3HJLA

The structure of full-length flig from aquifex aeolicus
Total Genus 121
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
121
sequence length
321
structure length
321
Chain Sequence
KSALSKAQKAAVLLLSLPEEVSMNIVKELSEEELQKLFALAKDLESVPEEEIENIAEELLDEIKKAGIKIKKPEEFIENIKKVIPPTLAEKFRGILELGDAEKILKEIEKVDSRILASLLKNEHPQTIALFLSQLSPKKSAEIIQNLPEELKKEVVKRIATLENVNVQYVKELAQILLEEISSLGAKEALKLEGTAVAAELLNTLDKETRELILQSIGQEDPLLEERIREKMFTFEDIRKLSDRDIIEILKVVDKNTLMIALLGAPEDIKQKFLSNMSKRAAKLFLEDMEALGPVKKSEIEKAQRQVVNIIRKMIDEGKIE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Proton transport
molecule keywords Flagellar motor switch protein fliG
publication title Structure of the torque ring of the flagellar motor and the molecular basis for rotational switching
pubmed doi rcsb
source organism Aquifex aeolicus
total genus 121
structure length 321
sequence length 321
ec nomenclature
pdb deposition date 2009-05-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01706 FliG_C FliG C-terminal domain
A PF14841 FliG_M FliG middle domain
A PF14842 FliG_N FliG N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.220.30 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin V; domain 1 3hjlA04
1.10.220.30 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin V; domain 1 3hjlA01
1.10.220.30 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin V; domain 1 3hjlA02
3USWA 1LKVX 3AJCA 3HJLA 3USYA 1QC7A 4FQ0C 3SOHB 4FHRB
chains in the Genus database with same CATH superfamily
2K6XA 1XJLA 2IICA 1R8ME 4D7RA 4KN7X 1KU1A 3L8NA 1A8BA 4MDVA 1MCXA 2XO2A 3ABRA 1UPTB 1SAVA 1HVFA 1W3WA 2XO3A 2HYWA 1AIIA 1R4AE 1HVGA 4L5MA 2ZOCA 4C0AA 1A8AA 3AJCA 4EVFA 4Z21A 2R0DA 4JMOA 1BO9A 1Q8DA 4MDUA 1N44A 2VXGA 1YJ0A 4HREA 4EVHA 4JMIA 1N41A 4Q2SA 2QEZA 1ALAA 1ANXA 1W45A 1XT0B 2H0MA 1DK5A 1YGMA 3ABQA 1ANWA 2HSNA 1HM6A 1BC9A 2OY9A 2II2A 1LKVX 3HJLA 1N42A 1HVEA 4JWLA 4JXHA 2RANA 1AEIA 3TW5A 2IE6A 2HYUA 4FQ0C 3ABOA 1YCNA 2ZHJA 1BC3A 1HAKA 4D7QA 1G5NA 1BC0A 3ABSA 3SWVA 1AVRA 1AXNA 1BCZA 3BRXA 1BC1A 1AVHA 4A4PA 4JK1X 1I4AA 1QC7A 3LTLA 1M9IA 1HVDA 3USWA 2ZHIA 4C7PA 2H0LA 1R8SE 1XSZA 1R8QE 1S9DE 4X9PA 4KMUX 3ANYA 3USYA 2HYVA 1YIIA 3AO0A 1W7BA 1DM5A 1N00A 4OIYA 2H0KA 1C1KA 4KN4X 2IE7A 2Q4CA 4FHRB 1PBVA 1ANNA 1AOWA 1BCYA 1RE0B 2R09A 1AVCA 3SOHB 1BCWA
chains in the Genus database with same CATH topology
3USWA 2K6XA 4C7PA 3TW5A 1R8ME 3SOHB 1R8SE 4KN7X 4D7RA 4FQ0C 1XSZA 1KU1A 1R8QE 1S9DE 4JMIA 3L8NA 4D7QA 4KMUX 3USYA 1XT0B 2HSNA 3SWVA 4OIYA 4KN4X 1BC9A 4L5MA 4FHRB 4C0AA 1PBVA 1LKVX 3AJCA 3HJLA 4JK1X 1RE0B 4JWLA 2R09A 4JXHA 4A4PA 4Z21A 1QC7A 3LTLA 2R0DA 4JMOA 1Q8DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3USW A;  1LKV X;  3AJC A;  3HJL A;  3USY A;  1QC7 A;  4FQ0 C;  3SOH B;  4FHR B; 
#chains in the Genus database with same CATH topology
 2K6X A;  1XJL A;  2IIC A;  1R8M E;  4D7R A;  4KN7 X;  1KU1 A;  3L8N A;  1A8B A;  4MDV A;  1MCX A;  2XO2 A;  3ABR A;  1UPT B;  1SAV A;  1HVF A;  1W3W A;  2XO3 A;  2HYW A;  1AII A;  1R4A E;  1HVG A;  4L5M A;  2ZOC A;  4C0A A;  1A8A A;  3AJC A;  4EVF A;  4Z21 A;  2R0D A;  4JMO A;  1BO9 A;  1Q8D A;  4MDU A;  1N44 A;  2VXG A;  1YJ0 A;  4HRE A;  4EVH A;  4JMI A;  1N41 A;  4Q2S A;  2QEZ A;  1ALA A;  1ANX A;  1W45 A;  1XT0 B;  2H0M A;  1DK5 A;  1YGM A;  3ABQ A;  1ANW A;  2HSN A;  1HM6 A;  1BC9 A;  2OY9 A;  2II2 A;  1LKV X;  3HJL A;  1N42 A;  1HVE A;  4JWL A;  4JXH A;  2RAN A;  1AEI A;  3TW5 A;  2IE6 A;  2HYU A;  4FQ0 C;  3ABO A;  1YCN A;  2ZHJ A;  1BC3 A;  1HAK A;  4D7Q A;  1G5N A;  1BC0 A;  3ABS A;  3SWV A;  1AVR A;  1AXN A;  1BCZ A;  3BRX A;  1BC1 A;  1AVH A;  4A4P A;  4JK1 X;  1I4A A;  1QC7 A;  3LTL A;  1M9I A;  1HVD A;  3USW A;  2ZHI A;  4C7P A;  2H0L A;  1R8S E;  1XSZ A;  1R8Q E;  1S9D E;  4X9P A;  4KMU X;  3ANY A;  3USY A;  2HYV A;  1YII A;  3AO0 A;  1W7B A;  1DM5 A;  1N00 A;  4OIY A;  2H0K A;  1C1K A;  4KN4 X;  2IE7 A;  2Q4C A;  4FHR B;  1PBV A;  1ANN A;  1AOW A;  1BCY A;  1RE0 B;  2R09 A;  1AVC A;  3SOH B;  1BCW A; 
#chains in the Genus database with same CATH homology
 3USW A;  2K6X A;  4C7P A;  3TW5 A;  1R8M E;  3SOH B;  1R8S E;  4KN7 X;  4D7R A;  4FQ0 C;  1XSZ A;  1KU1 A;  1R8Q E;  1S9D E;  4JMI A;  3L8N A;  4D7Q A;  4KMU X;  3USY A;  1XT0 B;  2HSN A;  3SWV A;  4OIY A;  4KN4 X;  1BC9 A;  4L5M A;  4FHR B;  4C0A A;  1PBV A;  1LKV X;  3AJC A;  3HJL A;  4JK1 X;  1RE0 B;  4JWL A;  2R09 A;  4JXH A;  4A4P A;  4Z21 A;  1QC7 A;  3LTL A;  2R0D A;  4JMO A;  1Q8D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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