3HCHA

Structure of the c-terminal domain (msrb) of neisseria meningitidis pilb (complex with substrate)
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
145
structure length
145
Chain Sequence
YKKPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGSGWPSFTRPIDAKSVTEHDDFSYNMRRTEVRSHAADSHLGHVFPDGPRDKGGLRYSINGASLKFIPLEQMDAAGYGALKSKVK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Peptide methionine sulfoxide reductase msrA/msrB
publication title Methionine sulfoxide reductase B displays a high level of flexibility.
pubmed doi rcsb
source organism Neisseria meningitidis serogroup a
total genus 38
structure length 145
sequence length 145
chains with identical sequence B
ec nomenclature ec 1.8.4.11: Peptide-methionine (S)-S-oxide reductase.
pdb deposition date 2009-05-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01641 SelR SelR domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.150.20 Mainly Beta Beta Complex Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A Peptide methionine sulfoxide reductase. 3hchA00
3E0OA 3MAOA 4V2ZA 4CI2B 3HCIA 3WX1A 4TZCA 4V31A 2KV1A 3CXKA 4TZUA 3CEZA 5AMHA 4TZ4C 3E0MA 3WX2A 3HCGA 4V2YA 4V30A 2KZNA 4CI3B 1L1DA 4CI1B 2K8DA 3HCHA 3HCJA
chains in the Genus database with same CATH superfamily
1FWQA 3E0OA 3EQTA 3MAOA 5F9HA 4V2ZA 4CI2B 4BPBA 3ZD6A 4A2XA 3HCIA 2W4RA 3WX1A 2QFBA 3HCHA 3LRNA 4TZCA 4V31A 3ZD7A 2KWBA 2KV1A 3CXKA 5F9FA 2RMJA 3GA3A 2LOYA 3CEZA 4TZUA 5AMHA 4TZ4C 2YKGA 5F98A 4AY2A 3NCUA 1H6QA 5E3HA 3FACA 3OG8A 3E0MA 2RQAA 3WX2A 3HCGA 4A2VA 2RQBA 1H7YA 2HR9A 4V2YA 2LVLA 1HXRA 4V30A 2KZNA 4CI3B 3EBMA 2QFDA 1L1DA 4CI1B 1TXJA 3LRRA 2K8DA 1YZ1A 3DJMA 2FU5A 3P3KA 3HCJA
chains in the Genus database with same CATH topology
3E0OA 3MAOA 4V2ZA 4CI2B 3HCIA 3WX1A 4TZCA 4V31A 2KV1A 3CXKA 4TZUA 3CEZA 5AMHA 4TZ4C 3E0MA 3WX2A 3HCGA 4V2YA 4V30A 2KZNA 4CI3B 1L1DA 4CI1B 2K8DA 3HCHA 3HCJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3E0O A;  3MAO A;  4V2Z A;  4CI2 B;  3HCI A;  3WX1 A;  4TZC A;  4V31 A;  2KV1 A;  3CXK A;  4TZU A;  3CEZ A;  5AMH A;  4TZ4 C;  3E0M A;  3WX2 A;  3HCG A;  4V2Y A;  4V30 A;  2KZN A;  4CI3 B;  1L1D A;  4CI1 B;  2K8D A;  3HCH A;  3HCJ A; 
#chains in the Genus database with same CATH topology
 1FWQ A;  3E0O A;  3EQT A;  3MAO A;  5F9H A;  4V2Z A;  4CI2 B;  4BPB A;  3ZD6 A;  4A2X A;  3HCI A;  2W4R A;  3WX1 A;  2QFB A;  3HCH A;  3LRN A;  4TZC A;  4V31 A;  3ZD7 A;  2KWB A;  2KV1 A;  3CXK A;  5F9F A;  2RMJ A;  3GA3 A;  2LOY A;  3CEZ A;  4TZU A;  5AMH A;  4TZ4 C;  2YKG A;  5F98 A;  4AY2 A;  3NCU A;  1H6Q A;  5E3H A;  3FAC A;  3OG8 A;  3E0M A;  2RQA A;  3WX2 A;  3HCG A;  4A2V A;  2RQB A;  1H7Y A;  2HR9 A;  4V2Y A;  2LVL A;  1HXR A;  4V30 A;  2KZN A;  4CI3 B;  3EBM A;  2QFD A;  1L1D A;  4CI1 B;  1TXJ A;  3LRR A;  2K8D A;  1YZ1 A;  3DJM A;  2FU5 A;  3P3K A;  3HCJ A; 
#chains in the Genus database with same CATH homology
 3E0O A;  3MAO A;  4V2Z A;  4CI2 B;  3HCI A;  3WX1 A;  4TZC A;  4V31 A;  2KV1 A;  3CXK A;  4TZU A;  3CEZ A;  5AMH A;  4TZ4 C;  3E0M A;  3WX2 A;  3HCG A;  4V2Y A;  4V30 A;  2KZN A;  4CI3 B;  1L1D A;  4CI1 B;  2K8D A;  3HCH A;  3HCJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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