3GZXA

Crystal structure of the biphenyl dioxygenase in complex with biphenyl from comamonas testosteroni sp. strain b-356
Total Genus 144
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
144
sequence length
440
structure length
440
Chain Sequence
NWTPDAIRALVDQDNGKLDARIYADQDLYQLELERVFGRSWLMLGHETHIPKIGDYLTTYMGEDPVIMVRQKDQSIKVFLNQCRHRGMRIVRSDGGNAKAFTCTYHGWAYDIAGNLVNVPFEKEAFCDKKEGDCGFDKADWGPLQARVETYKGLVFANWDPEAPDLKTYLSDAMPYMDVMLDRTEAGTEAIGGIQKWVIPCNWKFAAEQFCSDMYHAGTMSHLSGVLAGLPPEMDLTQIQLSKNGNQFRSAWGGHGAGWFINDSSILLSVVGPKITQYWTQGPAAEKAARRVPQLPILDMFGQHMTVFPTCSFLPGINTIRTWHPRGPNEVEVWAFVLVDADAPEDIKEEFRLQNIRTFNAGGVFEQDDGENWVEIQRVMRGHKAKSTSLCAKMGLNVPNKNNPAYPGKTAYVYAEEAARGMYHHWSRMMSEPSWDTLKP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Biphenyl dioxygenase subunit alpha
publication title Structural Characterization of Pandoraea pnomenusa B-356 Biphenyl Dioxygenase Reveals Features of Potent Polychlorinated Biphenyl-Degrading Enzymes
pubmed doi rcsb
source organism Comamonas testosteroni
total genus 144
structure length 440
sequence length 440
ec nomenclature ec 1.14.12.18: Biphenyl 2,3-dioxygenase.
pdb deposition date 2009-04-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 3gzxA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 3gzxA01
2E75D 1ULJA 2NVEA 1NTZE 1PPJE 4HM3A 3H1KE 4HM6A 1SJGA 1O7GA 4NBAA 4NB8D 2I7FA 2QPZA 4PD4E 1O7HA 3VMHD 2HMLA 2DE6A 2JZAA 3EN1A 3BCCE 5BOKA 3GCEA 2BMRA 2DE7D 4NBAD 1SQXE 4HM0A 4OGQD 3L73E 2DE6D 3DQYA 3H1HE 5AEUA 1Z01A 1FQTA 1NDOA 2XRXA 1NU1E 1PP9E 3GL0A 4NB9D 3VMHA 1ULIA 2HMJA 4QUQA 1G8JB 2HMKA 4QDFA 2QJPC 3L71E 5AEWA 3VMGA 2XSHA 1O7WA 3H1LE 3D89A 1BCCE 3L72E 3GKEA 1SQBE 4H13D 1G8KB 1WQLA 2E74D 2D2CD 3L75E 2IBZE 3GOBA 3CX5E 4PV1D 5KLVE 2HMNA 3EQQA 1RIEA 3GB4A 3TGUE 1EG9A 4NBHA 4U3FE 4NBBA 2E4PA 2E4QA 1VCKA 3C0DA 3L70E 4QUPA 4QURA 4AIVA 1NTKE 4NBHD 1NTME 1Q90C 2YFLA 4QCKA 4NBBD 2QJYC 1NYKA 1O7MA 1VM9A 5HL4A 2B24A 1P84E 2DE5A 1RFSA 4H44D 1Z02A 3VMGD 1KYOE 3GZYA 2FYUE 2YVJB 2ZYLA 3GKQA 3GL2A 2NUMA 2GBWA 2DE5D 2Q3WA 1SQVE 2GBXA 4NBGA 3L74E 2JO6A 4NBEA 2HMMA 1VF5D 4QDCA 2NWFA 4HM4A 3GTSA 3FOUA 3VCAA 4NBGD 2BCCE 3GZXA 4NB8A 3H1IE 4NBED 1BE3E 3N0QA 4NBDA 1JM1A 4HM1A 1O7PA 3AZCA 4HM2A 4H0LD 5CXMA 1KB9E 2DE7A 4HM7A 4HJLA 1ZRTE 4P1CH 2NVGA 2QJKC 4NBDD 2ZT9D 3VCPA 1WW9A 5KKZC 1L0LE 3GTEA 2YFIA 2YIUC 3GCFA 1O7NA 2A06E 2B1XA 4P1BH 4NBCA 2E76D 1EZVE 2NUKA 1UUWA 4NB9A 4NBFA 4QDDA 3CXHE 3VMIA 4HM5A 4HM8A 3H1JE 2FYNC 2HMOA 4EMJB 2XR8A 4NBCD 2NVFA 2BMQA 4NBFD 4HKVA 3CWBE 4QDFB 5KLIC 3VMID 1SQQE 1L0NE 1UUVA 2XSOA 2BMOA 4AAYB 1Z03A 2YFJA 1SQPE 2CKFA
chains in the Genus database with same CATH superfamily
2E75D 1ULJA 2NVEA 1NTZE 1PPJE 4HM3A 3H1KE 4HM6A 1SJGA 1O7GA 4NBAA 4NB8D 2I7FA 2QPZA 4PD4E 1O7HA 3VMHD 2HMLA 2DE6A 2JZAA 3EN1A 3BCCE 5BOKA 3GCEA 2BMRA 2DE7D 4NBAD 1SQXE 4HM0A 4OGQD 3L73E 2DE6D 3DQYA 3H1HE 5AEUA 1Z01A 1FQTA 1NDOA 2XRXA 1NU1E 1PP9E 3GL0A 4NB9D 3VMHA 1ULIA 2HMJA 4QUQA 1G8JB 2HMKA 4QDFA 2QJPC 3L71E 5AEWA 3VMGA 2XSHA 1O7WA 3H1LE 3D89A 1BCCE 3L72E 3GKEA 1SQBE 4H13D 1G8KB 1WQLA 2E74D 2D2CD 3L75E 2IBZE 3GOBA 3CX5E 4PV1D 5KLVE 2HMNA 3EQQA 1RIEA 3GB4A 3TGUE 1EG9A 4NBHA 4U3FE 4NBBA 2E4PA 2E4QA 1VCKA 3C0DA 3L70E 4QUPA 4QURA 4AIVA 1NTKE 4NBHD 1NTME 1Q90C 2YFLA 4QCKA 4NBBD 2QJYC 1NYKA 1O7MA 1VM9A 5HL4A 2B24A 1P84E 2DE5A 1RFSA 4H44D 1Z02A 3VMGD 1KYOE 3GZYA 2FYUE 2YVJB 2ZYLA 3GKQA 3GL2A 2NUMA 2GBWA 2DE5D 2Q3WA 1SQVE 2GBXA 4NBGA 3L74E 2JO6A 4NBEA 2HMMA 1VF5D 4QDCA 2NWFA 4HM4A 3GTSA 3FOUA 3VCAA 4NBGD 2BCCE 3GZXA 4NB8A 3H1IE 4NBED 1BE3E 3N0QA 4NBDA 1JM1A 4HM1A 1O7PA 3AZCA 4HM2A 4H0LD 5CXMA 1KB9E 2DE7A 4HM7A 4HJLA 1ZRTE 4P1CH 2NVGA 2QJKC 4NBDD 2ZT9D 3VCPA 1WW9A 5KKZC 1L0LE 3GTEA 2YFIA 2YIUC 3GCFA 1O7NA 2A06E 2B1XA 4P1BH 4NBCA 2E76D 1EZVE 2NUKA 1UUWA 4NB9A 4NBFA 4QDDA 3CXHE 3VMIA 4HM5A 4HM8A 3H1JE 2FYNC 2HMOA 4EMJB 2XR8A 4NBCD 2NVFA 2BMQA 4NBFD 4HKVA 3CWBE 4QDFB 5KLIC 3VMID 1SQQE 1L0NE 1UUVA 2XSOA 2BMOA 4AAYB 1Z03A 2YFJA 1SQPE 2CKFA
chains in the Genus database with same CATH topology
2E75D 1ULJA 2NVEA 1NTZE 1PPJE 4HM3A 3H1KE 4HM6A 1SJGA 1O7GA 4NBAA 4NB8D 2I7FA 2QPZA 4PD4E 1O7HA 3VMHD 2HMLA 2DE6A 2JZAA 3EN1A 3BCCE 5BOKA 3GCEA 2BMRA 2DE7D 4NBAD 1SQXE 4HM0A 4OGQD 3L73E 2DE6D 3DQYA 3H1HE 5AEUA 1Z01A 1FQTA 1NDOA 2XRXA 1NU1E 1PP9E 3GL0A 4NB9D 3VMHA 1ULIA 2HMJA 4QUQA 1G8JB 2HMKA 4QDFA 2QJPC 3L71E 5AEWA 3VMGA 2XSHA 1O7WA 3H1LE 3D89A 1BCCE 3L72E 3GKEA 1SQBE 4H13D 1G8KB 1WQLA 2E74D 2D2CD 3L75E 2IBZE 3GOBA 3CX5E 4PV1D 5KLVE 2HMNA 3EQQA 1RIEA 3GB4A 3TGUE 1EG9A 4NBHA 4U3FE 4NBBA 2E4PA 2E4QA 1VCKA 3C0DA 3L70E 4QUPA 4QURA 4AIVA 1NTKE 4NBHD 1NTME 1Q90C 2YFLA 4QCKA 4NBBD 2QJYC 1NYKA 1O7MA 1VM9A 5HL4A 2B24A 1P84E 2DE5A 1RFSA 4H44D 1Z02A 3VMGD 1KYOE 3GZYA 2FYUE 2YVJB 2ZYLA 3GKQA 3GL2A 2NUMA 2GBWA 2DE5D 2Q3WA 1SQVE 2GBXA 4NBGA 3L74E 2JO6A 4NBEA 2HMMA 1VF5D 4QDCA 2NWFA 4HM4A 3GTSA 3FOUA 3VCAA 4NBGD 2BCCE 3GZXA 4NB8A 3H1IE 4NBED 1BE3E 3N0QA 4NBDA 1JM1A 4HM1A 1O7PA 3AZCA 4HM2A 4H0LD 5CXMA 1KB9E 2DE7A 4HM7A 4HJLA 1ZRTE 4P1CH 2NVGA 2QJKC 4NBDD 2ZT9D 3VCPA 1WW9A 5KKZC 1L0LE 3GTEA 2YFIA 2YIUC 3GCFA 1O7NA 2A06E 2B1XA 4P1BH 4NBCA 2E76D 1EZVE 2NUKA 1UUWA 4NB9A 4NBFA 4QDDA 3CXHE 3VMIA 4HM5A 4HM8A 3H1JE 2FYNC 2HMOA 4EMJB 2XR8A 4NBCD 2NVFA 2BMQA 4NBFD 4HKVA 3CWBE 4QDFB 5KLIC 3VMID 1SQQE 1L0NE 1UUVA 2XSOA 2BMOA 4AAYB 1Z03A 2YFJA 1SQPE 2CKFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E75 D;  1ULJ A;  2NVE A;  1NTZ E;  1PPJ E;  4HM3 A;  3H1K E;  4HM6 A;  1SJG A;  1O7G A;  4NBA A;  4NB8 D;  2I7F A;  2QPZ A;  4PD4 E;  1O7H A;  3VMH D;  2HML A;  2DE6 A;  2JZA A;  3EN1 A;  3BCC E;  5BOK A;  3GCE A;  2BMR A;  2DE7 D;  4NBA D;  1SQX E;  4HM0 A;  4OGQ D;  3L73 E;  2DE6 D;  3DQY A;  3H1H E;  5AEU A;  1Z01 A;  1FQT A;  1NDO A;  2XRX A;  1NU1 E;  1PP9 E;  3GL0 A;  4NB9 D;  3VMH A;  1ULI A;  2HMJ A;  4QUQ A;  1G8J B;  2HMK A;  4QDF A;  2QJP C;  3L71 E;  5AEW A;  3VMG A;  2XSH A;  1O7W A;  3H1L E;  3D89 A;  1BCC E;  3L72 E;  3GKE A;  1SQB E;  4H13 D;  1G8K B;  1WQL A;  2E74 D;  2D2C D;  3L75 E;  2IBZ E;  3GOB A;  3CX5 E;  4PV1 D;  5KLV E;  2HMN A;  3EQQ A;  1RIE A;  3GB4 A;  3TGU E;  1EG9 A;  4NBH A;  4U3F E;  4NBB A;  2E4P A;  2E4Q A;  1VCK A;  3C0D A;  3L70 E;  4QUP A;  4QUR A;  4AIV A;  1NTK E;  4NBH D;  1NTM E;  1Q90 C;  2YFL A;  4QCK A;  4NBB D;  2QJY C;  1NYK A;  1O7M A;  1VM9 A;  5HL4 A;  2B24 A;  1P84 E;  2DE5 A;  1RFS A;  4H44 D;  1Z02 A;  3VMG D;  1KYO E;  3GZY A;  2FYU E;  2YVJ B;  2ZYL A;  3GKQ A;  3GL2 A;  2NUM A;  2GBW A;  2DE5 D;  2Q3W A;  1SQV E;  2GBX A;  4NBG A;  3L74 E;  2JO6 A;  4NBE A;  2HMM A;  1VF5 D;  4QDC A;  2NWF A;  4HM4 A;  3GTS A;  3FOU A;  3VCA A;  4NBG D;  2BCC E;  3GZX A;  4NB8 A;  3H1I E;  4NBE D;  1BE3 E;  3N0Q A;  4NBD A;  1JM1 A;  4HM1 A;  1O7P A;  3AZC A;  4HM2 A;  4H0L D;  5CXM A;  1KB9 E;  2DE7 A;  4HM7 A;  4HJL A;  1ZRT E;  4P1C H;  2NVG A;  2QJK C;  4NBD D;  2ZT9 D;  3VCP A;  1WW9 A;  5KKZ C;  1L0L E;  3GTE A;  2YFI A;  2YIU C;  3GCF A;  1O7N A;  2A06 E;  2B1X A;  4P1B H;  4NBC A;  2E76 D;  1EZV E;  2NUK A;  1UUW A;  4NB9 A;  4NBF A;  4QDD A;  3CXH E;  3VMI A;  4HM5 A;  4HM8 A;  3H1J E;  2FYN C;  2HMO A;  4EMJ B;  2XR8 A;  4NBC D;  2NVF A;  2BMQ A;  4NBF D;  4HKV A;  3CWB E;  4QDF B;  5KLI C;  3VMI D;  1SQQ E;  1L0N E;  1UUV A;  2XSO A;  2BMO A;  4AAY B;  1Z03 A;  2YFJ A;  1SQP E;  2CKF A; 
#chains in the Genus database with same CATH topology
 2E75 D;  1ULJ A;  2NVE A;  1NTZ E;  1PPJ E;  4HM3 A;  3H1K E;  4HM6 A;  1SJG A;  1O7G A;  4NBA A;  4NB8 D;  2I7F A;  2QPZ A;  4PD4 E;  1O7H A;  3VMH D;  2HML A;  2DE6 A;  2JZA A;  3EN1 A;  3BCC E;  5BOK A;  3GCE A;  2BMR A;  2DE7 D;  4NBA D;  1SQX E;  4HM0 A;  4OGQ D;  3L73 E;  2DE6 D;  3DQY A;  3H1H E;  5AEU A;  1Z01 A;  1FQT A;  1NDO A;  2XRX A;  1NU1 E;  1PP9 E;  3GL0 A;  4NB9 D;  3VMH A;  1ULI A;  2HMJ A;  4QUQ A;  1G8J B;  2HMK A;  4QDF A;  2QJP C;  3L71 E;  5AEW A;  3VMG A;  2XSH A;  1O7W A;  3H1L E;  3D89 A;  1BCC E;  3L72 E;  3GKE A;  1SQB E;  4H13 D;  1G8K B;  1WQL A;  2E74 D;  2D2C D;  3L75 E;  2IBZ E;  3GOB A;  3CX5 E;  4PV1 D;  5KLV E;  2HMN A;  3EQQ A;  1RIE A;  3GB4 A;  3TGU E;  1EG9 A;  4NBH A;  4U3F E;  4NBB A;  2E4P A;  2E4Q A;  1VCK A;  3C0D A;  3L70 E;  4QUP A;  4QUR A;  4AIV A;  1NTK E;  4NBH D;  1NTM E;  1Q90 C;  2YFL A;  4QCK A;  4NBB D;  2QJY C;  1NYK A;  1O7M A;  1VM9 A;  5HL4 A;  2B24 A;  1P84 E;  2DE5 A;  1RFS A;  4H44 D;  1Z02 A;  3VMG D;  1KYO E;  3GZY A;  2FYU E;  2YVJ B;  2ZYL A;  3GKQ A;  3GL2 A;  2NUM A;  2GBW A;  2DE5 D;  2Q3W A;  1SQV E;  2GBX A;  4NBG A;  3L74 E;  2JO6 A;  4NBE A;  2HMM A;  1VF5 D;  4QDC A;  2NWF A;  4HM4 A;  3GTS A;  3FOU A;  3VCA A;  4NBG D;  2BCC E;  3GZX A;  4NB8 A;  3H1I E;  4NBE D;  1BE3 E;  3N0Q A;  4NBD A;  1JM1 A;  4HM1 A;  1O7P A;  3AZC A;  4HM2 A;  4H0L D;  5CXM A;  1KB9 E;  2DE7 A;  4HM7 A;  4HJL A;  1ZRT E;  4P1C H;  2NVG A;  2QJK C;  4NBD D;  2ZT9 D;  3VCP A;  1WW9 A;  5KKZ C;  1L0L E;  3GTE A;  2YFI A;  2YIU C;  3GCF A;  1O7N A;  2A06 E;  2B1X A;  4P1B H;  4NBC A;  2E76 D;  1EZV E;  2NUK A;  1UUW A;  4NB9 A;  4NBF A;  4QDD A;  3CXH E;  3VMI A;  4HM5 A;  4HM8 A;  3H1J E;  2FYN C;  2HMO A;  4EMJ B;  2XR8 A;  4NBC D;  2NVF A;  2BMQ A;  4NBF D;  4HKV A;  3CWB E;  4QDF B;  5KLI C;  3VMI D;  1SQQ E;  1L0N E;  1UUV A;  2XSO A;  2BMO A;  4AAY B;  1Z03 A;  2YFJ A;  1SQP E;  2CKF A; 
#chains in the Genus database with same CATH homology
 2E75 D;  1ULJ A;  2NVE A;  1NTZ E;  1PPJ E;  4HM3 A;  3H1K E;  4HM6 A;  1SJG A;  1O7G A;  4NBA A;  4NB8 D;  2I7F A;  2QPZ A;  4PD4 E;  1O7H A;  3VMH D;  2HML A;  2DE6 A;  2JZA A;  3EN1 A;  3BCC E;  5BOK A;  3GCE A;  2BMR A;  2DE7 D;  4NBA D;  1SQX E;  4HM0 A;  4OGQ D;  3L73 E;  2DE6 D;  3DQY A;  3H1H E;  5AEU A;  1Z01 A;  1FQT A;  1NDO A;  2XRX A;  1NU1 E;  1PP9 E;  3GL0 A;  4NB9 D;  3VMH A;  1ULI A;  2HMJ A;  4QUQ A;  1G8J B;  2HMK A;  4QDF A;  2QJP C;  3L71 E;  5AEW A;  3VMG A;  2XSH A;  1O7W A;  3H1L E;  3D89 A;  1BCC E;  3L72 E;  3GKE A;  1SQB E;  4H13 D;  1G8K B;  1WQL A;  2E74 D;  2D2C D;  3L75 E;  2IBZ E;  3GOB A;  3CX5 E;  4PV1 D;  5KLV E;  2HMN A;  3EQQ A;  1RIE A;  3GB4 A;  3TGU E;  1EG9 A;  4NBH A;  4U3F E;  4NBB A;  2E4P A;  2E4Q A;  1VCK A;  3C0D A;  3L70 E;  4QUP A;  4QUR A;  4AIV A;  1NTK E;  4NBH D;  1NTM E;  1Q90 C;  2YFL A;  4QCK A;  4NBB D;  2QJY C;  1NYK A;  1O7M A;  1VM9 A;  5HL4 A;  2B24 A;  1P84 E;  2DE5 A;  1RFS A;  4H44 D;  1Z02 A;  3VMG D;  1KYO E;  3GZY A;  2FYU E;  2YVJ B;  2ZYL A;  3GKQ A;  3GL2 A;  2NUM A;  2GBW A;  2DE5 D;  2Q3W A;  1SQV E;  2GBX A;  4NBG A;  3L74 E;  2JO6 A;  4NBE A;  2HMM A;  1VF5 D;  4QDC A;  2NWF A;  4HM4 A;  3GTS A;  3FOU A;  3VCA A;  4NBG D;  2BCC E;  3GZX A;  4NB8 A;  3H1I E;  4NBE D;  1BE3 E;  3N0Q A;  4NBD A;  1JM1 A;  4HM1 A;  1O7P A;  3AZC A;  4HM2 A;  4H0L D;  5CXM A;  1KB9 E;  2DE7 A;  4HM7 A;  4HJL A;  1ZRT E;  4P1C H;  2NVG A;  2QJK C;  4NBD D;  2ZT9 D;  3VCP A;  1WW9 A;  5KKZ C;  1L0L E;  3GTE A;  2YFI A;  2YIU C;  3GCF A;  1O7N A;  2A06 E;  2B1X A;  4P1B H;  4NBC A;  2E76 D;  1EZV E;  2NUK A;  1UUW A;  4NB9 A;  4NBF A;  4QDD A;  3CXH E;  3VMI A;  4HM5 A;  4HM8 A;  3H1J E;  2FYN C;  2HMO A;  4EMJ B;  2XR8 A;  4NBC D;  2NVF A;  2BMQ A;  4NBF D;  4HKV A;  3CWB E;  4QDF B;  5KLI C;  3VMI D;  1SQQ E;  1L0N E;  1UUV A;  2XSO A;  2BMO A;  4AAY B;  1Z03 A;  2YFJ A;  1SQP E;  2CKF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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