3HQIA

Structures of spop-substrate complexes: insights into molecular architectures of btb-cul3 ubiquitin ligases: spopmathx/btb/3-box-pucsbc1
Total Genus 67
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
67
sequence length
304
structure length
294
Chain Sequence
GSKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSNDKLKWCLRVNPKGLDSKDYLSLYLLLVSCPKEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding, ligase
source organism Homo sapiens
publication title Structures of SPOP-substrate complexes: insights into molecular architectures of BTB-Cul3 ubiquitin ligases.
pubmed doi rcsb
molecule keywords Speckle-type POZ protein
total genus 67
structure length 294
sequence length 304
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-06-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00651 BTB BTB/POZ domain
A PF00917 MATH MATH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.210.10 Mainly Beta Sandwich Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 3hqiA01
3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1; Chain A Potassium Channel Kv1.1; Chain A 3hqiA02
3ZJBA 3B84A 1S1GA 4JTAB 1R2BA 2YY9A 1D0AA 4CXIA 5BXBA 1CZYA 1K2FA 2F1WA 1CS3A 2PPIA 4GJHA 3LUTB 3ZUNB 4AWJB 5EUPA 1D0JA 2Z8HA 4BKTB 3OGMA 4JTDB 3HQIA 1QDWA 4CXJA 3KVTA 3IVBA 2E31B 4WQOC 1ZMSA 4YSIA 4UIJA 1YZEA 2P1MA 4I7CA 3M52A 4K8UA 4AP2A 3M8VA 2IF5A 3OHVA 3WSOB 1FLLA 1R29A 2F1XA 2P1PA 1FLKA 3ZRFB 1VCBB 4JGHC 4BGCA 1KZZA 4W9CB 3HU6A 4B9KE 1LB5A 1LB6A 1LDKD 2IZVC 1F3VB 1EODA 3MKSA 3ZTDB 4KG9A 3I3NA 4W9JB 2NZ0B 2P1OA 2P1NA 3C6PA 4EOZA 5H7HA 5BO4C 1HV2A 1QDVA 5IBKA 1NN7A 3M5BA 1FQVB 4W9GB 5H7GA 5E1TA 3HVEB 2C9WC 5BXHA 4ZOUA 5HZGC 3HSVA 3FKCA 4GWNA 4GWMA 4CXTA 4M4EA 3MQRA 4O1VA 2VKPA 2GKWA 4W9HB 3IVVA 1EOFA 2P1QA 3ZKJB 4APFA 4J8ZA 4W9DB 4X3GA 2CR2A 2A79B 3HQMA 3C6NA 3LBZA 5LLIB 1BUOA 5H9MA 2FNJC 3HTMA 1CZZA 1LQBB 4JTCB 1YY6A 4HXIA 3HQLA 1LB4A 3V7DA 1FS1B 4AJYC 3BIMA 4JJQA 1EXBE 3OGLA 4W9EB 4I6JC 2VPKA 3OGKA 2MA9C 4B95B 3ZRCB 5JH5B 3DRZA 3DCGB 1CA9A 3HVEA 2A25A 2F1ZA 3GA1A 3ZTCB 3E4UA 4CP3A 2I2RA 3C6OA 4I7DA 5DADA 2FOJA 1LM8C 4U2NA 4W9HH 1D00A 4W9KB 5FTAA 2FOPA 1NEXA 2R9RB 2E32B 5DAFA 4Z8MA 1DSXA 4B9KB 2F1YA 5HYWB 1CA4A 2ASTA 3LNMB 4W9FB 1D01A 4W9IB 3HQHA 1EOEA 1P22B 2XXNA 4W9LB 4N9F5 3MQSC 4U77A 2OVPA 4C9ZA 1A68A 2OVQA 1R28A 2FOOA 5A15A 1QSCA 1RF3A 3M4TA 3OHUA 3L2OA 2Q81A 4I7BA 1L0AA 1T1DA 2ASSA 2OVRA 4UYIA 4BKSB 4CA1A 5A6RA 4U2MA 4GHUA 5BXDA 2JZ3C 3ZNGB 4CRHA 2AN6A 3IVQA 1FS2B 2IHCA 2NN2A
chains in the Genus database with same CATH superfamily
3ZJBA 3B84A 1S1GA 4JTAB 1R2BA 2YY9A 1D0AA 4CXIA 5BXBA 1CZYA 1K2FA 2F1WA 1CS3A 2PPIA 4GJHA 3LUTB 3ZUNB 4AWJB 5EUPA 1D0JA 2Z8HA 4BKTB 3OGMA 4JTDB 3HQIA 1QDWA 4CXJA 3KVTA 4YY8A 3IVBA 2E31B 4WQOC 1ZMSA 4YSIA 4UIJA 1YZEA 2P1MA 4I7CA 3M52A 4K8UA 4AP2A 3M8VA 2IF5A 3OHVA 3WSOB 1FLLA 1R29A 2F1XA 2P1PA 1FLKA 3DRXA 3ZRFB 1VCBB 4JGHC 4BGCA 1KZZA 4W9CB 3HU6A 4B9KE 1LB5A 1LB6A 1LDKD 2IZVC 1F3VB 1EODA 3MKSA 3ZTDB 4KG9A 3I3NA 4W9JB 2NZ0B 2P1OA 2P1NA 3C6PA 4EOZA 5H7HA 5BO4C 1HV2A 1QDVA 5IBKA 1NN7A 3M5BA 1FQVB 4W9GB 5H7GA 5E1TA 3HVEB 2C9WC 5BXHA 4ZOUA 5HZGC 3HSVA 3FKCA 4GWNA 4GWMA 4CXTA 4M4EA 3MQRA 4O1VA 3DRYA 2VKPA 2GKWA 4W9HB 3IVVA 1EOFA 2P1QA 3ZKJB 4APFA 4J8ZA 4W9DB 4X3GA 2CR2A 2A79B 3HQMA 3C6NA 3LBZA 5LLIB 1BUOA 5H9MA 2FNJC 3HTMA 1CZZA 1LQBB 4JTCB 1YY6A 4HXIA 3HQLA 1LB4A 3V7DA 1FS1B 4AJYC 3BIMA 4JJQA 1EXBE 3OGLA 4W9EB 4I6JC 2VPKA 3OGKA 2MA9C 4B95B 3ZRCB 5JH5B 3DRZA 3DCGB 1CA9A 3HVEA 2A25A 2F1ZA 3GA1A 3ZTCB 3E4UA 4CP3A 2I2RA 3C6OA 4I7DA 5DADA 2FOJA 1LM8C 4U2NA 4W9HH 1D00A 4W9KB 5FTAA 2FOPA 1NEXA 2R9RB 2E32B 5DAFA 4Z8MA 1DSXA 4B9KB 2F1YA 5HYWB 1CA4A 2ASTA 3LNMB 4W9FB 1D01A 4W9IB 3HQHA 1EOEA 1P22B 4ZGCA 2XXNA 4W9LB 4N9F5 3MQSC 4U77A 2OVPA 4C9ZA 1A68A 2OVQA 1R28A 2FOOA 5A15A 1QSCA 1RF3A 3M4TA 3OHUA 3L2OA 2Q81A 4I7BA 1L0AA 1T1DA 2ASSA 2OVRA 4UYIA 4BKSB 4CA1A 5A6RA 4U2MA 4GHUA 5BXDA 2JZ3C 3ZNGB 4CRHA 2AN6A 3IVQA 1FS2B 2IHCA 2NN2A
chains in the Genus database with same CATH topology
3ZJBA 3B84A 1S1GA 4JTAB 1R2BA 2YY9A 1D0AA 4CXIA 5BXBA 1CZYA 1K2FA 2F1WA 1CS3A 2PPIA 4GJHA 3LUTB 3ZUNB 4AWJB 5EUPA 1D0JA 2Z8HA 4BKTB 3OGMA 4JTDB 3HQIA 1QDWA 4CXJA 3KVTA 4YY8A 3IVBA 2E31B 4WQOC 1ZMSA 4YSIA 4UIJA 1YZEA 2P1MA 4I7CA 3M52A 4K8UA 4AP2A 3M8VA 2IF5A 3OHVA 3WSOB 1FLLA 1R29A 2F1XA 2P1PA 1FLKA 3DRXA 3ZRFB 1VCBB 4JGHC 4BGCA 1KZZA 4W9CB 3HU6A 4B9KE 1LB5A 1LB6A 1LDKD 2IZVC 1F3VB 1EODA 3MKSA 3ZTDB 4KG9A 3I3NA 4W9JB 2NZ0B 2P1OA 2P1NA 3C6PA 4EOZA 5H7HA 5BO4C 1HV2A 1QDVA 5IBKA 1NN7A 3M5BA 1FQVB 4W9GB 5H7GA 5E1TA 3HVEB 2C9WC 5BXHA 4ZOUA 5HZGC 3HSVA 3FKCA 4GWNA 4GWMA 4CXTA 4M4EA 3MQRA 4O1VA 3DRYA 2VKPA 2GKWA 4W9HB 3IVVA 1EOFA 2P1QA 3ZKJB 4APFA 4J8ZA 4W9DB 4X3GA 2CR2A 2A79B 3HQMA 3C6NA 3LBZA 5LLIB 1BUOA 5H9MA 2FNJC 3HTMA 1CZZA 1LQBB 4JTCB 1YY6A 4HXIA 3HQLA 1LB4A 3V7DA 1FS1B 4AJYC 3BIMA 4JJQA 1EXBE 3OGLA 4W9EB 4I6JC 2VPKA 3OGKA 2MA9C 4B95B 3ZRCB 5JH5B 3DRZA 3DCGB 1CA9A 3HVEA 2A25A 2F1ZA 3GA1A 3ZTCB 3E4UA 4CP3A 2I2RA 3C6OA 4I7DA 5DADA 2FOJA 1LM8C 4U2NA 4W9HH 1D00A 4W9KB 5FTAA 2FOPA 1NEXA 2R9RB 2E32B 5DAFA 4Z8MA 1DSXA 4B9KB 2F1YA 5HYWB 1CA4A 2ASTA 3LNMB 4W9FB 1D01A 4W9IB 3HQHA 1EOEA 1P22B 4ZGCA 2XXNA 4W9LB 4N9F5 3MQSC 4U77A 2OVPA 4C9ZA 1A68A 2OVQA 1R28A 2FOOA 5A15A 1QSCA 1RF3A 3M4TA 3OHUA 3L2OA 2Q81A 4I7BA 1L0AA 1T1DA 2ASSA 2OVRA 4UYIA 4BKSB 4CA1A 5A6RA 4U2MA 4GHUA 5BXDA 2JZ3C 3ZNGB 4CRHA 2AN6A 3IVQA 1FS2B 2IHCA 2NN2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ZJB A;  3B84 A;  1S1G A;  4JTA B;  1R2B A;  2YY9 A;  1D0A A;  4CXI A;  5BXB A;  1CZY A;  1K2F A;  2F1W A;  1CS3 A;  2PPI A;  4GJH A;  3LUT B;  3ZUN B;  4AWJ B;  5EUP A;  1D0J A;  2Z8H A;  4BKT B;  3OGM A;  4JTD B;  3HQI A;  1QDW A;  4CXJ A;  3KVT A;  3IVB A;  2E31 B;  4WQO C;  1ZMS A;  4YSI A;  4UIJ A;  1YZE A;  2P1M A;  4I7C A;  3M52 A;  4K8U A;  4AP2 A;  3M8V A;  2IF5 A;  3OHV A;  3WSO B;  1FLL A;  1R29 A;  2F1X A;  2P1P A;  1FLK A;  3ZRF B;  1VCB B;  4JGH C;  4BGC A;  1KZZ A;  4W9C B;  3HU6 A;  4B9K E;  1LB5 A;  1LB6 A;  1LDK D;  2IZV C;  1F3V B;  1EOD A;  3MKS A;  3ZTD B;  4KG9 A;  3I3N A;  4W9J B;  2NZ0 B;  2P1O A;  2P1N A;  3C6P A;  4EOZ A;  5H7H A;  5BO4 C;  1HV2 A;  1QDV A;  5IBK A;  1NN7 A;  3M5B A;  1FQV B;  4W9G B;  5H7G A;  5E1T A;  3HVE B;  2C9W C;  5BXH A;  4ZOU A;  5HZG C;  3HSV A;  3FKC A;  4GWN A;  4GWM A;  4CXT A;  4M4E A;  3MQR A;  4O1V A;  2VKP A;  2GKW A;  4W9H B;  3IVV A;  1EOF A;  2P1Q A;  3ZKJ B;  4APF A;  4J8Z A;  4W9D B;  4X3G A;  2CR2 A;  2A79 B;  3HQM A;  3C6N A;  3LBZ A;  5LLI B;  1BUO A;  5H9M A;  2FNJ C;  3HTM A;  1CZZ A;  1LQB B;  4JTC B;  1YY6 A;  4HXI A;  3HQL A;  1LB4 A;  3V7D A;  1FS1 B;  4AJY C;  3BIM A;  4JJQ A;  1EXB E;  3OGL A;  4W9E B;  4I6J C;  2VPK A;  3OGK A;  2MA9 C;  4B95 B;  3ZRC B;  5JH5 B;  3DRZ A;  3DCG B;  1CA9 A;  3HVE A;  2A25 A;  2F1Z A;  3GA1 A;  3ZTC B;  3E4U A;  4CP3 A;  2I2R A;  3C6O A;  4I7D A;  5DAD A;  2FOJ A;  1LM8 C;  4U2N A;  4W9H H;  1D00 A;  4W9K B;  5FTA A;  2FOP A;  1NEX A;  2R9R B;  2E32 B;  5DAF A;  4Z8M A;  1DSX A;  4B9K B;  2F1Y A;  5HYW B;  1CA4 A;  2AST A;  3LNM B;  4W9F B;  1D01 A;  4W9I B;  3HQH A;  1EOE A;  1P22 B;  2XXN A;  4W9L B;  4N9F 5;  3MQS C;  4U77 A;  2OVP A;  4C9Z A;  1A68 A;  2OVQ A;  1R28 A;  2FOO A;  5A15 A;  1QSC A;  1RF3 A;  3M4T A;  3OHU A;  3L2O A;  2Q81 A;  4I7B A;  1L0A A;  1T1D A;  2ASS A;  2OVR A;  4UYI A;  4BKS B;  4CA1 A;  5A6R A;  4U2M A;  4GHU A;  5BXD A;  2JZ3 C;  3ZNG B;  4CRH A;  2AN6 A;  3IVQ A;  1FS2 B;  2IHC A;  2NN2 A; 
#chains in the Genus database with same CATH topology
 3ZJB A;  3B84 A;  1S1G A;  4JTA B;  1R2B A;  2YY9 A;  1D0A A;  4CXI A;  5BXB A;  1CZY A;  1K2F A;  2F1W A;  1CS3 A;  2PPI A;  4GJH A;  3LUT B;  3ZUN B;  4AWJ B;  5EUP A;  1D0J A;  2Z8H A;  4BKT B;  3OGM A;  4JTD B;  3HQI A;  1QDW A;  4CXJ A;  3KVT A;  4YY8 A;  3IVB A;  2E31 B;  4WQO C;  1ZMS A;  4YSI A;  4UIJ A;  1YZE A;  2P1M A;  4I7C A;  3M52 A;  4K8U A;  4AP2 A;  3M8V A;  2IF5 A;  3OHV A;  3WSO B;  1FLL A;  1R29 A;  2F1X A;  2P1P A;  1FLK A;  3DRX A;  3ZRF B;  1VCB B;  4JGH C;  4BGC A;  1KZZ A;  4W9C B;  3HU6 A;  4B9K E;  1LB5 A;  1LB6 A;  1LDK D;  2IZV C;  1F3V B;  1EOD A;  3MKS A;  3ZTD B;  4KG9 A;  3I3N A;  4W9J B;  2NZ0 B;  2P1O A;  2P1N A;  3C6P A;  4EOZ A;  5H7H A;  5BO4 C;  1HV2 A;  1QDV A;  5IBK A;  1NN7 A;  3M5B A;  1FQV B;  4W9G B;  5H7G A;  5E1T A;  3HVE B;  2C9W C;  5BXH A;  4ZOU A;  5HZG C;  3HSV A;  3FKC A;  4GWN A;  4GWM A;  4CXT A;  4M4E A;  3MQR A;  4O1V A;  3DRY A;  2VKP A;  2GKW A;  4W9H B;  3IVV A;  1EOF A;  2P1Q A;  3ZKJ B;  4APF A;  4J8Z A;  4W9D B;  4X3G A;  2CR2 A;  2A79 B;  3HQM A;  3C6N A;  3LBZ A;  5LLI B;  1BUO A;  5H9M A;  2FNJ C;  3HTM A;  1CZZ A;  1LQB B;  4JTC B;  1YY6 A;  4HXI A;  3HQL A;  1LB4 A;  3V7D A;  1FS1 B;  4AJY C;  3BIM A;  4JJQ A;  1EXB E;  3OGL A;  4W9E B;  4I6J C;  2VPK A;  3OGK A;  2MA9 C;  4B95 B;  3ZRC B;  5JH5 B;  3DRZ A;  3DCG B;  1CA9 A;  3HVE A;  2A25 A;  2F1Z A;  3GA1 A;  3ZTC B;  3E4U A;  4CP3 A;  2I2R A;  3C6O A;  4I7D A;  5DAD A;  2FOJ A;  1LM8 C;  4U2N A;  4W9H H;  1D00 A;  4W9K B;  5FTA A;  2FOP A;  1NEX A;  2R9R B;  2E32 B;  5DAF A;  4Z8M A;  1DSX A;  4B9K B;  2F1Y A;  5HYW B;  1CA4 A;  2AST A;  3LNM B;  4W9F B;  1D01 A;  4W9I B;  3HQH A;  1EOE A;  1P22 B;  4ZGC A;  2XXN A;  4W9L B;  4N9F 5;  3MQS C;  4U77 A;  2OVP A;  4C9Z A;  1A68 A;  2OVQ A;  1R28 A;  2FOO A;  5A15 A;  1QSC A;  1RF3 A;  3M4T A;  3OHU A;  3L2O A;  2Q81 A;  4I7B A;  1L0A A;  1T1D A;  2ASS A;  2OVR A;  4UYI A;  4BKS B;  4CA1 A;  5A6R A;  4U2M A;  4GHU A;  5BXD A;  2JZ3 C;  3ZNG B;  4CRH A;  2AN6 A;  3IVQ A;  1FS2 B;  2IHC A;  2NN2 A; 
#chains in the Genus database with same CATH homology
 3ZJB A;  3B84 A;  1S1G A;  4JTA B;  1R2B A;  2YY9 A;  1D0A A;  4CXI A;  5BXB A;  1CZY A;  1K2F A;  2F1W A;  1CS3 A;  2PPI A;  4GJH A;  3LUT B;  3ZUN B;  4AWJ B;  5EUP A;  1D0J A;  2Z8H A;  4BKT B;  3OGM A;  4JTD B;  3HQI A;  1QDW A;  4CXJ A;  3KVT A;  4YY8 A;  3IVB A;  2E31 B;  4WQO C;  1ZMS A;  4YSI A;  4UIJ A;  1YZE A;  2P1M A;  4I7C A;  3M52 A;  4K8U A;  4AP2 A;  3M8V A;  2IF5 A;  3OHV A;  3WSO B;  1FLL A;  1R29 A;  2F1X A;  2P1P A;  1FLK A;  3DRX A;  3ZRF B;  1VCB B;  4JGH C;  4BGC A;  1KZZ A;  4W9C B;  3HU6 A;  4B9K E;  1LB5 A;  1LB6 A;  1LDK D;  2IZV C;  1F3V B;  1EOD A;  3MKS A;  3ZTD B;  4KG9 A;  3I3N A;  4W9J B;  2NZ0 B;  2P1O A;  2P1N A;  3C6P A;  4EOZ A;  5H7H A;  5BO4 C;  1HV2 A;  1QDV A;  5IBK A;  1NN7 A;  3M5B A;  1FQV B;  4W9G B;  5H7G A;  5E1T A;  3HVE B;  2C9W C;  5BXH A;  4ZOU A;  5HZG C;  3HSV A;  3FKC A;  4GWN A;  4GWM A;  4CXT A;  4M4E A;  3MQR A;  4O1V A;  3DRY A;  2VKP A;  2GKW A;  4W9H B;  3IVV A;  1EOF A;  2P1Q A;  3ZKJ B;  4APF A;  4J8Z A;  4W9D B;  4X3G A;  2CR2 A;  2A79 B;  3HQM A;  3C6N A;  3LBZ A;  5LLI B;  1BUO A;  5H9M A;  2FNJ C;  3HTM A;  1CZZ A;  1LQB B;  4JTC B;  1YY6 A;  4HXI A;  3HQL A;  1LB4 A;  3V7D A;  1FS1 B;  4AJY C;  3BIM A;  4JJQ A;  1EXB E;  3OGL A;  4W9E B;  4I6J C;  2VPK A;  3OGK A;  2MA9 C;  4B95 B;  3ZRC B;  5JH5 B;  3DRZ A;  3DCG B;  1CA9 A;  3HVE A;  2A25 A;  2F1Z A;  3GA1 A;  3ZTC B;  3E4U A;  4CP3 A;  2I2R A;  3C6O A;  4I7D A;  5DAD A;  2FOJ A;  1LM8 C;  4U2N A;  4W9H H;  1D00 A;  4W9K B;  5FTA A;  2FOP A;  1NEX A;  2R9R B;  2E32 B;  5DAF A;  4Z8M A;  1DSX A;  4B9K B;  2F1Y A;  5HYW B;  1CA4 A;  2AST A;  3LNM B;  4W9F B;  1D01 A;  4W9I B;  3HQH A;  1EOE A;  1P22 B;  4ZGC A;  2XXN A;  4W9L B;  4N9F 5;  3MQS C;  4U77 A;  2OVP A;  4C9Z A;  1A68 A;  2OVQ A;  1R28 A;  2FOO A;  5A15 A;  1QSC A;  1RF3 A;  3M4T A;  3OHU A;  3L2O A;  2Q81 A;  4I7B A;  1L0A A;  1T1D A;  2ASS A;  2OVR A;  4UYI A;  4BKS B;  4CA1 A;  5A6R A;  4U2M A;  4GHU A;  5BXD A;  2JZ3 C;  3ZNG B;  4CRH A;  2AN6 A;  3IVQ A;  1FS2 B;  2IHC A;  2NN2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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