3HIBA

Crystal structure of the second sec63 domain of yeast brr2
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
312
structure length
309
Chain Sequence
LIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKGDRALLVKLSKRLPLRFPEHTSSGSVSFKVFLLLQAYFSRLELPVDFQNDLKDILEKVVPLINVVVDILSANGYLNATTAMDLAQMLIQGVWDVDNPLRQIPHFNNKILEKCKEINVETVYDIMALEDEERDEILTLTDSQLAQVAAFVNNYPNVELTYSLNNSDSGVKQKITIQLTRDVEPENLQVTSEKYPFDKLESWWLVLGEVSKKELYAIKKVTLNKETQQYELEFDTPTSGKHNLTIWCVCDSYLDADKELSFEINV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords Pre-mRNA-splicing helicase BRR2
publication title Structural evidence for consecutive Hel308-like modules in the spliceosomal ATPase Brr2.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 83
structure length 309
sequence length 312
ec nomenclature ec 3.6.4.13: RNA helicase.
pdb deposition date 2009-05-19
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3380.10 Mainly Alpha Orthogonal Bundle Sec63 N-terminal domain-like fold Sec63 N-terminal domain-like domain 3hibA01
4KITB 3HIBA 4F92B 3IM2A 4BGDA 4F93B 4F91B 2Q0ZX 3IM1A
chains in the Genus database with same CATH superfamily
4KITB 2ZJ8A 3HIBA 2ZJAA 4BUJA 2P6RA 2ZJ5A 4F91B 4F92B 2XGJA 3IM2A 4BGDA 4F93B 2ZJ2A 2VA8A 2P6UA 2Q0ZX 3IM1A
chains in the Genus database with same CATH topology
4KITB 3HIBA 4F92B 3IM2A 4BGDA 4F93B 4F91B 2Q0ZX 3IM1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KIT B;  3HIB A;  4F92 B;  3IM2 A;  4BGD A;  4F93 B;  4F91 B;  2Q0Z X;  3IM1 A; 
#chains in the Genus database with same CATH topology
 4KIT B;  2ZJ8 A;  3HIB A;  2ZJA A;  4BUJ A;  2P6R A;  2ZJ5 A;  4F91 B;  4F92 B;  2XGJ A;  3IM2 A;  4BGD A;  4F93 B;  2ZJ2 A;  2VA8 A;  2P6U A;  2Q0Z X;  3IM1 A; 
#chains in the Genus database with same CATH homology
 4KIT B;  3HIB A;  4F92 B;  3IM2 A;  4BGD A;  4F93 B;  4F91 B;  2Q0Z X;  3IM1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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