3H0MA

Structure of trna-dependent amidotransferase gatcab from aquifex aeolicus
Total Genus 183
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
183
sequence length
478
structure length
478
Chain Sequence
MLWKKSLSELRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESLKERELPLFGIPIAVKDNILVEGEKTTCASKILENFVAPYDATVIERLKKAGALIVGKTNLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLSAPVSLGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLEVISGWDEKDSTSAKVPVPEWSEEVKKEVKGLKIGLPKEFFEYELQPQVKEAFENFIKELEKEGFEIKEVSLPHVKYSIPTYYIIAPSEASSNLARYDGVRYGYRAKEYKDIFEMYARTRDEGFGPEVKRRIMLGTFALSAGYYDAYYLKAQKVRRLITNDFLKAFEEVDVIASPTTPTLPFKFGERLENPIEMYLSDILTVPANLAGLPAISIPIAWKDGLPVGGQLIGKHWDETTLLQISYLWEQKFKHYEKIPLT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Ligase
molecule keywords Glutamyl-tRNA(Gln) amidotransferase subunit A
publication title Insights into tRNA-Dependent Amidotransferase Evolution and Catalysis from the Structure of the Aquifex aeolicus Enzyme
pubmed doi rcsb
source organism Aquifex aeolicus
total genus 183
structure length 478
sequence length 478
chains with identical sequence D, G, J, M, P, S, V
ec nomenclature ec 6.3.5.7: Glutaminyl-tRNA synthase (glutamine-hydrolyzing).
pdb deposition date 2009-04-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01425 Amidase Amidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1300.10 Alpha Beta Alpha-Beta Complex Amidase signature (AS) enzymes Amidase signature (AS) domain 3h0mA00
3OJ8A 1OCKA 3K7FA 3LJ6A 3H0RA 4GYRA 3H0MA 1OCLA 4DO3A 4CP8A 1O9OA 3A1KA 1M21A 2DQNA 1O9QA 2DC0A 1OBLA 3K84A 4J5PA 3PR0A 4WJ3A 3QK5A 2G5IA 1OCHA 3PPMA 2DF4A 4YJ6A 4ISSA 1O9PA 3LJ7A 1M22A 2GI3A 2WAPA 3IP4A 3H0LA 2VYAA 3K83A 4YJIA 3A1IA 4N0IA 5EWQA 2WJ1A 1OBKA 1MT5A 1OCMA 4N0HA 2G5HA 2WJ2A 3KFUE 2F2AA 3A2PA 3QJ8A 1OBJA 4ISTA 5AC3A 3QJ9A 3AL0A 4GYSA 1OBIA 1O9NA 4HBPA 3A2QA 3QKVA
chains in the Genus database with same CATH superfamily
3OJ8A 1OCKA 3K7FA 3LJ6A 3H0RA 4GYRA 3H0MA 1OCLA 4DO3A 4CP8A 1O9OA 3A1KA 1M21A 2DQNA 1O9QA 2DC0A 1OBLA 3K84A 4J5PA 3PR0A 4WJ3A 3QK5A 2G5IA 1OCHA 3PPMA 2DF4A 4YJ6A 4ISSA 1O9PA 3LJ7A 1M22A 2GI3A 2WAPA 3IP4A 3H0LA 2VYAA 3K83A 4YJIA 3A1IA 4N0IA 5EWQA 2WJ1A 1OBKA 1MT5A 1OCMA 4N0HA 2G5HA 2WJ2A 3KFUE 2F2AA 3A2PA 3QJ8A 1OBJA 4ISTA 5AC3A 3QJ9A 3AL0A 4GYSA 1OBIA 1O9NA 4HBPA 3A2QA 3QKVA
chains in the Genus database with same CATH topology
3OJ8A 1OCKA 3K7FA 3LJ6A 3H0RA 4GYRA 3H0MA 1OCLA 4DO3A 4CP8A 1O9OA 3A1KA 1M21A 2DQNA 1O9QA 2DC0A 1OBLA 3K84A 4J5PA 3PR0A 4WJ3A 3QK5A 2G5IA 1OCHA 3PPMA 2DF4A 4YJ6A 4ISSA 1O9PA 3LJ7A 1M22A 2GI3A 2WAPA 3IP4A 3H0LA 2VYAA 3K83A 4YJIA 3A1IA 4N0IA 5EWQA 2WJ1A 1OBKA 1MT5A 1OCMA 4N0HA 2G5HA 2WJ2A 3KFUE 2F2AA 3A2PA 3QJ8A 1OBJA 4ISTA 5AC3A 3QJ9A 3AL0A 4GYSA 1OBIA 1O9NA 4HBPA 3A2QA 3QKVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3OJ8 A;  1OCK A;  3K7F A;  3LJ6 A;  3H0R A;  4GYR A;  3H0M A;  1OCL A;  4DO3 A;  4CP8 A;  1O9O A;  3A1K A;  1M21 A;  2DQN A;  1O9Q A;  2DC0 A;  1OBL A;  3K84 A;  4J5P A;  3PR0 A;  4WJ3 A;  3QK5 A;  2G5I A;  1OCH A;  3PPM A;  2DF4 A;  4YJ6 A;  4ISS A;  1O9P A;  3LJ7 A;  1M22 A;  2GI3 A;  2WAP A;  3IP4 A;  3H0L A;  2VYA A;  3K83 A;  4YJI A;  3A1I A;  4N0I A;  5EWQ A;  2WJ1 A;  1OBK A;  1MT5 A;  1OCM A;  4N0H A;  2G5H A;  2WJ2 A;  3KFU E;  2F2A A;  3A2P A;  3QJ8 A;  1OBJ A;  4IST A;  5AC3 A;  3QJ9 A;  3AL0 A;  4GYS A;  1OBI A;  1O9N A;  4HBP A;  3A2Q A;  3QKV A; 
#chains in the Genus database with same CATH topology
 3OJ8 A;  1OCK A;  3K7F A;  3LJ6 A;  3H0R A;  4GYR A;  3H0M A;  1OCL A;  4DO3 A;  4CP8 A;  1O9O A;  3A1K A;  1M21 A;  2DQN A;  1O9Q A;  2DC0 A;  1OBL A;  3K84 A;  4J5P A;  3PR0 A;  4WJ3 A;  3QK5 A;  2G5I A;  1OCH A;  3PPM A;  2DF4 A;  4YJ6 A;  4ISS A;  1O9P A;  3LJ7 A;  1M22 A;  2GI3 A;  2WAP A;  3IP4 A;  3H0L A;  2VYA A;  3K83 A;  4YJI A;  3A1I A;  4N0I A;  5EWQ A;  2WJ1 A;  1OBK A;  1MT5 A;  1OCM A;  4N0H A;  2G5H A;  2WJ2 A;  3KFU E;  2F2A A;  3A2P A;  3QJ8 A;  1OBJ A;  4IST A;  5AC3 A;  3QJ9 A;  3AL0 A;  4GYS A;  1OBI A;  1O9N A;  4HBP A;  3A2Q A;  3QKV A; 
#chains in the Genus database with same CATH homology
 3OJ8 A;  1OCK A;  3K7F A;  3LJ6 A;  3H0R A;  4GYR A;  3H0M A;  1OCL A;  4DO3 A;  4CP8 A;  1O9O A;  3A1K A;  1M21 A;  2DQN A;  1O9Q A;  2DC0 A;  1OBL A;  3K84 A;  4J5P A;  3PR0 A;  4WJ3 A;  3QK5 A;  2G5I A;  1OCH A;  3PPM A;  2DF4 A;  4YJ6 A;  4ISS A;  1O9P A;  3LJ7 A;  1M22 A;  2GI3 A;  2WAP A;  3IP4 A;  3H0L A;  2VYA A;  3K83 A;  4YJI A;  3A1I A;  4N0I A;  5EWQ A;  2WJ1 A;  1OBK A;  1MT5 A;  1OCM A;  4N0H A;  2G5H A;  2WJ2 A;  3KFU E;  2F2A A;  3A2P A;  3QJ8 A;  1OBJ A;  4IST A;  5AC3 A;  3QJ9 A;  3AL0 A;  4GYS A;  1OBI A;  1O9N A;  4HBP A;  3A2Q A;  3QKV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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