3H87C

Rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
72
structure length
72
Chain Sequence
SDVLIRDIPDDVLASLDAIAARLGLSRTEYIRRRLAQDAQTARVTVTAADLRRLRGAVAGLGDPELMRQAWR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin/antitoxin
molecule keywords Putative uncharacterized protein
publication title The crystal structure of the Rv0301-Rv0300 VapBC-3 toxin-antitoxin complex from M. tuberculosis reveals a Mg(2+) ion in the active site and a putative RNA-binding site.
pubmed doi rcsb
source organism Mycobacterium tuberculosis
total genus 23
structure length 72
sequence length 72
chains with identical sequence D
ec nomenclature
pdb deposition date 2009-04-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF01402 RHH_1 Ribbon-helix-helix protein, copG family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1220.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant Met repressor-like 3h87C00
1NLAA 2CA9A 1X93A 2HZAA 1MYKA 1ARRA 2K29A 2WVDA 2RBFA 1BDVA 2BNZA 3OD2A 2BA3A 2WVCA 1EA4A 2CPGA 3GXQA 2JXHA 2CAXA 1BDTA 1BAZA 2JXGA 2BJ7A 2K6LA 2KELA 4FXEA 2HZVA 1U9PA 2BJ8A 3LGHA 2JXIA 1P94A 3VEBA 2BJ1A 1Q5VA 3FMTA 3FT7A 3VW4A 1PARA 3H87C 2K9IA 2BNWA 4D8JA 2CADA 3QOQA 2K5JA 2BSQE 1ARQA 3VEAA 1MNTA 1B28A 2WVFA 2AY0A 2BJ9A 4HV0A 2WVBA 2WVEA 2CAJA 2GPEA 2H1OE 4ME7E 2K1OA 1B01A 2BJ3A 1IRQA 1MYLA 1QTGA
chains in the Genus database with same CATH superfamily
3UPFA 1NLAA 1X93A 2RBFA 1SH3A 2JXHA 1QTGA 1BAZA 4FXEA 2BJ7A 4AAIA 1U9PA 2JXIA 1SIWA 3VEBA 3FMTA 2A2BA 3SFGA 2BNWA 2ADLA 2JBVA 2AN7A 2B43A 3BSNA 2BSQE 1MNTA 2WVFA 2AY0A 4ME7E 2K1OA 3H5YA 3QOQA 3NAHA 2CA9A 1MYKA 1ARRA 1OG7A 1BDVA 3OD2A 2BA3A 1EA4A 2K6LA 2KELA 4NRTA 2BJ8A 2WK4A 4LQ3A 1PARA 2KKEA 3H87C 2CKWA 2CADA 4D8JA 1B28A 2GPEA 2H1OE 1B01A 2Q2KA 1MYLA 2WVEA 4QPXA 2UUWA 2BNZA 3G5OA 2WVCA 3GXQA 4O4RA 2CAXA 1BDTA 2JXGA 3LGHA 3UR0A 1P94A 3BSOA 3NNEA 1ARQA 3VEAA 2BJ9A 4LQ9A 2WVBA 3IR7A 3NO7A 2UUTA 2KOEA 2BJ3A 1OHNA 1IRQA 2HZAA 2K29A 2WVDA 3H5XA 2HZVA 1Q16A 2BJ1A 1Q5VA 3UQSA 3FT7A 3VW4A 4LRVA 2K9IA 4MJWA 3SFUA 1SH2A 2H3AA 2K5JA 4NRUA 3QIDA 4HV0A 1SH0A 2CAJA 3NAIA 2CPGA 3LJPA
chains in the Genus database with same CATH topology
1NLAA 2CA9A 1X93A 2HZAA 1MYKA 1ARRA 2K29A 2WVDA 2RBFA 1BDVA 2BNZA 3OD2A 2BA3A 2WVCA 1EA4A 2CPGA 3GXQA 2JXHA 2CAXA 1BDTA 1BAZA 2JXGA 2BJ7A 2K6LA 2KELA 4FXEA 2HZVA 1U9PA 2BJ8A 3LGHA 2JXIA 1P94A 3VEBA 2BJ1A 1Q5VA 3FMTA 3FT7A 3VW4A 1PARA 3H87C 2K9IA 2BNWA 4D8JA 2CADA 3QOQA 2K5JA 2BSQE 1ARQA 3VEAA 1MNTA 1B28A 2WVFA 2AY0A 2BJ9A 4HV0A 2WVBA 2WVEA 2CAJA 2GPEA 2H1OE 4ME7E 2K1OA 1B01A 2BJ3A 1IRQA 1MYLA 1QTGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NLA A;  2CA9 A;  1X93 A;  2HZA A;  1MYK A;  1ARR A;  2K29 A;  2WVD A;  2RBF A;  1BDV A;  2BNZ A;  3OD2 A;  2BA3 A;  2WVC A;  1EA4 A;  2CPG A;  3GXQ A;  2JXH A;  2CAX A;  1BDT A;  1BAZ A;  2JXG A;  2BJ7 A;  2K6L A;  2KEL A;  4FXE A;  2HZV A;  1U9P A;  2BJ8 A;  3LGH A;  2JXI A;  1P94 A;  3VEB A;  2BJ1 A;  1Q5V A;  3FMT A;  3FT7 A;  3VW4 A;  1PAR A;  3H87 C;  2K9I A;  2BNW A;  4D8J A;  2CAD A;  3QOQ A;  2K5J A;  2BSQ E;  1ARQ A;  3VEA A;  1MNT A;  1B28 A;  2WVF A;  2AY0 A;  2BJ9 A;  4HV0 A;  2WVB A;  2WVE A;  2CAJ A;  2GPE A;  2H1O E;  4ME7 E;  2K1O A;  1B01 A;  2BJ3 A;  1IRQ A;  1MYL A;  1QTG A; 
#chains in the Genus database with same CATH topology
 3UPF A;  1NLA A;  1X93 A;  2RBF A;  1SH3 A;  2JXH A;  1QTG A;  1BAZ A;  4FXE A;  2BJ7 A;  4AAI A;  1U9P A;  2JXI A;  1SIW A;  3VEB A;  3FMT A;  2A2B A;  3SFG A;  2BNW A;  2ADL A;  2JBV A;  2AN7 A;  2B43 A;  3BSN A;  2BSQ E;  1MNT A;  2WVF A;  2AY0 A;  4ME7 E;  2K1O A;  3H5Y A;  3QOQ A;  3NAH A;  2CA9 A;  1MYK A;  1ARR A;  1OG7 A;  1BDV A;  3OD2 A;  2BA3 A;  1EA4 A;  2K6L A;  2KEL A;  4NRT A;  2BJ8 A;  2WK4 A;  4LQ3 A;  1PAR A;  2KKE A;  3H87 C;  2CKW A;  2CAD A;  4D8J A;  1B28 A;  2GPE A;  2H1O E;  1B01 A;  2Q2K A;  1MYL A;  2WVE A;  4QPX A;  2UUW A;  2BNZ A;  3G5O A;  2WVC A;  3GXQ A;  4O4R A;  2CAX A;  1BDT A;  2JXG A;  3LGH A;  3UR0 A;  1P94 A;  3BSO A;  3NNE A;  1ARQ A;  3VEA A;  2BJ9 A;  4LQ9 A;  2WVB A;  3IR7 A;  3NO7 A;  2UUT A;  2KOE A;  2BJ3 A;  1OHN A;  1IRQ A;  2HZA A;  2K29 A;  2WVD A;  3H5X A;  2HZV A;  1Q16 A;  2BJ1 A;  1Q5V A;  3UQS A;  3FT7 A;  3VW4 A;  4LRV A;  2K9I A;  4MJW A;  3SFU A;  1SH2 A;  2H3A A;  2K5J A;  4NRU A;  3QID A;  4HV0 A;  1SH0 A;  2CAJ A;  3NAI A;  2CPG A;  3LJP A; 
#chains in the Genus database with same CATH homology
 1NLA A;  2CA9 A;  1X93 A;  2HZA A;  1MYK A;  1ARR A;  2K29 A;  2WVD A;  2RBF A;  1BDV A;  2BNZ A;  3OD2 A;  2BA3 A;  2WVC A;  1EA4 A;  2CPG A;  3GXQ A;  2JXH A;  2CAX A;  1BDT A;  1BAZ A;  2JXG A;  2BJ7 A;  2K6L A;  2KEL A;  4FXE A;  2HZV A;  1U9P A;  2BJ8 A;  3LGH A;  2JXI A;  1P94 A;  3VEB A;  2BJ1 A;  1Q5V A;  3FMT A;  3FT7 A;  3VW4 A;  1PAR A;  3H87 C;  2K9I A;  2BNW A;  4D8J A;  2CAD A;  3QOQ A;  2K5J A;  2BSQ E;  1ARQ A;  3VEA A;  1MNT A;  1B28 A;  2WVF A;  2AY0 A;  2BJ9 A;  4HV0 A;  2WVB A;  2WVE A;  2CAJ A;  2GPE A;  2H1O E;  4ME7 E;  2K1O A;  1B01 A;  2BJ3 A;  1IRQ A;  1MYL A;  1QTG A; 
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