3HK9A

Crystal structure of uronate isomerase from bacillus halodurans complexed with zinc and d-glucuronate
Total Genus 168
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
168
sequence length
413
structure length
413
Chain Sequence
SINSREVLAEKVKNAVNNQPVTDMHTHLFSPNFGEILLWDIDELLTYHYLVAEVMRWTDVSIEAFWAMSKREQADLIWEELFIKRSPVSEACRGVLTCLQGLGLDPATRDLQVYREYFAKKTSEEQVDTVLQLANVSDVVMTNDPFDDNERISWLEGKQPDSRFHAALRLDPLLNEYEQTKHRLRDWGYKVNDEWNEGSIQEVKRFLTDWIERMDPVYMAVSLPPTFSFPEESNRGRIIRDCLLPVAEKHNIPFAMMIGVKKRVHPALGDAGDFVGKASMDGVEHLLREYPNNKFLVTMLSRENQHELVVLARKFSNLMIFGCWWFMNNPEIINEMTRMRMEMLGTSFIPQHSDARVLEQLIYKWHHSKSIIAEVLIDKYDDILQAGWEVTEEEIKRDVADLFSRNFWRFVGR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Isomerase
molecule keywords Uronate isomerase
publication title The mechanism of the reaction catalyzed by uronate isomerase illustrates how an isomerase may have evolved from a hydrolase within the amidohydrolase superfamily.
pubmed doi rcsb
source organism Bacillus halodurans c-125
total genus 168
structure length 413
sequence length 413
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L
ec nomenclature
pdb deposition date 2009-05-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.2020.10 Mainly Alpha Orthogonal Bundle uronate isomerase, domain 2, chain A uronate isomerase, domain 2, chain A 3hk9A02
3IACA 2Q6EA 4I6VA 3HK9A 3HK5A 3HK8A 1J5SA 3HKAA 3HK7A 2Q01A 2Q08A 2PNKA 2QEEA
chains in the Genus database with same CATH superfamily
3IACA 2Q6EA 4I6VA 3HK9A 3HK5A 3HK8A 1J5SA 3HKAA 3HK7A 2Q01A 2Q08A 2PNKA 2QEEA
chains in the Genus database with same CATH topology
3IACA 2Q6EA 4I6VA 3HK9A 3HK5A 3HK8A 1J5SA 3HKAA 3HK7A 2Q01A 2Q08A 2PNKA 2QEEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3IAC A;  2Q6E A;  4I6V A;  3HK9 A;  3HK5 A;  3HK8 A;  1J5S A;  3HKA A;  3HK7 A;  2Q01 A;  2Q08 A;  2PNK A;  2QEE A; 
#chains in the Genus database with same CATH topology
 3IAC A;  2Q6E A;  4I6V A;  3HK9 A;  3HK5 A;  3HK8 A;  1J5S A;  3HKA A;  3HK7 A;  2Q01 A;  2Q08 A;  2PNK A;  2QEE A; 
#chains in the Genus database with same CATH homology
 3IAC A;  2Q6E A;  4I6V A;  3HK9 A;  3HK5 A;  3HK8 A;  1J5S A;  3HKA A;  3HK7 A;  2Q01 A;  2Q08 A;  2PNK A;  2QEE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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