3HOKA

X-ray crystal structure of human heme oxygenase-1 with (2r, 4s)-2-[2-(4-chlorophenyl)ethyl]-2-[(1h-imidazol-1-yl)methyl]-4[((5-trifluoromethylpyridin-2-yl)thio)methyl]-1,3-dioxolane: a novel, inducible binding mode
Total Genus 76
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
76
sequence length
214
structure length
214
Chain Sequence
PQDLSEALKEATKEVHTQAENAEFMRNFQKGQVTRDGFKLVMASLYHIYVALEEEIERNKESPVFAPVYFPEELHRKAALEQDLAFWYGPRWQEVIPYTPAMQRYVKRLHEVGRTEPELLVAHAYTRYLGDLSGGQVLKKIAQKALDLPSSGEGLAFFTFPNIASATKFKQLYRSRMNSLEMTPAVRQRVIEEAKTAFLLNIQLFEELQELLTH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Heme oxygenase 1
publication title X-ray crystal structure of human heme oxygenase-1 with (2R,4S)-2-[2-(4-chlorophenyl)ethyl]-2-[(1H-imidazol-1-yl)methyl]-4[((5-trifluoromethylpyridin-2-yl)thio)methyl]-1,3-dioxolane: a novel, inducible binding mode.
pubmed doi rcsb
source organism Homo sapiens
total genus 76
structure length 214
sequence length 214
chains with identical sequence B
ec nomenclature ec 1.14.14.18: Heme oxygenase (biliverdin-producing).
pdb deposition date 2009-06-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01126 Heme_oxygenase Heme oxygenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.910.10 Mainly Alpha Up-down Bundle Heme Oxygenase; Chain A Heme oxygenase-like 3hokA00
1WZGA 4WWJA 3IBXA 1S13A 4GPCA 3MVUA 4G7TA 4RAJA 3DDEA 1TWRA 3MOOA 4GPHA 1P3VA 4G7UA 5BTQA 4G99A 4G8UA 2Q32A 1WOXA 1WZFA 1OZEA 1TWNA 1OZLA 3I9TA 4GPFA 1YAFA 3HMLA 4WWZA 1IX3A 1WNVA 1T5PA 1XK3A 1UBBA 1RTWA 4WX0A 2GM8A 1XK1A 3B5PA 1OYLA 3K4FA 1ULXA 1WZDA 1UDDA 4NY7A 1P3UA 4GOHA 1IRMA 1NI6A 1IVJA 1J77A 2Q4XA 3RM5A 1OTVA 1SK7A 1XK0A 4G7PA 4G98A 1RCWA 1V8XA 1XJZA 2RGZA 1J2CA 1IW1A 1DVGA 3I9UA 1P3TA 1TO9B 2DY5A 2A2OA 3HLXA 2Z68A 1WE1A 1VGIA 1N45A 3B5OA 1WOVA 2RD3A 3CZYA 1TO9A 3BJDA 1OTWA 3HNHA 1WNXA 1YAKA 1J02A 2GM7A 4G8PA 1Z72A 2QZCA 3NO6A 4LQXA 2ZVUA 1OYKA 2QCXA 4G7LA 1TYHA 3OQLA 1DVEA 3HOKA 1IX4A 1OZRA 3TGMA 1N3UA 1WOWA 4FN6A 2E7EA 2F2GA 1WNWA 4MECA 1XK2A 2A6BA 1OZWA 4WD4A 2A2MA 1IW0A 4WMHA 1S8CA 1WWMA 4G8WA 2QPPA 3I8RA
chains in the Genus database with same CATH superfamily
1WZGA 4WWJA 3IBXA 1S13A 4GPCA 3MVUA 4G7TA 4RAJA 3DDEA 1TWRA 3MOOA 4GPHA 1P3VA 4G7UA 5BTQA 4G99A 4G8UA 2Q32A 1WOXA 1WZFA 1OZEA 1TWNA 1OZLA 3I9TA 4GPFA 1YAFA 3HMLA 2LCUA 4WWZA 1IX3A 1WNVA 1T5PA 1XK3A 1UBBA 1RTWA 4WX0A 2GM8A 1XK1A 3B5PA 1OYLA 3K4FA 1ULXA 1WZDA 1UDDA 4NY7A 1P3UA 4GOHA 1IRMA 1NI6A 1IVJA 1J77A 2Q4XA 3RM5A 1OTVA 1SK7A 1XK0A 4G7PA 4G98A 1RCWA 1V8XA 1XJZA 2RGZA 1J2CA 1IW1A 1DVGA 3I9UA 1P3TA 1TO9B 2DY5A 2A2OA 3HLXA 2Z68A 1WE1A 1VGIA 1N45A 3B5OA 1WOVA 2RD3A 3CZYA 1TO9A 3BJDA 1OTWA 3HNHA 1WNXA 1YAKA 1J02A 2GM7A 4G8PA 1Z72A 2QZCA 3NO6A 4LQXA 2ZVUA 1OYKA 2QCXA 4G7LA 1TYHA 3OQLA 1DVEA 3HOKA 1IX4A 1OZRA 3TGMA 1N3UA 1WOWA 4FN6A 2E7EA 2F2GA 1WNWA 4MECA 1XK2A 2A6BA 1OZWA 4WD4A 2A2MA 1IW0A 4WMHA 1S8CA 1WWMA 4G8WA 2QPPA 3I8RA
chains in the Genus database with same CATH topology
1WZGA 4WWJA 3IBXA 1S13A 4GPCA 3MVUA 4G7TA 4RAJA 3DDEA 1TWRA 3MOOA 4GPHA 1P3VA 4G7UA 5BTQA 4G99A 4G8UA 2Q32A 1WOXA 1WZFA 1OZEA 1TWNA 1OZLA 3I9TA 4GPFA 1YAFA 3HMLA 4WWZA 1IX3A 1WNVA 1T5PA 1XK3A 1UBBA 1RTWA 4WX0A 2GM8A 1XK1A 3B5PA 1OYLA 3K4FA 1ULXA 1WZDA 1UDDA 4NY7A 1P3UA 4GOHA 1IRMA 1NI6A 1IVJA 1J77A 2Q4XA 3RM5A 1OTVA 1SK7A 1XK0A 4G7PA 4G98A 1RCWA 1V8XA 1XJZA 2RGZA 1J2CA 1IW1A 1DVGA 3I9UA 1P3TA 1TO9B 2DY5A 2A2OA 3HLXA 2Z68A 1WE1A 1VGIA 1N45A 3B5OA 1WOVA 2RD3A 3CZYA 1TO9A 3BJDA 1OTWA 3HNHA 1WNXA 1YAKA 1J02A 2GM7A 4G8PA 1Z72A 2QZCA 3NO6A 4LQXA 2ZVUA 1OYKA 2QCXA 4G7LA 1TYHA 3OQLA 1DVEA 3HOKA 1IX4A 1OZRA 3TGMA 1N3UA 1WOWA 4FN6A 2E7EA 2F2GA 1WNWA 4MECA 1XK2A 2A6BA 1OZWA 4WD4A 2A2MA 1IW0A 4WMHA 1S8CA 1WWMA 4G8WA 2QPPA 3I8RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WZG A;  4WWJ A;  3IBX A;  1S13 A;  4GPC A;  3MVU A;  4G7T A;  4RAJ A;  3DDE A;  1TWR A;  3MOO A;  4GPH A;  1P3V A;  4G7U A;  5BTQ A;  4G99 A;  4G8U A;  2Q32 A;  1WOX A;  1WZF A;  1OZE A;  1TWN A;  1OZL A;  3I9T A;  4GPF A;  1YAF A;  3HML A;  4WWZ A;  1IX3 A;  1WNV A;  1T5P A;  1XK3 A;  1UBB A;  1RTW A;  4WX0 A;  2GM8 A;  1XK1 A;  3B5P A;  1OYL A;  3K4F A;  1ULX A;  1WZD A;  1UDD A;  4NY7 A;  1P3U A;  4GOH A;  1IRM A;  1NI6 A;  1IVJ A;  1J77 A;  2Q4X A;  3RM5 A;  1OTV A;  1SK7 A;  1XK0 A;  4G7P A;  4G98 A;  1RCW A;  1V8X A;  1XJZ A;  2RGZ A;  1J2C A;  1IW1 A;  1DVG A;  3I9U A;  1P3T A;  1TO9 B;  2DY5 A;  2A2O A;  3HLX A;  2Z68 A;  1WE1 A;  1VGI A;  1N45 A;  3B5O A;  1WOV A;  2RD3 A;  3CZY A;  1TO9 A;  3BJD A;  1OTW A;  3HNH A;  1WNX A;  1YAK A;  1J02 A;  2GM7 A;  4G8P A;  1Z72 A;  2QZC A;  3NO6 A;  4LQX A;  2ZVU A;  1OYK A;  2QCX A;  4G7L A;  1TYH A;  3OQL A;  1DVE A;  3HOK A;  1IX4 A;  1OZR A;  3TGM A;  1N3U A;  1WOW A;  4FN6 A;  2E7E A;  2F2G A;  1WNW A;  4MEC A;  1XK2 A;  2A6B A;  1OZW A;  4WD4 A;  2A2M A;  1IW0 A;  4WMH A;  1S8C A;  1WWM A;  4G8W A;  2QPP A;  3I8R A; 
#chains in the Genus database with same CATH topology
 1WZG A;  4WWJ A;  3IBX A;  1S13 A;  4GPC A;  3MVU A;  4G7T A;  4RAJ A;  3DDE A;  1TWR A;  3MOO A;  4GPH A;  1P3V A;  4G7U A;  5BTQ A;  4G99 A;  4G8U A;  2Q32 A;  1WOX A;  1WZF A;  1OZE A;  1TWN A;  1OZL A;  3I9T A;  4GPF A;  1YAF A;  3HML A;  2LCU A;  4WWZ A;  1IX3 A;  1WNV A;  1T5P A;  1XK3 A;  1UBB A;  1RTW A;  4WX0 A;  2GM8 A;  1XK1 A;  3B5P A;  1OYL A;  3K4F A;  1ULX A;  1WZD A;  1UDD A;  4NY7 A;  1P3U A;  4GOH A;  1IRM A;  1NI6 A;  1IVJ A;  1J77 A;  2Q4X A;  3RM5 A;  1OTV A;  1SK7 A;  1XK0 A;  4G7P A;  4G98 A;  1RCW A;  1V8X A;  1XJZ A;  2RGZ A;  1J2C A;  1IW1 A;  1DVG A;  3I9U A;  1P3T A;  1TO9 B;  2DY5 A;  2A2O A;  3HLX A;  2Z68 A;  1WE1 A;  1VGI A;  1N45 A;  3B5O A;  1WOV A;  2RD3 A;  3CZY A;  1TO9 A;  3BJD A;  1OTW A;  3HNH A;  1WNX A;  1YAK A;  1J02 A;  2GM7 A;  4G8P A;  1Z72 A;  2QZC A;  3NO6 A;  4LQX A;  2ZVU A;  1OYK A;  2QCX A;  4G7L A;  1TYH A;  3OQL A;  1DVE A;  3HOK A;  1IX4 A;  1OZR A;  3TGM A;  1N3U A;  1WOW A;  4FN6 A;  2E7E A;  2F2G A;  1WNW A;  4MEC A;  1XK2 A;  2A6B A;  1OZW A;  4WD4 A;  2A2M A;  1IW0 A;  4WMH A;  1S8C A;  1WWM A;  4G8W A;  2QPP A;  3I8R A; 
#chains in the Genus database with same CATH homology
 1WZG A;  4WWJ A;  3IBX A;  1S13 A;  4GPC A;  3MVU A;  4G7T A;  4RAJ A;  3DDE A;  1TWR A;  3MOO A;  4GPH A;  1P3V A;  4G7U A;  5BTQ A;  4G99 A;  4G8U A;  2Q32 A;  1WOX A;  1WZF A;  1OZE A;  1TWN A;  1OZL A;  3I9T A;  4GPF A;  1YAF A;  3HML A;  4WWZ A;  1IX3 A;  1WNV A;  1T5P A;  1XK3 A;  1UBB A;  1RTW A;  4WX0 A;  2GM8 A;  1XK1 A;  3B5P A;  1OYL A;  3K4F A;  1ULX A;  1WZD A;  1UDD A;  4NY7 A;  1P3U A;  4GOH A;  1IRM A;  1NI6 A;  1IVJ A;  1J77 A;  2Q4X A;  3RM5 A;  1OTV A;  1SK7 A;  1XK0 A;  4G7P A;  4G98 A;  1RCW A;  1V8X A;  1XJZ A;  2RGZ A;  1J2C A;  1IW1 A;  1DVG A;  3I9U A;  1P3T A;  1TO9 B;  2DY5 A;  2A2O A;  3HLX A;  2Z68 A;  1WE1 A;  1VGI A;  1N45 A;  3B5O A;  1WOV A;  2RD3 A;  3CZY A;  1TO9 A;  3BJD A;  1OTW A;  3HNH A;  1WNX A;  1YAK A;  1J02 A;  2GM7 A;  4G8P A;  1Z72 A;  2QZC A;  3NO6 A;  4LQX A;  2ZVU A;  1OYK A;  2QCX A;  4G7L A;  1TYH A;  3OQL A;  1DVE A;  3HOK A;  1IX4 A;  1OZR A;  3TGM A;  1N3U A;  1WOW A;  4FN6 A;  2E7E A;  2F2G A;  1WNW A;  4MEC A;  1XK2 A;  2A6B A;  1OZW A;  4WD4 A;  2A2M A;  1IW0 A;  4WMH A;  1S8C A;  1WWM A;  4G8W A;  2QPP A;  3I8R A; 
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