3HCGA

Structure of the c-terminal domain (msrb) of neisseria meningitidis pilb (reduced form)
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
145
structure length
145
Chain Sequence
YKKPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCGWPSFTRPIDAKSVTEHDDFSYNMRRTEVRSHAADSHLGHVFPDGPRDKGGLRYCINGASLKFIPLEQMDAAGYGALKSKVK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Peptide methionine sulfoxide reductase msrA/msrB
publication title Methionine sulfoxide reductase B displays a high level of flexibility.
pubmed doi rcsb
source organism Neisseria meningitidis serogroup a
total genus 39
structure length 145
sequence length 145
chains with identical sequence B, C, D
ec nomenclature ec 1.8.4.11: Peptide-methionine (S)-S-oxide reductase.
pdb deposition date 2009-05-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01641 SelR SelR domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.150.20 Mainly Beta Beta Complex Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A Peptide methionine sulfoxide reductase. 3hcgA00
3E0MA 1L1DA 3WX1A 2K8DA 3WX2A 4V31A 3CEZA 4TZ4C 5AMHA 3E0OA 4V2YA 4TZUA 2KZNA 4CI1B 3HCJA 4V30A 3HCIA 4CI3B 3HCHA 2KV1A 4TZCA 3MAOA 3CXKA 4V2ZA 3HCGA 4CI2B
chains in the Genus database with same CATH superfamily
3LRRA 2HR9A 2RQBA 2RMJA 3E0MA 2LVLA 1L1DA 3WX1A 2K8DA 1H7YA 3WX2A 1TXJA 2RQAA 3CEZA 4V31A 4BPBA 5F9HA 4TZ4C 5E3HA 3LRNA 3OG8A 3NCUA 3EQTA 5AMHA 2QFDA 2LOYA 2KWBA 3E0OA 5F9FA 4A2XA 4V2YA 1H6QA 4TZUA 2KZNA 1YZ1A 4CI1B 3ZD6A 3HCJA 4A2VA 4V30A 3HCIA 4CI3B 3HCHA 1FWQA 3GA3A 2KV1A 3EBMA 3P3KA 4AY2A 4TZCA 5F98A 3FACA 3DJMA 2YKGA 3MAOA 2QFBA 1HXRA 3CXKA 4V2ZA 3HCGA 2W4RA 3ZD7A 4CI2B 2FU5A
chains in the Genus database with same CATH topology
3E0MA 1L1DA 3WX1A 2K8DA 3WX2A 4V31A 3CEZA 4TZ4C 5AMHA 3E0OA 4V2YA 4TZUA 2KZNA 4CI1B 3HCJA 4V30A 3HCIA 4CI3B 3HCHA 2KV1A 4TZCA 3MAOA 3CXKA 4V2ZA 3HCGA 4CI2B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3E0M A;  1L1D A;  3WX1 A;  2K8D A;  3WX2 A;  4V31 A;  3CEZ A;  4TZ4 C;  5AMH A;  3E0O A;  4V2Y A;  4TZU A;  2KZN A;  4CI1 B;  3HCJ A;  4V30 A;  3HCI A;  4CI3 B;  3HCH A;  2KV1 A;  4TZC A;  3MAO A;  3CXK A;  4V2Z A;  3HCG A;  4CI2 B; 
#chains in the Genus database with same CATH topology
 3LRR A;  2HR9 A;  2RQB A;  2RMJ A;  3E0M A;  2LVL A;  1L1D A;  3WX1 A;  2K8D A;  1H7Y A;  3WX2 A;  1TXJ A;  2RQA A;  3CEZ A;  4V31 A;  4BPB A;  5F9H A;  4TZ4 C;  5E3H A;  3LRN A;  3OG8 A;  3NCU A;  3EQT A;  5AMH A;  2QFD A;  2LOY A;  2KWB A;  3E0O A;  5F9F A;  4A2X A;  4V2Y A;  1H6Q A;  4TZU A;  2KZN A;  1YZ1 A;  4CI1 B;  3ZD6 A;  3HCJ A;  4A2V A;  4V30 A;  3HCI A;  4CI3 B;  3HCH A;  1FWQ A;  3GA3 A;  2KV1 A;  3EBM A;  3P3K A;  4AY2 A;  4TZC A;  5F98 A;  3FAC A;  3DJM A;  2YKG A;  3MAO A;  2QFB A;  1HXR A;  3CXK A;  4V2Z A;  3HCG A;  2W4R A;  3ZD7 A;  4CI2 B;  2FU5 A; 
#chains in the Genus database with same CATH homology
 3E0M A;  1L1D A;  3WX1 A;  2K8D A;  3WX2 A;  4V31 A;  3CEZ A;  4TZ4 C;  5AMH A;  3E0O A;  4V2Y A;  4TZU A;  2KZN A;  4CI1 B;  3HCJ A;  4V30 A;  3HCI A;  4CI3 B;  3HCH A;  2KV1 A;  4TZC A;  3MAO A;  3CXK A;  4V2Z A;  3HCG A;  4CI2 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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