3HW4A

Crystal structure of avian influenza a virus in complex with tmp
Total Genus 64
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
64
sequence length
202
structure length
178
Chain Sequence
PLGSMEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVCFMYSDRFEIIEGRDRTMAWTVVNSICNTTGVEKPKFLPDLYDYKENRFIEIGVTRREVHTYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTLDEESRARIKTRLFTIRQEMASRGLWDSFRQSERGE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Polymerase acidic protein
publication title Nucleoside monophosphate complex structures of the endonuclease domain from the influenza virus polymerase PA subunit reveal the substrate binding site inside the catalytic center
pubmed doi rcsb
source organism Influenza a virus (a/goose/guangdong/1/96(h5n1))
total genus 64
structure length 178
sequence length 202
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2009-06-17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.91.90 Alpha Beta 3-Layer(aba) Sandwich Restriction Endonuclease Restriction Endonuclease 3hw4A00
4CGXA 5I13A 4AVGA 5JHTA 3HW5A 4YYLA 4ZQQA 4AWKA 5FDDA 4AVQA 5D42A 4E5GA 4CGSA 4AWGA 4ZI0A 4E5FA 5DEBA 5JHVA 4AWHA 4ZHZA 3EBJA 4E5JA 4E5LA 5CL0A 5EGAA 4AWMA 5D8UA 4E5EA 4CHCA 5FDGA 4NFZA 5DESA 4AWFA 3HW4A 5D2OA 5DBSA 4E5IA 4E5HA 4AVLA 3HW6A 5CCYA 5D9JA 3HW3A 5CZNA 5CGVA 5D4GA
chains in the Genus database with same CATH superfamily
5I13A 3MQ6A 3CAEA 5FDDA 1BHMA 4CGSA 4F0QA 2FQZA 1M0IA 3BM3A 3V1ZA 5DEBA 2FOKA 3A4KA 3WVIA 4OC8A 1VRRA 2BAMA 5DBSA 4E5HA 3HW6A 4R28A 1SDOA 4AVGA 4YYLA 1D2IA 4AVQA 4AWGA 2P14A 3DPGA 2GB7A 2EWFA 3V21A 4AWHA 3EBJA 3ODHA 1FOKA 4E5EA 5DESA 2XI5A 3HW3A 5CGVA 4CGXA 3WVPA 4ZQQA 3WVKA 5D42A 4E5GA 3DW9A 4E5FA 5JHVA 4F0PA 4E5LA 3DVOA 5CL0A 5EGAA 1BAMA 1ES8A 4AWMA 5D8UA 1DC1A 2P0JA 4CHCA 5FDGA 4NFZA 2PFJA 4AWFA 1CFRA 5D2OA 4E5IA 5CCYA 1FZRA 3N78A 3WVGA 5JHTA 3HW5A 4AWKA 4ZI0A 1DFMA 2XI7A 3MQYA 3BAMA 3N7BA 1KNVA 1M0DA 4ZHZA 4E5JA 2E52A 3V20A 3WVHA 3HW4A 4AVLA 5D9JA 1ESGA 5CZNA 5D4GA
chains in the Genus database with same CATH topology
5I13A 3MQ6A 3CAEA 5FDDA 1BHMA 4CGSA 4F0QA 2FQZA 1M0IA 3BM3A 3V1ZA 5DEBA 2FOKA 3A4KA 3WVIA 4OC8A 1VRRA 2BAMA 5DBSA 4E5HA 3HW6A 4R28A 1SDOA 4AVGA 4YYLA 1D2IA 4AVQA 4AWGA 2P14A 3DPGA 2GB7A 2EWFA 3V21A 4AWHA 3EBJA 3ODHA 1FOKA 4E5EA 5DESA 2XI5A 3HW3A 5CGVA 4CGXA 3WVPA 4ZQQA 3WVKA 5D42A 4E5GA 3DW9A 4E5FA 5JHVA 4F0PA 4E5LA 3DVOA 5CL0A 5EGAA 1BAMA 1ES8A 4AWMA 5D8UA 1DC1A 2P0JA 4CHCA 5FDGA 4NFZA 2PFJA 4AWFA 1CFRA 5D2OA 4E5IA 5CCYA 1FZRA 3N78A 3WVGA 5JHTA 3HW5A 4AWKA 4ZI0A 1DFMA 2XI7A 3MQYA 3BAMA 3N7BA 1KNVA 1M0DA 4ZHZA 4E5JA 2E52A 3V20A 3WVHA 3HW4A 4AVLA 5D9JA 1ESGA 5CZNA 5D4GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4CGX A;  5I13 A;  4AVG A;  5JHT A;  3HW5 A;  4YYL A;  4ZQQ A;  4AWK A;  5FDD A;  4AVQ A;  5D42 A;  4E5G A;  4CGS A;  4AWG A;  4ZI0 A;  4E5F A;  5DEB A;  5JHV A;  4AWH A;  4ZHZ A;  3EBJ A;  4E5J A;  4E5L A;  5CL0 A;  5EGA A;  4AWM A;  5D8U A;  4E5E A;  4CHC A;  5FDG A;  4NFZ A;  5DES A;  4AWF A;  3HW4 A;  5D2O A;  5DBS A;  4E5I A;  4E5H A;  4AVL A;  3HW6 A;  5CCY A;  5D9J A;  3HW3 A;  5CZN A;  5CGV A;  5D4G A; 
#chains in the Genus database with same CATH topology
 5I13 A;  3MQ6 A;  3CAE A;  5FDD A;  1BHM A;  4CGS A;  4F0Q A;  2FQZ A;  1M0I A;  3BM3 A;  3V1Z A;  5DEB A;  2FOK A;  3A4K A;  3WVI A;  4OC8 A;  1VRR A;  2BAM A;  5DBS A;  4E5H A;  3HW6 A;  4R28 A;  1SDO A;  4AVG A;  4YYL A;  1D2I A;  4AVQ A;  4AWG A;  2P14 A;  3DPG A;  2GB7 A;  2EWF A;  3V21 A;  4AWH A;  3EBJ A;  3ODH A;  1FOK A;  4E5E A;  5DES A;  2XI5 A;  3HW3 A;  5CGV A;  4CGX A;  3WVP A;  4ZQQ A;  3WVK A;  5D42 A;  4E5G A;  3DW9 A;  4E5F A;  5JHV A;  4F0P A;  4E5L A;  3DVO A;  5CL0 A;  5EGA A;  1BAM A;  1ES8 A;  4AWM A;  5D8U A;  1DC1 A;  2P0J A;  4CHC A;  5FDG A;  4NFZ A;  2PFJ A;  4AWF A;  1CFR A;  5D2O A;  4E5I A;  5CCY A;  1FZR A;  3N78 A;  3WVG A;  5JHT A;  3HW5 A;  4AWK A;  4ZI0 A;  1DFM A;  2XI7 A;  3MQY A;  3BAM A;  3N7B A;  1KNV A;  1M0D A;  4ZHZ A;  4E5J A;  2E52 A;  3V20 A;  3WVH A;  3HW4 A;  4AVL A;  5D9J A;  1ESG A;  5CZN A;  5D4G A; 
#chains in the Genus database with same CATH homology
 5I13 A;  3MQ6 A;  3CAE A;  5FDD A;  1BHM A;  4CGS A;  4F0Q A;  2FQZ A;  1M0I A;  3BM3 A;  3V1Z A;  5DEB A;  2FOK A;  3A4K A;  3WVI A;  4OC8 A;  1VRR A;  2BAM A;  5DBS A;  4E5H A;  3HW6 A;  4R28 A;  1SDO A;  4AVG A;  4YYL A;  1D2I A;  4AVQ A;  4AWG A;  2P14 A;  3DPG A;  2GB7 A;  2EWF A;  3V21 A;  4AWH A;  3EBJ A;  3ODH A;  1FOK A;  4E5E A;  5DES A;  2XI5 A;  3HW3 A;  5CGV A;  4CGX A;  3WVP A;  4ZQQ A;  3WVK A;  5D42 A;  4E5G A;  3DW9 A;  4E5F A;  5JHV A;  4F0P A;  4E5L A;  3DVO A;  5CL0 A;  5EGA A;  1BAM A;  1ES8 A;  4AWM A;  5D8U A;  1DC1 A;  2P0J A;  4CHC A;  5FDG A;  4NFZ A;  2PFJ A;  4AWF A;  1CFR A;  5D2O A;  4E5I A;  5CCY A;  1FZR A;  3N78 A;  3WVG A;  5JHT A;  3HW5 A;  4AWK A;  4ZI0 A;  1DFM A;  2XI7 A;  3MQY A;  3BAM A;  3N7B A;  1KNV A;  1M0D A;  4ZHZ A;  4E5J A;  2E52 A;  3V20 A;  3WVH A;  3HW4 A;  4AVL A;  5D9J A;  1ESG A;  5CZN A;  5D4G A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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