3HGKE

Crystal structure of effect protein avrptob complexed with kinase pto
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
77
structure length
77
Chain Sequence
GAVAHANSIVQQLVSEGADISHTRNMLRNAMNGDAVAFSRVEQNIFRQHFPNMPMHGISRDSELAIELRGALRRAVH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
molecule keywords Protein kinase
publication title Crystal Structure of the Complex between Pseudomonas Effector AvrPtoB and the Tomato Pto Kinase Reveals Both a Shared and a Unique Interface Compared with AvrPto-Pto
pubmed doi rcsb
source organism Solanum pimpinellifolium
total genus 22
structure length 77
sequence length 77
chains with identical sequence F, G, H
ec nomenclature ec 6.3.2.-:
pdb deposition date 2009-05-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1280.110 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 3hgkE00
3HGLA 3TJYA 3HGKE 3SVIA
chains in the Genus database with same CATH superfamily
2LF3A 2JHPA 4M3XA 1NEXB 1MTYG 2RKHA 4DTSA 4M3WA 3S9HA 4DTNA 5IREA 1XVFE 2FW3A 4FK2A 4QNCA 2PFTA 2P1MB 4KHSA 2QXFA 2OZSA 2P1NB 2B1EA 2LF6A 3HGLA 3LDSA 1FZ9E 3SPYA 2P5GA 2P1OB 3NE6A 4FK0A 4KHWA 2P1PB 2B7MA 3SVIA 3TAFA 3QNOA 4FJJA 4FJXA 2OZMA 3TABA 1XMFE 4ICGC 4X5NA 4M3YA 4FJNA 4DTXA 2P5OA 1XMGE 5IBKB 3SUNA 4I9LA 1FZ0E 2P1QB 3MKSB 4EP9A 3E4WA 3NDKA 2JQTA 3N1BA 4IT5A 1FZ4E 4QNDA 1P22A 4AKGA 1WAJA 3NCIA 4DU3A 4M42A 3QETA 3NAEA 3HP9A 4KHYA 2MMBA 4EPHA 4M3ZA 4JS5A 4KHQA 1MMOG 4FJKA 1FXXA 1Q9YA 4FJIA 4ADNA 1IG9A 4HCCA 4AI6A 1FZ1E 2RCUA 4FJ9A 3LD8A 4EYWA 1LDKE 3QEVA 3C6PB 1FZ7E 4DTMA 4ADOA 3UO2A 3OGLB 1XVDE 2OVPB 3UO3A 1FPOA 2JHAA 2ATQA 4X5MA 1MHYG 3TJYA 3SUPA 3SQ1A 4B08A 2JH8A 2DTUA 2E32A 3K2OA 1XU3E 3SQ2A 3UIQA 2DY4A 1XL3C 2HD0A 4J2DA 1FZ8E 3QNNA 2VJ5A 4M3UA 2JH9A 3OGKB 3C95A 3LZIA 2VJ4A 4E4BA 2JPNA 3SUQA 1XVEE 1FZIE 3TAGA 4RG8A 1FYZE 3HGKE 4HCBA 1JW2A 3TL8B 4M3TA 3CFOA 4KI4A 4FJ7A 3SCXA 4DTJA 2MZWB 2H4TA 2YB5A 4FJGA 4J2AA 1CLQA 2FYOA 4JS4A 3HL8A 3QEIA 3J2PA 3QEXA 3KD1E 3RWUA 4J2BA 1FZHE 2OYQA 4M41A 1Q9XA 3QEPA 3QEWA 4KI6A 3L2OB 1XMHE 3L1NA 4M3RA 3LZJA 4DU4A 4E3SA 2JHCA 3E4YA 4KHNA 4FJ8A 3LDBA 3KD5E 3CFRA 3SPZA 3CQ8A 1FZ5E 4I6JB 4JRQA 3OGMB 5H37A 1WAFA 2VIXA 2PFVA 3L0MA 4RNGA 1XVBE 2OVQB 1FZ2E 1XVGE 3CFPA 4JRPA 4DTPA 3QERA 3WSOA 3TAEA 3SQ0A 4FJMA 2K5SA 4GAMC 3NHGA 4AKIA 3SI6A 3C6NB 3C6OB 1XU5E 1XVCE 1IH7A 3SQ4A 3SUOA 2OVRB 4DTRA 4KHUA 4AKHA 2DEBA 3BVOA 4FK4A 2E31A 3L8BA 1FS1A 3V7DB 1N1CA 3NGIA 3RMCA 4J2EA 4M45A 3N1EA 4DTOA 3C94A 5IZ7A 4I9QA 3J27A 4DTUA 3SNNA 4FJLA 1FZ6E 1FZ3E 4FVMA 4DU1A 2B8IA 3RMDA 3RMAA 4FJ5A 4RL5A 4FJHA 1MHZG 2MW2A 3QESA 3SJJA 3RMBA
chains in the Genus database with same CATH topology
2LF3A 2JHPA 4M3XA 1NEXB 1MTYG 4M3WA 4DTSA 3S9HA 4DTNA 5IREA 1XVFE 2FW3A 4FK2A 4QNCA 2PFTA 2P1MB 4KHSA 2QXFA 2OZSA 2P1NB 2B1EA 2LF6A 3HGLA 3LDSA 1FZ9E 3SPYA 2P5GA 2P1OB 3NE6A 4FK0A 4KHWA 2P1PB 2B7MA 3SVIA 3TAFA 3QNOA 4FJJA 4FJXA 2OZMA 3TABA 1XMFE 4X5NA 4M3YA 4FJNA 4DTXA 2P5OA 1XMGE 5IBKB 3SUNA 4I9LA 1FZ0E 2P1QB 3MKSB 4EP9A 3E4WA 3NDKA 3N1BA 1FZ4E 4QNDA 1P22A 4AKGA 1WAJA 3NCIA 4DU3A 4M42A 3QETA 3NAEA 3HP9A 4KHYA 2MMBA 4EPHA 4M3ZA 4JS5A 4KHQA 1MMOG 4FJKA 1FXXA 1Q9YA 4FJIA 4ADNA 1IG9A 4HCCA 4AI6A 1FZ1E 2RCUA 4FJ9A 3LD8A 4EYWA 1LDKE 3QEVA 3C6PB 1FZ7E 4DTMA 4ADOA 3OGLB 1XVDE 2OVPB 2JHAA 2ATQA 4X5MA 1MHYG 3TJYA 3SUPA 3SQ1A 4B08A 2JH8A 2DTUA 2E32A 3K2OA 1XU3E 3SQ2A 3UIQA 2DY4A 1XL3C 2HD0A 1FZ8E 3QNNA 2VJ5A 4M3UA 2JH9A 3OGKB 3C95A 3LZIA 2VJ4A 4E4BA 2JPNA 3SUQA 1XVEE 1FZIE 3TAGA 4RG8A 1FYZE 3HGKE 4HCBA 3TL8B 4M3TA 3CFOA 4KI4A 4FJ7A 3SCXA 4DTJA 2MZWB 2H4TA 2YB5A 4FJGA 4J2AA 1CLQA 2FYOA 4JS4A 3HL8A 3QEIA 3J2PA 3QEXA 3KD1E 3RWUA 4J2BA 1FZHE 2OYQA 4M41A 1Q9XA 3QEPA 3QEWA 4KI6A 3L2OB 1XMHE 3L1NA 4M3RA 3LZJA 4DU4A 4E3SA 2JHCA 3E4YA 4KHNA 4FJ8A 3LDBA 3KD5E 3CFRA 3SPZA 3CQ8A 1FZ5E 4I6JB 4JRQA 3OGMB 5H37A 1WAFA 2VIXA 2PFVA 3L0MA 4RNGA 1XVBE 2OVQB 1FZ2E 1XVGE 3CFPA 4JRPA 4DTPA 3QERA 3WSOA 3TAEA 3SQ0A 4FJMA 4J2DA 4GAMC 3NHGA 4AKIA 3SI6A 3C6NB 3C6OB 1XU5E 1XVCE 1IH7A 3SQ4A 3SUOA 2OVRB 4DTRA 4KHUA 4AKHA 2DEBA 4FK4A 2E31A 3L8BA 1FS1A 3V7DB 3RMCA 3NGIA 4J2EA 4M45A 3N1EA 4DTOA 3C94A 5IZ7A 4I9QA 3J27A 4DTUA 3SNNA 4FJLA 1FZ6E 1FZ3E 4FVMA 4DU1A 2B8IA 3RMDA 3RMAA 4FJ5A 4RL5A 4FJHA 1MHZG 3QESA 3SJJA 3RMBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HGL A;  3TJY A;  3HGK E;  3SVI A; 
#chains in the Genus database with same CATH topology
 2LF3 A;  2JHP A;  4M3X A;  1NEX B;  1MTY G;  2RKH A;  4DTS A;  4M3W A;  3S9H A;  4DTN A;  5IRE A;  1XVF E;  2FW3 A;  4FK2 A;  4QNC A;  2PFT A;  2P1M B;  4KHS A;  2QXF A;  2OZS A;  2P1N B;  2B1E A;  2LF6 A;  3HGL A;  3LDS A;  1FZ9 E;  3SPY A;  2P5G A;  2P1O B;  3NE6 A;  4FK0 A;  4KHW A;  2P1P B;  2B7M A;  3SVI A;  3TAF A;  3QNO A;  4FJJ A;  4FJX A;  2OZM A;  3TAB A;  1XMF E;  4ICG C;  4X5N A;  4M3Y A;  4FJN A;  4DTX A;  2P5O A;  1XMG E;  5IBK B;  3SUN A;  4I9L A;  1FZ0 E;  2P1Q B;  3MKS B;  4EP9 A;  3E4W A;  3NDK A;  2JQT A;  3N1B A;  4IT5 A;  1FZ4 E;  4QND A;  1P22 A;  4AKG A;  1WAJ A;  3NCI A;  4DU3 A;  4M42 A;  3QET A;  3NAE A;  3HP9 A;  4KHY A;  2MMB A;  4EPH A;  4M3Z A;  4JS5 A;  4KHQ A;  1MMO G;  4FJK A;  1FXX A;  1Q9Y A;  4FJI A;  4ADN A;  1IG9 A;  4HCC A;  4AI6 A;  1FZ1 E;  2RCU A;  4FJ9 A;  3LD8 A;  4EYW A;  1LDK E;  3QEV A;  3C6P B;  1FZ7 E;  4DTM A;  4ADO A;  3UO2 A;  3OGL B;  1XVD E;  2OVP B;  3UO3 A;  1FPO A;  2JHA A;  2ATQ A;  4X5M A;  1MHY G;  3TJY A;  3SUP A;  3SQ1 A;  4B08 A;  2JH8 A;  2DTU A;  2E32 A;  3K2O A;  1XU3 E;  3SQ2 A;  3UIQ A;  2DY4 A;  1XL3 C;  2HD0 A;  4J2D A;  1FZ8 E;  3QNN A;  2VJ5 A;  4M3U A;  2JH9 A;  3OGK B;  3C95 A;  3LZI A;  2VJ4 A;  4E4B A;  2JPN A;  3SUQ A;  1XVE E;  1FZI E;  3TAG A;  4RG8 A;  1FYZ E;  3HGK E;  4HCB A;  1JW2 A;  3TL8 B;  4M3T A;  3CFO A;  4KI4 A;  4FJ7 A;  3SCX A;  4DTJ A;  2MZW B;  2H4T A;  2YB5 A;  4FJG A;  4J2A A;  1CLQ A;  2FYO A;  4JS4 A;  3HL8 A;  3QEI A;  3J2P A;  3QEX A;  3KD1 E;  3RWU A;  4J2B A;  1FZH E;  2OYQ A;  4M41 A;  1Q9X A;  3QEP A;  3QEW A;  4KI6 A;  3L2O B;  1XMH E;  3L1N A;  4M3R A;  3LZJ A;  4DU4 A;  4E3S A;  2JHC A;  3E4Y A;  4KHN A;  4FJ8 A;  3LDB A;  3KD5 E;  3CFR A;  3SPZ A;  3CQ8 A;  1FZ5 E;  4I6J B;  4JRQ A;  3OGM B;  5H37 A;  1WAF A;  2VIX A;  2PFV A;  3L0M A;  4RNG A;  1XVB E;  2OVQ B;  1FZ2 E;  1XVG E;  3CFP A;  4JRP A;  4DTP A;  3QER A;  3WSO A;  3TAE A;  3SQ0 A;  4FJM A;  2K5S A;  4GAM C;  3NHG A;  4AKI A;  3SI6 A;  3C6N B;  3C6O B;  1XU5 E;  1XVC E;  1IH7 A;  3SQ4 A;  3SUO A;  2OVR B;  4DTR A;  4KHU A;  4AKH A;  2DEB A;  3BVO A;  4FK4 A;  2E31 A;  3L8B A;  1FS1 A;  3V7D B;  1N1C A;  3NGI A;  3RMC A;  4J2E A;  4M45 A;  3N1E A;  4DTO A;  3C94 A;  5IZ7 A;  4I9Q A;  3J27 A;  4DTU A;  3SNN A;  4FJL A;  1FZ6 E;  1FZ3 E;  4FVM A;  4DU1 A;  2B8I A;  3RMD A;  3RMA A;  4FJ5 A;  4RL5 A;  4FJH A;  1MHZ G;  2MW2 A;  3QES A;  3SJJ A;  3RMB A; 
#chains in the Genus database with same CATH homology
 2LF3 A;  2JHP A;  4M3X A;  1NEX B;  1MTY G;  4M3W A;  4DTS A;  3S9H A;  4DTN A;  5IRE A;  1XVF E;  2FW3 A;  4FK2 A;  4QNC A;  2PFT A;  2P1M B;  4KHS A;  2QXF A;  2OZS A;  2P1N B;  2B1E A;  2LF6 A;  3HGL A;  3LDS A;  1FZ9 E;  3SPY A;  2P5G A;  2P1O B;  3NE6 A;  4FK0 A;  4KHW A;  2P1P B;  2B7M A;  3SVI A;  3TAF A;  3QNO A;  4FJJ A;  4FJX A;  2OZM A;  3TAB A;  1XMF E;  4X5N A;  4M3Y A;  4FJN A;  4DTX A;  2P5O A;  1XMG E;  5IBK B;  3SUN A;  4I9L A;  1FZ0 E;  2P1Q B;  3MKS B;  4EP9 A;  3E4W A;  3NDK A;  3N1B A;  1FZ4 E;  4QND A;  1P22 A;  4AKG A;  1WAJ A;  3NCI A;  4DU3 A;  4M42 A;  3QET A;  3NAE A;  3HP9 A;  4KHY A;  2MMB A;  4EPH A;  4M3Z A;  4JS5 A;  4KHQ A;  1MMO G;  4FJK A;  1FXX A;  1Q9Y A;  4FJI A;  4ADN A;  1IG9 A;  4HCC A;  4AI6 A;  1FZ1 E;  2RCU A;  4FJ9 A;  3LD8 A;  4EYW A;  1LDK E;  3QEV A;  3C6P B;  1FZ7 E;  4DTM A;  4ADO A;  3OGL B;  1XVD E;  2OVP B;  2JHA A;  2ATQ A;  4X5M A;  1MHY G;  3TJY A;  3SUP A;  3SQ1 A;  4B08 A;  2JH8 A;  2DTU A;  2E32 A;  3K2O A;  1XU3 E;  3SQ2 A;  3UIQ A;  2DY4 A;  1XL3 C;  2HD0 A;  1FZ8 E;  3QNN A;  2VJ5 A;  4M3U A;  2JH9 A;  3OGK B;  3C95 A;  3LZI A;  2VJ4 A;  4E4B A;  2JPN A;  3SUQ A;  1XVE E;  1FZI E;  3TAG A;  4RG8 A;  1FYZ E;  3HGK E;  4HCB A;  3TL8 B;  4M3T A;  3CFO A;  4KI4 A;  4FJ7 A;  3SCX A;  4DTJ A;  2MZW B;  2H4T A;  2YB5 A;  4FJG A;  4J2A A;  1CLQ A;  2FYO A;  4JS4 A;  3HL8 A;  3QEI A;  3J2P A;  3QEX A;  3KD1 E;  3RWU A;  4J2B A;  1FZH E;  2OYQ A;  4M41 A;  1Q9X A;  3QEP A;  3QEW A;  4KI6 A;  3L2O B;  1XMH E;  3L1N A;  4M3R A;  3LZJ A;  4DU4 A;  4E3S A;  2JHC A;  3E4Y A;  4KHN A;  4FJ8 A;  3LDB A;  3KD5 E;  3CFR A;  3SPZ A;  3CQ8 A;  1FZ5 E;  4I6J B;  4JRQ A;  3OGM B;  5H37 A;  1WAF A;  2VIX A;  2PFV A;  3L0M A;  4RNG A;  1XVB E;  2OVQ B;  1FZ2 E;  1XVG E;  3CFP A;  4JRP A;  4DTP A;  3QER A;  3WSO A;  3TAE A;  3SQ0 A;  4FJM A;  4J2D A;  4GAM C;  3NHG A;  4AKI A;  3SI6 A;  3C6N B;  3C6O B;  1XU5 E;  1XVC E;  1IH7 A;  3SQ4 A;  3SUO A;  2OVR B;  4DTR A;  4KHU A;  4AKH A;  2DEB A;  4FK4 A;  2E31 A;  3L8B A;  1FS1 A;  3V7D B;  3RMC A;  3NGI A;  4J2E A;  4M45 A;  3N1E A;  4DTO A;  3C94 A;  5IZ7 A;  4I9Q A;  3J27 A;  4DTU A;  3SNN A;  4FJL A;  1FZ6 E;  1FZ3 E;  4FVM A;  4DU1 A;  2B8I A;  3RMD A;  3RMA A;  4FJ5 A;  4RL5 A;  4FJH A;  1MHZ G;  3QES A;  3SJJ A;  3RMB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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