The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
64
|
sequence length |
303
|
structure length |
284
|
Chain Sequence |
SKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSKLKWCLRVNPKGLDSKDYLSLYLLLVSCPKEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQDSQTMNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Protein binding, ligase
|
| molecule keywords |
Speckle-type POZ protein
|
| publication title |
Structures of SPOP-substrate complexes: insights into molecular architectures of BTB-Cul3 ubiquitin ligases.
pubmed doi rcsb |
| source organism |
Homo sapiens
|
| total genus |
64
|
| structure length |
284
|
| sequence length |
303
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2009-06-13 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00651 | BTB | BTB/POZ domain |
| A | PF00917 | MATH | MATH domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Sandwich | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | ||
| Alpha Beta | 2-Layer Sandwich | Potassium Channel Kv1.1; Chain A | Potassium Channel Kv1.1; Chain A |
#chains in the Genus database with same CATH superfamily 1EOD A; 1A68 A; 2FNJ C; 4B9K E; 1R28 A; 3DCG B; 2E31 B; 1LB5 A; 1EXB E; 3BIM A; 2JZ3 C; 3ZUN B; 2R9R B; 3C6O A; 1RF3 A; 4JTD B; 5H7G A; 1CS3 A; 1FLK A; 2FOP A; 4B95 B; 4B9K B; 5H7H A; 4I6J C; 1FS2 B; 1CZY A; 5LLI B; 4W9C B; 1P22 B; 1L0A A; 3GA1 A; 1FS1 B; 1HV2 A; 4CP3 A; 4J8Z A; 2C9W C; 4YSI A; 3LUT B; 4O1V A; 1D0J A; 3HVE A; 4CRH A; 1ZMS A; 4W9K B; 3OGL A; 2FOO A; 1D0A A; 4I7C A; 1DSX A; 2AST A; 5BXH A; 5H9M A; 1LB6 A; 2P1O A; 1LM8 C; 5FTA A; 1FLL A; 5BXB A; 3HU6 A; 4C9Z A; 2NN2 A; 2YY9 A; 4UIJ A; 5JH5 B; 1YY6 A; 3ZTC B; 3C6N A; 1R2B A; 2OVR A; 3MQR A; 4W9E B; 3DRZ A; 3MKS A; 4K8U A; 3ZKJ B; 4N9F 5; 5HYW B; 4UYI A; 4KG9 A; 4CA1 A; 5HZG C; 2F1Z A; 2GKW A; 2Q81 A; 4JGH C; 5BO4 C; 3HTM A; 1R29 A; 2P1M A; 3E4U A; 4ZOU A; 4BGC A; 4X3G A; 2A79 B; 4U77 A; 4I7B A; 1LDK D; 3C6P A; 1CA9 A; 2ASS A; 3I3N A; 1QSC A; 4AWJ B; 4BKT B; 2F1X A; 3KVT A; 4U2M A; 5DAF A; 1S1G A; 3M8V A; 2Z8H A; 2A25 A; 3HQI A; 3ZNG B; 3HQH A; 2I2R A; 3OGK A; 2IHC A; 2F1W A; 4BKS B; 1BUO A; 3L2O A; 4GJH A; 2F1Y A; 1NN7 A; 2P1N A; 1EOE A; 5A15 A; 4GWN A; 3ZRF B; 1K2F A; 1QDW A; 4I7D A; 2VKP A; 4W9F B; 3ZTD B; 3HSV A; 3WSO B; 2E32 B; 4EOZ A; 4GWM A; 4CXI A; 3M4T A; 2VPK A; 4W9H H; 2XXN A; 3FKC A; 4U2N A; 5IBK A; 2NZ0 B; 3HVE B; 1D01 A; 3LNM B; 1NEX A; 4W9L B; 1EOF A; 4W9G B; 4HXI A; 2AN6 A; 3M52 A; 1LQB B; 1CA4 A; 1QDV A; 2IZV C; 3IVV A; 1KZZ A; 4W9I B; 4AP2 A; 3MQS C; 3HQL A; 4W9H B; 2MA9 C; 1F3V B; 5DAD A; 5A6R A; 2P1P A; 4APF A; 5BXD A; 4WQO C; 3V7D A; 2P1Q A; 3LBZ A; 2FOJ A; 3OGM A; 4W9J B; 3OHV A; 3OHU A; 4W9D B; 5E1T A; 3ZJB A; 2OVQ A; 3M5B A; 5EUP A; 2PPI A; 1CZZ A; 2IF5 A; 4JTC B; 4CXT A; 1LB4 A; 2OVP A; 4AJY C; 3ZRC B; 3B84 A; 4JTA B; 1VCB B; 4Z8M A; 4JJQ A; 1T1D A; 1FQV B; 1YZE A; 3IVB A; 4GHU A; 4M4E A; 3HQM A; 3IVQ A; 2CR2 A; 4CXJ A; 1D00 A; #chains in the Genus database with same CATH topology 1EOD A; 1A68 A; 2FNJ C; 4B9K E; 1R28 A; 3DCG B; 2E31 B; 1LB5 A; 1EXB E; 3BIM A; 2JZ3 C; 3ZUN B; 2R9R B; 3C6O A; 1RF3 A; 4JTD B; 5H7G A; 1CS3 A; 1FLK A; 2FOP A; 4B95 B; 4B9K B; 5H7H A; 4I6J C; 1FS2 B; 1CZY A; 5LLI B; 4W9C B; 1P22 B; 1L0A A; 3GA1 A; 1FS1 B; 1HV2 A; 4CP3 A; 4J8Z A; 2C9W C; 4YSI A; 3LUT B; 4O1V A; 1D0J A; 3HVE A; 4CRH A; 1ZMS A; 4W9K B; 3OGL A; 2FOO A; 1D0A A; 4I7C A; 1DSX A; 2AST A; 5BXH A; 5H9M A; 1LB6 A; 2P1O A; 1LM8 C; 5FTA A; 1FLL A; 5BXB A; 3HU6 A; 4C9Z A; 2NN2 A; 2YY9 A; 4UIJ A; 5JH5 B; 1YY6 A; 3ZTC B; 3C6N A; 1R2B A; 2OVR A; 3MQR A; 4W9E B; 3DRZ A; 3MKS A; 4K8U A; 3DRY A; 4N9F 5; 3ZKJ B; 4UYI A; 5HYW B; 3DRX A; 4KG9 A; 4CA1 A; 5HZG C; 2F1Z A; 2GKW A; 2Q81 A; 4JGH C; 5BO4 C; 3HTM A; 1R29 A; 2P1M A; 3E4U A; 4ZOU A; 4BGC A; 4X3G A; 2A79 B; 4U77 A; 4I7B A; 1LDK D; 3C6P A; 1CA9 A; 2ASS A; 3I3N A; 1QSC A; 4AWJ B; 4BKT B; 4ZGC A; 2F1X A; 3KVT A; 4U2M A; 5DAF A; 1S1G A; 3M8V A; 2Z8H A; 2A25 A; 3HQI A; 3ZNG B; 3HQH A; 2I2R A; 3OGK A; 2IHC A; 2F1W A; 4BKS B; 1BUO A; 3L2O A; 4GJH A; 2F1Y A; 1NN7 A; 2P1N A; 1EOE A; 5A15 A; 4GWN A; 3ZRF B; 1K2F A; 1QDW A; 4I7D A; 2VKP A; 4W9F B; 3ZTD B; 3HSV A; 3WSO B; 2E32 B; 4EOZ A; 4GWM A; 4CXI A; 3M4T A; 2VPK A; 4W9H H; 2XXN A; 3FKC A; 4U2N A; 5IBK A; 2NZ0 B; 3HVE B; 1D01 A; 3LNM B; 1NEX A; 4W9L B; 1EOF A; 4YY8 A; 4W9G B; 4HXI A; 2AN6 A; 3M52 A; 1LQB B; 1CA4 A; 1QDV A; 2IZV C; 3IVV A; 1KZZ A; 4W9I B; 4AP2 A; 3MQS C; 3HQL A; 4W9H B; 2MA9 C; 1F3V B; 5DAD A; 5A6R A; 2P1P A; 4APF A; 5BXD A; 4WQO C; 3V7D A; 2P1Q A; 3LBZ A; 2FOJ A; 3OGM A; 4W9J B; 3OHV A; 3OHU A; 4W9D B; 5E1T A; 3ZJB A; 2OVQ A; 3M5B A; 5EUP A; 2PPI A; 1CZZ A; 2IF5 A; 4JTC B; 4CXT A; 1LB4 A; 2OVP A; 4AJY C; 3ZRC B; 3B84 A; 4JTA B; 1VCB B; 4Z8M A; 4JJQ A; 1T1D A; 1FQV B; 1YZE A; 3IVB A; 4GHU A; 4M4E A; 3HQM A; 3IVQ A; 2CR2 A; 4CXJ A; 1D00 A; #chains in the Genus database with same CATH homology 1EOD A; 1A68 A; 2FNJ C; 4B9K E; 1R28 A; 3DCG B; 2E31 B; 1LB5 A; 1EXB E; 3BIM A; 2JZ3 C; 3ZUN B; 2R9R B; 3C6O A; 1RF3 A; 4JTD B; 5H7G A; 1CS3 A; 1FLK A; 2FOP A; 4B95 B; 4B9K B; 5H7H A; 4I6J C; 1FS2 B; 1CZY A; 5LLI B; 4W9C B; 1P22 B; 1L0A A; 3GA1 A; 1FS1 B; 1HV2 A; 4CP3 A; 4J8Z A; 2C9W C; 4YSI A; 3LUT B; 4O1V A; 1D0J A; 3HVE A; 4CRH A; 1ZMS A; 4W9K B; 3OGL A; 2FOO A; 1D0A A; 4I7C A; 1DSX A; 2AST A; 5BXH A; 5H9M A; 1LB6 A; 2P1O A; 1LM8 C; 5FTA A; 1FLL A; 5BXB A; 3HU6 A; 4C9Z A; 2NN2 A; 2YY9 A; 4UIJ A; 5JH5 B; 1YY6 A; 3ZTC B; 3C6N A; 1R2B A; 2OVR A; 3MQR A; 4W9E B; 3DRZ A; 3MKS A; 4K8U A; 3DRY A; 4N9F 5; 3ZKJ B; 4UYI A; 5HYW B; 3DRX A; 4KG9 A; 4CA1 A; 5HZG C; 2F1Z A; 2GKW A; 2Q81 A; 4JGH C; 5BO4 C; 3HTM A; 1R29 A; 2P1M A; 3E4U A; 4ZOU A; 4BGC A; 4X3G A; 2A79 B; 4U77 A; 4I7B A; 1LDK D; 3C6P A; 1CA9 A; 2ASS A; 3I3N A; 1QSC A; 4AWJ B; 4BKT B; 4ZGC A; 2F1X A; 3KVT A; 4U2M A; 5DAF A; 1S1G A; 3M8V A; 2Z8H A; 2A25 A; 3HQI A; 3ZNG B; 3HQH A; 2I2R A; 3OGK A; 2IHC A; 2F1W A; 4BKS B; 1BUO A; 3L2O A; 4GJH A; 2F1Y A; 1NN7 A; 2P1N A; 1EOE A; 5A15 A; 4GWN A; 3ZRF B; 1K2F A; 1QDW A; 4I7D A; 2VKP A; 4W9F B; 3ZTD B; 3HSV A; 3WSO B; 2E32 B; 4EOZ A; 4GWM A; 4CXI A; 3M4T A; 2VPK A; 4W9H H; 2XXN A; 3FKC A; 4U2N A; 5IBK A; 2NZ0 B; 3HVE B; 1D01 A; 3LNM B; 1NEX A; 4W9L B; 1EOF A; 4YY8 A; 4W9G B; 4HXI A; 2AN6 A; 3M52 A; 1LQB B; 1CA4 A; 1QDV A; 2IZV C; 3IVV A; 1KZZ A; 4W9I B; 4AP2 A; 3MQS C; 3HQL A; 4W9H B; 2MA9 C; 1F3V B; 5DAD A; 5A6R A; 2P1P A; 4APF A; 5BXD A; 4WQO C; 3V7D A; 2P1Q A; 3LBZ A; 2FOJ A; 3OGM A; 4W9J B; 3OHV A; 3OHU A; 4W9D B; 5E1T A; 3ZJB A; 2OVQ A; 3M5B A; 5EUP A; 2PPI A; 1CZZ A; 2IF5 A; 4JTC B; 4CXT A; 1LB4 A; 2OVP A; 4AJY C; 3ZRC B; 3B84 A; 4JTA B; 1VCB B; 4Z8M A; 4JJQ A; 1T1D A; 1FQV B; 1YZE A; 3IVB A; 4GHU A; 4M4E A; 3HQM A; 3IVQ A; 2CR2 A; 4CXJ A; 1D00 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
