3H0XA

Crystal structure of peptide-binding domain of kar2 protein from saccharomyces cerevisiae
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
150
structure length
150
Chain Sequence
ADVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNNLLGKFELTGIPPAPRGVPQIEVTFALDANGILKVSATDKGTGKSESITITNDKGRLTQEEIDRMVEEAEKFASEDASIKAKVESRNKLE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Chaperone
molecule keywords 78 kDa glucose-regulated protein homolog
publication title X-ray crystal structure of peptide-binding domain of Kar2 protein from Saccharomyces cerevisiae.
rcsb
source organism Saccharomyces cerevisiae
total genus 41
structure length 150
sequence length 150
ec nomenclature ec 3.6.4.10: Non-chaperonin molecular chaperone ATPase.
pdb deposition date 2009-04-10
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.34.10 Mainly Beta Sandwich Substrate Binding Domain Of DNAk; Chain A, domain 1 Substrate Binding Domain Of DNAk; Chain A, domain 1 3h0xA00
3DPOA 4R5LA 4EZNA 3D2FA 4EZRA 7HSCA 4PO2A 4JNEA 3D2EA 5TKYA 4EZOA 4JWCA 4JWDA 4EZWA 4HYBA 2V7YA 3H0XA 4EZUA 4E81A 5E84A 3DOBA 1DKZA 4R5IA 4WV5A 4JWEA 4R5JA 4EZVA 2QXLA 4B9QA 4EZTA 3DQGA 4EZZA 4EZSA 4JNFA 1YUWA 4R5KA 4F01A 1Q5LA 3C7NA 4EZXA 3N8EA 2OP6A 1U00A 2KHOA 4WV7A 4EZQA 3DPPA 4EZPA 1BPRA 2BPRA 4EZYA 4HY9A 4F00A 3QNJA 4R5GA 1CKRA 4FL9A 4JN4A 1DG4A 3C7NB 3DPQA 1DKXA 1DKYA 4JWIA
chains in the Genus database with same CATH superfamily
3DPOA 4R5LA 4EZNA 3D2FA 3SBTB 4EZRA 7HSCA 4ILGA 4MQDA 4PO2A 4JNEA 3D2EA 5TKYA 3SBSA 4EZOA 4JWCA 4ILHB 4JWDA 4EZWA 4HYBA 2V7YA 3H0XA 4EZUA 4E81A 5E84A 3DOBA 1DKZA 4R5IA 4WV5A 4JWEA 4R5JA 4EZVA 2QXLA 4B9QA 4EZTA 3DQGA 4EZZA 4EZSA 4JNFA 1YUWA 4R5KA 3ZEFA 4F01A 1Q5LA 3C7NA 4EZXA 3N8EA 2OP6A 1U00A 2KHOA 4I43A 4WV7A 4EZQA 3DPPA 4EZPA 1BPRA 2BPRA 4EZYA 4HY9A 4F00A 3QNJA 4R5GA 1CKRA 4FL9A 4JN4A 1DG4A 3C7NB 3DPQA 1DKXA 1DKYA 4ILIA 4JWIA
chains in the Genus database with same CATH topology
3DPOA 4R5LA 4EZNA 3D2FA 3SBTB 4EZRA 7HSCA 4ILGA 4MQDA 4PO2A 4JNEA 3D2EA 5TKYA 3SBSA 4EZOA 4JWCA 4ILHB 4JWDA 4EZWA 4HYBA 2V7YA 3H0XA 4EZUA 4E81A 5E84A 3DOBA 1DKZA 4R5IA 4WV5A 4JWEA 4R5JA 4EZVA 2QXLA 4B9QA 4EZTA 3DQGA 4EZZA 4EZSA 4JNFA 1YUWA 4R5KA 3ZEFA 4F01A 1Q5LA 3C7NA 4EZXA 3N8EA 2OP6A 1U00A 2KHOA 4I43A 4WV7A 4EZQA 3DPPA 4EZPA 1BPRA 2BPRA 4EZYA 4HY9A 4F00A 3QNJA 4R5GA 1CKRA 4FL9A 4JN4A 1DG4A 3C7NB 3DPQA 1DKXA 1DKYA 4ILIA 4JWIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DPO A;  4R5L A;  4EZN A;  3D2F A;  4EZR A;  7HSC A;  4PO2 A;  4JNE A;  3D2E A;  5TKY A;  4EZO A;  4JWC A;  4JWD A;  4EZW A;  4HYB A;  2V7Y A;  3H0X A;  4EZU A;  4E81 A;  5E84 A;  3DOB A;  1DKZ A;  4R5I A;  4WV5 A;  4JWE A;  4R5J A;  4EZV A;  2QXL A;  4B9Q A;  4EZT A;  3DQG A;  4EZZ A;  4EZS A;  4JNF A;  1YUW A;  4R5K A;  4F01 A;  1Q5L A;  3C7N A;  4EZX A;  3N8E A;  2OP6 A;  1U00 A;  2KHO A;  4WV7 A;  4EZQ A;  3DPP A;  4EZP A;  1BPR A;  2BPR A;  4EZY A;  4HY9 A;  4F00 A;  3QNJ A;  4R5G A;  1CKR A;  4FL9 A;  4JN4 A;  1DG4 A;  3C7N B;  3DPQ A;  1DKX A;  1DKY A;  4JWI A; 
#chains in the Genus database with same CATH topology
 3DPO A;  4R5L A;  4EZN A;  3D2F A;  3SBT B;  4EZR A;  7HSC A;  4ILG A;  4MQD A;  4PO2 A;  4JNE A;  3D2E A;  5TKY A;  3SBS A;  4EZO A;  4JWC A;  4ILH B;  4JWD A;  4EZW A;  4HYB A;  2V7Y A;  3H0X A;  4EZU A;  4E81 A;  5E84 A;  3DOB A;  1DKZ A;  4R5I A;  4WV5 A;  4JWE A;  4R5J A;  4EZV A;  2QXL A;  4B9Q A;  4EZT A;  3DQG A;  4EZZ A;  4EZS A;  4JNF A;  1YUW A;  4R5K A;  3ZEF A;  4F01 A;  1Q5L A;  3C7N A;  4EZX A;  3N8E A;  2OP6 A;  1U00 A;  2KHO A;  4I43 A;  4WV7 A;  4EZQ A;  3DPP A;  4EZP A;  1BPR A;  2BPR A;  4EZY A;  4HY9 A;  4F00 A;  3QNJ A;  4R5G A;  1CKR A;  4FL9 A;  4JN4 A;  1DG4 A;  3C7N B;  3DPQ A;  1DKX A;  1DKY A;  4ILI A;  4JWI A; 
#chains in the Genus database with same CATH homology
 3DPO A;  4R5L A;  4EZN A;  3D2F A;  3SBT B;  4EZR A;  7HSC A;  4ILG A;  4MQD A;  4PO2 A;  4JNE A;  3D2E A;  5TKY A;  3SBS A;  4EZO A;  4JWC A;  4ILH B;  4JWD A;  4EZW A;  4HYB A;  2V7Y A;  3H0X A;  4EZU A;  4E81 A;  5E84 A;  3DOB A;  1DKZ A;  4R5I A;  4WV5 A;  4JWE A;  4R5J A;  4EZV A;  2QXL A;  4B9Q A;  4EZT A;  3DQG A;  4EZZ A;  4EZS A;  4JNF A;  1YUW A;  4R5K A;  3ZEF A;  4F01 A;  1Q5L A;  3C7N A;  4EZX A;  3N8E A;  2OP6 A;  1U00 A;  2KHO A;  4I43 A;  4WV7 A;  4EZQ A;  3DPP A;  4EZP A;  1BPR A;  2BPR A;  4EZY A;  4HY9 A;  4F00 A;  3QNJ A;  4R5G A;  1CKR A;  4FL9 A;  4JN4 A;  1DG4 A;  3C7N B;  3DPQ A;  1DKX A;  1DKY A;  4ILI A;  4JWI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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