3H33A

Ppcc, a cytochrome c7 from geobacter sulfurreducens
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
72
structure length
72
Chain Sequence
IDKITYPTRIGAVVFPHKKHQDALGECRGCHEKGPGRIDGFDKVMAHGKGCKGCHEEMKIGPVRCGDCHKGG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
molecule keywords Cytochrome c7
publication title Structural characterization of a family of cytochromes c(7) involved in Fe(III) respiration by Geobacter sulfurreducens.
pubmed doi rcsb
source organism Geobacter sulfurreducens
total genus 12
structure length 72
sequence length 72
ec nomenclature
pdb deposition date 2009-04-15
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.10.10 Alpha Beta Alpha-Beta Complex Cytochrome C3 Cytochrome C3 3h33A00
1HH5A 4HB6A 1F22A 2LDOA 3SJ4X 3OUQA 2EWUA 1UPDA 1RWJA 1A2IA 1DUWA 1IT1A 1UP9A 2EWKA 1OFWA 2EWIA 1W7OA 2KSUA 3H4NA 2BPNA 3H34A 4HBFA 1MDVA 1OS6A 1AQEA 2FFNA 1I77A 1NEWA 1GMBA 1J0PA 2CTHA 2Z47A 3OUEA 1OFYA 2CVCA 4HDLA 1QN0A 1H29A 2YXCA 1QN1A 2A3PA 2A3MA 2E84A 4HB8A 2CYMA 3BXUA 3OV0A 1L3OA 3SJ0X 4HAJA 1Z1NX 4HC3A 1GWSA 2LZZA 1CZJA 2KMYA 3CYRA 2CY3A 1GM4A 3SELX 2N91A 2BQ4A 1LM2A 1GYOA 3SJ1X 1WADA 1WR5A 2YYXA 3H33A 19HCA 2CDVA 3CAOA 2YYWA 1EHJA 3CARA 1KWJA 1J0OA 2MZ9A
chains in the Genus database with same CATH superfamily
1HH5A 4HB6A 1F22A 2LDOA 3SJ4X 3OUQA 2EWUA 1UPDA 1RWJA 1A2IA 1DUWA 1IT1A 1UP9A 2EWKA 1OFWA 2EWIA 1W7OA 2KSUA 3H4NA 2BPNA 3H34A 4HBFA 1MDVA 1OS6A 1AQEA 2FFNA 1I77A 1NEWA 1GMBA 1J0PA 2CTHA 2Z47A 3OUEA 1OFYA 2CVCA 4HDLA 1QN0A 1H29A 2YXCA 1QN1A 2A3PA 2A3MA 2E84A 4HB8A 2CYMA 3BXUA 3OV0A 1L3OA 3SJ0X 4HAJA 1Z1NX 4HC3A 1GWSA 2LZZA 1CZJA 2KMYA 3CYRA 2CY3A 1GM4A 3SELX 2N91A 2BQ4A 1LM2A 1GYOA 3SJ1X 1WADA 1WR5A 2YYXA 3H33A 19HCA 2CDVA 3CAOA 2YYWA 1EHJA 3CARA 1KWJA 1J0OA 2MZ9A
chains in the Genus database with same CATH topology
1HH5A 4HB6A 1F22A 2LDOA 3SJ4X 3OUQA 2EWUA 1UPDA 1RWJA 1A2IA 1DUWA 1IT1A 1UP9A 2EWKA 1OFWA 2EWIA 1W7OA 2KSUA 3H4NA 2BPNA 3H34A 4HBFA 1MDVA 1OS6A 1AQEA 2FFNA 1I77A 1NEWA 1GMBA 1J0PA 2CTHA 2Z47A 3OUEA 1OFYA 2CVCA 4HDLA 1QN0A 1H29A 2YXCA 1QN1A 2A3PA 2A3MA 2E84A 4HB8A 2CYMA 3BXUA 3OV0A 1L3OA 3SJ0X 4HAJA 1Z1NX 4HC3A 1GWSA 2LZZA 1CZJA 2KMYA 3CYRA 2CY3A 1GM4A 3SELX 2N91A 2BQ4A 1LM2A 1GYOA 3SJ1X 1WADA 1WR5A 2YYXA 3H33A 19HCA 2CDVA 3CAOA 2YYWA 1EHJA 3CARA 1KWJA 1J0OA 2MZ9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1HH5 A;  4HB6 A;  1F22 A;  2LDO A;  3SJ4 X;  3OUQ A;  2EWU A;  1UPD A;  1RWJ A;  1A2I A;  1DUW A;  1IT1 A;  1UP9 A;  2EWK A;  1OFW A;  2EWI A;  1W7O A;  2KSU A;  3H4N A;  2BPN A;  3H34 A;  4HBF A;  1MDV A;  1OS6 A;  1AQE A;  2FFN A;  1I77 A;  1NEW A;  1GMB A;  1J0P A;  2CTH A;  2Z47 A;  3OUE A;  1OFY A;  2CVC A;  4HDL A;  1QN0 A;  1H29 A;  2YXC A;  1QN1 A;  2A3P A;  2A3M A;  2E84 A;  4HB8 A;  2CYM A;  3BXU A;  3OV0 A;  1L3O A;  3SJ0 X;  4HAJ A;  1Z1N X;  4HC3 A;  1GWS A;  2LZZ A;  1CZJ A;  2KMY A;  3CYR A;  2CY3 A;  1GM4 A;  3SEL X;  2N91 A;  2BQ4 A;  1LM2 A;  1GYO A;  3SJ1 X;  1WAD A;  1WR5 A;  2YYX A;  3H33 A;  19HC A;  2CDV A;  3CAO A;  2YYW A;  1EHJ A;  3CAR A;  1KWJ A;  1J0O A;  2MZ9 A; 
#chains in the Genus database with same CATH topology
 1HH5 A;  4HB6 A;  1F22 A;  2LDO A;  3SJ4 X;  3OUQ A;  2EWU A;  1UPD A;  1RWJ A;  1A2I A;  1DUW A;  1IT1 A;  1UP9 A;  2EWK A;  1OFW A;  2EWI A;  1W7O A;  2KSU A;  3H4N A;  2BPN A;  3H34 A;  4HBF A;  1MDV A;  1OS6 A;  1AQE A;  2FFN A;  1I77 A;  1NEW A;  1GMB A;  1J0P A;  2CTH A;  2Z47 A;  3OUE A;  1OFY A;  2CVC A;  4HDL A;  1QN0 A;  1H29 A;  2YXC A;  1QN1 A;  2A3P A;  2A3M A;  2E84 A;  4HB8 A;  2CYM A;  3BXU A;  3OV0 A;  1L3O A;  3SJ0 X;  4HAJ A;  1Z1N X;  4HC3 A;  1GWS A;  2LZZ A;  1CZJ A;  2KMY A;  3CYR A;  2CY3 A;  1GM4 A;  3SEL X;  2N91 A;  2BQ4 A;  1LM2 A;  1GYO A;  3SJ1 X;  1WAD A;  1WR5 A;  2YYX A;  3H33 A;  19HC A;  2CDV A;  3CAO A;  2YYW A;  1EHJ A;  3CAR A;  1KWJ A;  1J0O A;  2MZ9 A; 
#chains in the Genus database with same CATH homology
 1HH5 A;  4HB6 A;  1F22 A;  2LDO A;  3SJ4 X;  3OUQ A;  2EWU A;  1UPD A;  1RWJ A;  1A2I A;  1DUW A;  1IT1 A;  1UP9 A;  2EWK A;  1OFW A;  2EWI A;  1W7O A;  2KSU A;  3H4N A;  2BPN A;  3H34 A;  4HBF A;  1MDV A;  1OS6 A;  1AQE A;  2FFN A;  1I77 A;  1NEW A;  1GMB A;  1J0P A;  2CTH A;  2Z47 A;  3OUE A;  1OFY A;  2CVC A;  4HDL A;  1QN0 A;  1H29 A;  2YXC A;  1QN1 A;  2A3P A;  2A3M A;  2E84 A;  4HB8 A;  2CYM A;  3BXU A;  3OV0 A;  1L3O A;  3SJ0 X;  4HAJ A;  1Z1N X;  4HC3 A;  1GWS A;  2LZZ A;  1CZJ A;  2KMY A;  3CYR A;  2CY3 A;  1GM4 A;  3SEL X;  2N91 A;  2BQ4 A;  1LM2 A;  1GYO A;  3SJ1 X;  1WAD A;  1WR5 A;  2YYX A;  3H33 A;  19HC A;  2CDV A;  3CAO A;  2YYW A;  1EHJ A;  3CAR A;  1KWJ A;  1J0O A;  2MZ9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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