3HMLA

Crystal structure of pqqc active site mutant h154s in complex with pqq
Total Genus 85
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
85
sequence length
252
structure length
237
Chain Sequence
LITDTLSPQAFEEALRAKGDFYHIHHPYHIAMHNGNATREQIQGWVANRFYYQTTIPLKDAAIMANCPDAQTRRKWVQRILDHDGSDGGIEAWLRLGEAVGLSRDDLLSERHVLPGVRFAVDAYLNFARRACWQEAACSSLTELFAPSWPQHYPWIKEEGYFYFRSRLSDVEHGLALAKAYCDSAEKQNRMLEILQFKLDILWSMLDAMTMAYALQRPPYHTVTDKAAWHTTRLVLE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Pyrroloquinoline-quinone synthase
publication title Structural studies of mutant forms of the PQQ-forming enzyme PqqC in the presence of product and substrate
pubmed doi rcsb
source organism Klebsiella pneumoniae subsp. pneumoniae
total genus 85
structure length 237
sequence length 252
chains with identical sequence B
ec nomenclature ec 1.3.3.11: Pyrroloquinoline-quinone synthase.
pdb deposition date 2009-05-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03070 TENA_THI-4 TENA/THI-4/PQQC family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.910.10 Mainly Alpha Up-down Bundle Heme Oxygenase; Chain A Heme oxygenase-like 3hmlA00
4WD4A 2A6BA 1TWRA 4G7TA 4RAJA 1IRMA 1J02A 1S13A 2F2GA 2GM7A 2Q32A 1IW0A 1DVEA 4LQXA 1DVGA 1OYKA 3RM5A 2QZCA 1T5PA 4G99A 1IX3A 1S8CA 2E7EA 3B5OA 1N3UA 1RTWA 1P3UA 3I8RA 3I9TA 1UDDA 1P3VA 1WOVA 1XK1A 1OTWA 4WWZA 4G98A 1YAKA 1WNWA 1OZLA 1J2CA 1NI6A 3B5PA 1WZFA 1TO9B 1WNXA 3I9UA 1WE1A 3IBXA 4G8UA 3TGMA 4G7LA 2QPPA 3K4FA 4NY7A 1TWNA 1VGIA 1SK7A 3NO6A 2GM8A 1IX4A 1IW1A 1XK0A 1J77A 4GPFA 3MOOA 1Z72A 1WWMA 1RCWA 2QCXA 4MECA 3HNHA 1WZGA 1WOWA 1WNVA 1XK3A 2Z68A 5BTQA 2DY5A 2A2OA 4G8WA 4WMHA 1IVJA 3HMLA 1ULXA 1OZEA 1OTVA 1WOXA 4G7PA 1XK2A 1UBBA 1OZRA 4WWJA 4WX0A 1YAFA 3OQLA 2RGZA 1OYLA 1V8XA 3MVUA 2A2MA 4G7UA 3HOKA 3CZYA 4GPCA 1P3TA 2Q4XA 3HLXA 1OZWA 1N45A 3DDEA 4FN6A 4GPHA 1XJZA 3BJDA 4GOHA 4G8PA 1WZDA 2RD3A 1TO9A 1TYHA 2ZVUA
chains in the Genus database with same CATH superfamily
4WD4A 2A6BA 1TWRA 4G7TA 4RAJA 1IRMA 1J02A 1S13A 2F2GA 2GM7A 2Q32A 1IW0A 1DVEA 4LQXA 1DVGA 1OYKA 3RM5A 2QZCA 1T5PA 4G99A 1IX3A 1S8CA 2E7EA 3B5OA 1N3UA 1RTWA 1P3UA 3I8RA 3I9TA 1UDDA 1P3VA 1WOVA 1XK1A 1OTWA 4WWZA 4G98A 1YAKA 1WNWA 1OZLA 1J2CA 1NI6A 3B5PA 1WZFA 1TO9B 1WNXA 3I9UA 1WE1A 2LCUA 3IBXA 4G8UA 3TGMA 4G7LA 2QPPA 3K4FA 4NY7A 1TWNA 1VGIA 1SK7A 3NO6A 2GM8A 1IX4A 1IW1A 1XK0A 1J77A 4GPFA 3MOOA 1Z72A 1WWMA 1RCWA 2QCXA 4MECA 3HNHA 1WZGA 1WOWA 1WNVA 1XK3A 2Z68A 5BTQA 2DY5A 2A2OA 4G8WA 4WMHA 1IVJA 3HMLA 1ULXA 1OZEA 1OTVA 1WOXA 4G7PA 1XK2A 1UBBA 1OZRA 4WWJA 4WX0A 1YAFA 3OQLA 2RGZA 1OYLA 1V8XA 3MVUA 2A2MA 4G7UA 3HOKA 3CZYA 4GPCA 1P3TA 2Q4XA 3HLXA 1OZWA 1N45A 3DDEA 4FN6A 4GPHA 1XJZA 3BJDA 4GOHA 4G8PA 1WZDA 2RD3A 1TO9A 1TYHA 2ZVUA
chains in the Genus database with same CATH topology
4WD4A 2A6BA 1TWRA 4G7TA 4RAJA 1IRMA 1J02A 1S13A 2F2GA 2GM7A 2Q32A 1IW0A 1DVEA 4LQXA 1DVGA 1OYKA 3RM5A 2QZCA 1T5PA 4G99A 1IX3A 1S8CA 2E7EA 3B5OA 1N3UA 1RTWA 1P3UA 3I8RA 3I9TA 1UDDA 1P3VA 1WOVA 1XK1A 1OTWA 4WWZA 4G98A 1YAKA 1WNWA 1OZLA 1J2CA 1NI6A 3B5PA 1WZFA 1TO9B 1WNXA 3I9UA 1WE1A 3IBXA 4G8UA 3TGMA 4G7LA 2QPPA 3K4FA 4NY7A 1TWNA 1VGIA 1SK7A 3NO6A 2GM8A 1IX4A 1IW1A 1XK0A 1J77A 4GPFA 3MOOA 1Z72A 1WWMA 1RCWA 2QCXA 4MECA 3HNHA 1WZGA 1WOWA 1WNVA 1XK3A 2Z68A 5BTQA 2DY5A 2A2OA 4G8WA 4WMHA 1IVJA 3HMLA 1ULXA 1OZEA 1OTVA 1WOXA 4G7PA 1XK2A 1UBBA 1OZRA 4WWJA 4WX0A 1YAFA 3OQLA 2RGZA 1OYLA 1V8XA 3MVUA 2A2MA 4G7UA 3HOKA 3CZYA 4GPCA 1P3TA 2Q4XA 3HLXA 1OZWA 1N45A 3DDEA 4FN6A 4GPHA 1XJZA 3BJDA 4GOHA 4G8PA 1WZDA 2RD3A 1TO9A 1TYHA 2ZVUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4WD4 A;  2A6B A;  1TWR A;  4G7T A;  4RAJ A;  1IRM A;  1J02 A;  1S13 A;  2F2G A;  2GM7 A;  2Q32 A;  1IW0 A;  1DVE A;  4LQX A;  1DVG A;  1OYK A;  3RM5 A;  2QZC A;  1T5P A;  4G99 A;  1IX3 A;  1S8C A;  2E7E A;  3B5O A;  1N3U A;  1RTW A;  1P3U A;  3I8R A;  3I9T A;  1UDD A;  1P3V A;  1WOV A;  1XK1 A;  1OTW A;  4WWZ A;  4G98 A;  1YAK A;  1WNW A;  1OZL A;  1J2C A;  1NI6 A;  3B5P A;  1WZF A;  1TO9 B;  1WNX A;  3I9U A;  1WE1 A;  3IBX A;  4G8U A;  3TGM A;  4G7L A;  2QPP A;  3K4F A;  4NY7 A;  1TWN A;  1VGI A;  1SK7 A;  3NO6 A;  2GM8 A;  1IX4 A;  1IW1 A;  1XK0 A;  1J77 A;  4GPF A;  3MOO A;  1Z72 A;  1WWM A;  1RCW A;  2QCX A;  4MEC A;  3HNH A;  1WZG A;  1WOW A;  1WNV A;  1XK3 A;  2Z68 A;  5BTQ A;  2DY5 A;  2A2O A;  4G8W A;  4WMH A;  1IVJ A;  3HML A;  1ULX A;  1OZE A;  1OTV A;  1WOX A;  4G7P A;  1XK2 A;  1UBB A;  1OZR A;  4WWJ A;  4WX0 A;  1YAF A;  3OQL A;  2RGZ A;  1OYL A;  1V8X A;  3MVU A;  2A2M A;  4G7U A;  3HOK A;  3CZY A;  4GPC A;  1P3T A;  2Q4X A;  3HLX A;  1OZW A;  1N45 A;  3DDE A;  4FN6 A;  4GPH A;  1XJZ A;  3BJD A;  4GOH A;  4G8P A;  1WZD A;  2RD3 A;  1TO9 A;  1TYH A;  2ZVU A; 
#chains in the Genus database with same CATH topology
 4WD4 A;  2A6B A;  1TWR A;  4G7T A;  4RAJ A;  1IRM A;  1J02 A;  1S13 A;  2F2G A;  2GM7 A;  2Q32 A;  1IW0 A;  1DVE A;  4LQX A;  1DVG A;  1OYK A;  3RM5 A;  2QZC A;  1T5P A;  4G99 A;  1IX3 A;  1S8C A;  2E7E A;  3B5O A;  1N3U A;  1RTW A;  1P3U A;  3I8R A;  3I9T A;  1UDD A;  1P3V A;  1WOV A;  1XK1 A;  1OTW A;  4WWZ A;  4G98 A;  1YAK A;  1WNW A;  1OZL A;  1J2C A;  1NI6 A;  3B5P A;  1WZF A;  1TO9 B;  1WNX A;  3I9U A;  1WE1 A;  2LCU A;  3IBX A;  4G8U A;  3TGM A;  4G7L A;  2QPP A;  3K4F A;  4NY7 A;  1TWN A;  1VGI A;  1SK7 A;  3NO6 A;  2GM8 A;  1IX4 A;  1IW1 A;  1XK0 A;  1J77 A;  4GPF A;  3MOO A;  1Z72 A;  1WWM A;  1RCW A;  2QCX A;  4MEC A;  3HNH A;  1WZG A;  1WOW A;  1WNV A;  1XK3 A;  2Z68 A;  5BTQ A;  2DY5 A;  2A2O A;  4G8W A;  4WMH A;  1IVJ A;  3HML A;  1ULX A;  1OZE A;  1OTV A;  1WOX A;  4G7P A;  1XK2 A;  1UBB A;  1OZR A;  4WWJ A;  4WX0 A;  1YAF A;  3OQL A;  2RGZ A;  1OYL A;  1V8X A;  3MVU A;  2A2M A;  4G7U A;  3HOK A;  3CZY A;  4GPC A;  1P3T A;  2Q4X A;  3HLX A;  1OZW A;  1N45 A;  3DDE A;  4FN6 A;  4GPH A;  1XJZ A;  3BJD A;  4GOH A;  4G8P A;  1WZD A;  2RD3 A;  1TO9 A;  1TYH A;  2ZVU A; 
#chains in the Genus database with same CATH homology
 4WD4 A;  2A6B A;  1TWR A;  4G7T A;  4RAJ A;  1IRM A;  1J02 A;  1S13 A;  2F2G A;  2GM7 A;  2Q32 A;  1IW0 A;  1DVE A;  4LQX A;  1DVG A;  1OYK A;  3RM5 A;  2QZC A;  1T5P A;  4G99 A;  1IX3 A;  1S8C A;  2E7E A;  3B5O A;  1N3U A;  1RTW A;  1P3U A;  3I8R A;  3I9T A;  1UDD A;  1P3V A;  1WOV A;  1XK1 A;  1OTW A;  4WWZ A;  4G98 A;  1YAK A;  1WNW A;  1OZL A;  1J2C A;  1NI6 A;  3B5P A;  1WZF A;  1TO9 B;  1WNX A;  3I9U A;  1WE1 A;  3IBX A;  4G8U A;  3TGM A;  4G7L A;  2QPP A;  3K4F A;  4NY7 A;  1TWN A;  1VGI A;  1SK7 A;  3NO6 A;  2GM8 A;  1IX4 A;  1IW1 A;  1XK0 A;  1J77 A;  4GPF A;  3MOO A;  1Z72 A;  1WWM A;  1RCW A;  2QCX A;  4MEC A;  3HNH A;  1WZG A;  1WOW A;  1WNV A;  1XK3 A;  2Z68 A;  5BTQ A;  2DY5 A;  2A2O A;  4G8W A;  4WMH A;  1IVJ A;  3HML A;  1ULX A;  1OZE A;  1OTV A;  1WOX A;  4G7P A;  1XK2 A;  1UBB A;  1OZR A;  4WWJ A;  4WX0 A;  1YAF A;  3OQL A;  2RGZ A;  1OYL A;  1V8X A;  3MVU A;  2A2M A;  4G7U A;  3HOK A;  3CZY A;  4GPC A;  1P3T A;  2Q4X A;  3HLX A;  1OZW A;  1N45 A;  3DDE A;  4FN6 A;  4GPH A;  1XJZ A;  3BJD A;  4GOH A;  4G8P A;  1WZD A;  2RD3 A;  1TO9 A;  1TYH A;  2ZVU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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