3HQFA

Crystal structure of restriction endonuclease ecorii n-terminal effector-binding domain in complex with cognate dna
Total Genus 49
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
173
structure length
173
Chain Sequence
HHGSSVFHNWLLEIACENYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSRHFGKTRNEKRITRWGRGSPLQDPENTGALTLLAFKLDEQGGDCKEVNIWVCASTDEEDVIETAIGEVIPGALISGPAGQILGGL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Structural mechanisms for the 5'-CCWGG sequence recognition by the N- and C-terminal domains of EcoRII.
pubmed doi rcsb
molecule tags Hydrolase/dna
source organism Escherichia coli
molecule keywords Restriction endonuclease
total genus 49
structure length 173
sequence length 173
ec nomenclature ec 3.1.21.4: Type II site-specific deoxyribonuclease.
pdb deposition date 2009-06-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09217 EcoRII-N Restriction endonuclease EcoRII, N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.330.10 Mainly Beta Beta Barrel At1g16640 B3 domain DNA-binding pseudobarrel domain 3hqfA00
4LDVA 3HQFA 1WIDA 4LDXA 4LDUA 4LDWA 1YELA 4I1KA 1NA6A 4LDYA
chains in the Genus database with same CATH superfamily
4LDVA 3ZI5A 3HQFA 1N0GA 1WIDA 4LDXA 1N0EA 4LDYA 4LDUA 4LDWA 1YELA 2C1LA 4I1KA 1NA6A 1N0FA
chains in the Genus database with same CATH topology
4LDVA 3HQFA 1WIDA 4LDXA 4LDUA 4LDWA 1YELA 4I1KA 1NA6A 4LDYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LDV A;  3HQF A;  1WID A;  4LDX A;  4LDU A;  4LDW A;  1YEL A;  4I1K A;  1NA6 A;  4LDY A; 
#chains in the Genus database with same CATH topology
 4LDV A;  3ZI5 A;  3HQF A;  1N0G A;  1WID A;  4LDX A;  1N0E A;  4LDY A;  4LDU A;  4LDW A;  1YEL A;  2C1L A;  4I1K A;  1NA6 A;  1N0F A; 
#chains in the Genus database with same CATH homology
 4LDV A;  3HQF A;  1WID A;  4LDX A;  4LDU A;  4LDW A;  1YEL A;  4I1K A;  1NA6 A;  4LDY A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...