;  2Y8R A;  5HYP A;  2RL0 A;  2IZ4 A;  4N7E A;  1H2Q P;  2CKU A;  1UOT P;  1HCC A;  4ONT D;  3NFP I;  3IX0 A;  1OK3 A;  2KRI A;  4YIZ A;  2UWN A;  3OP8 A;  4AYI A;  1G4G A;  2RLQ A;  3ZD1 A; 
#chains in the Genus database with same CATH homology
 1E5G A;  2KMS A;  1QUB A;  3MQL A;  4B2S A;  4J38 B;  2MCY A;  4C16 A;  1OJV A;  1QO6 A;  2JGX A;  1OK1 A;  1ZJK A;  3RJ3 D;  4PZ5 A;  1HFI A;  5HZP B;  2MCZ A;  2RKZ A;  4KKD A;  3ZRZ A;  1C1Z A;  3EJH A;  2O39 C;  1H03 P;  2W80 A;  2XWJ I;  3IU3 I;  4AYM A;  2RLP A;  1FBR A;  1MD7 A;  3M7P A;  2V8E A;  3T5O A;  1OK9 A;  3INB C;  1GPZ A;  4AYD A;  2XRD A;  4FXG G;  2BZM A;  2EHF A;  1NWV A;  3KZJ A;  4WJG 2;  4YNX A;  4F4O C;  3CAL A;  1TPN A;  1H04 P;  1E8B A;  3SW0 X;  3KXV A;  1QGB A;  3TVJ A;  4LOS A;  1TPM A;  5HYT B;  2XWB F;  1TPG A;  1PPQ A;  1HFH A;  2CG6 A;  2RKY A;  1SRZ A;  1ELV A;  1MD8 A;  4CSY A;  3L89 M;  2A55 A;  3ZD2 A;  2YBY A;  5FO8 C;  2EC3 A;  3OED C;  3GXE A;  3GOV A;  1OJW A;  4ZH1 D;  5JPM G;  4A5W B;  1OJY A;  4B2R A;  2ERJ A;  1CKL A;  4IGD A;  1GHQ B;  2G7I A;  2W81 A;  1G4F A;  2XQW C;  1GKN A;  3O8E B;  3R62 A;  5HYU B;  1H2P P;  3ERB A;  4JHS A;  4K12 A;  1Z92 B;  4MUC A;  1U5M A;  1VVC A;  1LY2 A;  2JGW A;  4LOT A;  1O9A A;  5I0Q B;  2B5I D;  1VVD A;  1OK2 A;  2QY0 A;  2XRB A;  1GKG A;  2YRA A;  2WII C;  2IZ3 A;  1E88 A;  2JRA A;  2CG7 A;  2LOJ A;  1SS2 A;  4AYE A;  3OXU D;  1Q3X A;  4DJZ A;  5HYP A;  2RL0 A;  2IZ4 A;  1H2Q P;  2CKU A;  1UOT P;  1HCC A;  4ONT D;  3NFP I;  3IX0 A;  1OK3 A;  2KRI A;  2UWN A;  3OP8 A;  4AYI A;  1G4G A;  2RLQ A;  3ZD1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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