The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
161
|
sequence length |
505
|
structure length |
480
|
Chain Sequence |
GMHIHILGICGTFMGSLALLARALGHTVTGSDANIYPPMSTQLEQAGVTIEEGYLIAHLQPAPDLVVVGNAMKRGMDVIEYMLDTGLRYTSGPQFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYAGIDAGFLIGGVPLVNTTDTNLQQVFAHSSYLGTEKDDSDNSVNTGYFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDDLDAIQTQFHHMVRMIPSTGKIIMPAATISLEDTLAKGVWTPIWRTSVIDNSSDWQAELISADGSQFTVSFNDNKEATALVNWSMSGLHNVNNALVAIAAAYNIGVSVKTACAALSAFAGIKRRMELIGDVNDILVFDDFAHHPTAITTTLDGAKKKLADRRLWAIIEPRSNTMKMGIHQDSLAQSATLADHTLWYEPTGLEWGLKEVIDNATIANPSIGSQQVLSSVDDIIKHICTHAKAGDAIVIMSNGGFEGIHQRLLTALGNIVAI
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure and function of the first full-length murein Peptide ligase (mpl) cell wall recycling protein.
pubmed doi rcsb |
| molecule tags |
Ligase
|
| source organism |
Psychrobacter arcticus 273-4
|
| molecule keywords |
UDP-N-acetylmuramate-L-alanine ligase
|
| total genus |
161
|
| structure length |
480
|
| sequence length |
505
|
| ec nomenclature | |
| pdb deposition date | 2009-05-29 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01225 | Mur_ligase | Mur ligase family, catalytic domain |
| A | PF02875 | Mur_ligase_C | Mur ligase family, glutamate ligase domain |
| A | PF08245 | Mur_ligase_M | Mur ligase middle domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | NAD(P)-binding Rossmann-like Domain | ||
| Alpha Beta | 3-Layer(aba) Sandwich | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | Mur-like, catalytic domain | ||
| Alpha Beta | Alpha-Beta Complex | Protein-Tyrosine Phosphatase; Chain A | Mur ligase, C-terminal domain |
