3HW5A

Crystal structure of avian influenza virus pa_n in complex with amp
Total Genus 65
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
65
sequence length
202
structure length
177
Chain Sequence
PLGSMEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVCFMYSRFEIIEGRDRTMAWTVVNSICNTTGVEKPKFLPDLYDYKENRFIEIGVTRREVHTYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTLDEESRARIKTRLFTIRQEMASRGLWDSFRQSERGE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Polymerase acidic protein
publication title Nucleoside monophosphate complex structures of the endonuclease domain from the influenza virus polymerase PA subunit reveal the substrate binding site inside the catalytic center
pubmed doi rcsb
source organism Influenza a virus (a/goose/guangdong/1/96(h5n1))
total genus 65
structure length 177
sequence length 202
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2009-06-17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.91.90 Alpha Beta 3-Layer(aba) Sandwich Restriction Endonuclease Restriction Endonuclease 3hw5A00
4AWKA 4E5LA 5EGAA 5FDGA 3HW6A 5DEBA 4CGSA 5JHTA 5D4GA 5CCYA 5CL0A 5D9JA 4ZQQA 4AVGA 5CGVA 4E5HA 4AWGA 5DBSA 4AVQA 4AVLA 3EBJA 4AWFA 4ZI0A 5JHVA 4NFZA 4E5EA 4E5FA 5FDDA 4E5JA 4E5IA 4CHCA 5D8UA 5CZNA 4YYLA 4AWMA 4ZHZA 5D42A 4E5GA 5D2OA 3HW5A 4AWHA 3HW4A 4CGXA 5I13A 3HW3A 5DESA
chains in the Genus database with same CATH superfamily
4E5LA 5EGAA 4F0PA 5DEBA 2P14A 4ZQQA 3V20A 4AVQA 3ODHA 3MQYA 5JHVA 4E5EA 1ESGA 1SDOA 4CHCA 5CZNA 3WVHA 3DW9A 4AWHA 2EWFA 3CAEA 2GB7A 3HW4A 3WVPA 1ES8A 4CGSA 5JHTA 3DPGA 5CCYA 5CL0A 3BM3A 4AVGA 2E52A 3MQ6A 4AVLA 2FOKA 4AWFA 3V1ZA 3V21A 1D2IA 4E5JA 5D8UA 5D42A 4R28A 2FQZA 3WVKA 1FZRA 1M0IA 2XI7A 3WVGA 4E5GA 4AWKA 4AWGA 3A4KA 1M0DA 5DBSA 3EBJA 4F0QA 4NFZA 2XI5A 4E5FA 1DFMA 4YYLA 2P0JA 4AWMA 3WVIA 1DC1A 5D2OA 1BAMA 3HW5A 3DVOA 4CGXA 2BAMA 3HW3A 5FDGA 3HW6A 5D4GA 5D9JA 3N7BA 5CGVA 4E5HA 1CFRA 1KNVA 4ZI0A 5FDDA 4E5IA 1FOKA 1VRRA 4OC8A 4ZHZA 1BHMA 2PFJA 3N78A 5I13A 5DESA 3BAMA
chains in the Genus database with same CATH topology
4E5LA 5EGAA 4F0PA 5DEBA 2P14A 4ZQQA 3V20A 4AVQA 3ODHA 3MQYA 5JHVA 4E5EA 1ESGA 1SDOA 4CHCA 5CZNA 3WVHA 3DW9A 4AWHA 2EWFA 3CAEA 2GB7A 3HW4A 3WVPA 1ES8A 4CGSA 5JHTA 3DPGA 5CCYA 5CL0A 3BM3A 4AVGA 2E52A 3MQ6A 4AVLA 2FOKA 4AWFA 3V1ZA 3V21A 1D2IA 4E5JA 5D8UA 5D42A 4R28A 2FQZA 3WVKA 1FZRA 1M0IA 2XI7A 3WVGA 4E5GA 4AWKA 4AWGA 3A4KA 1M0DA 5DBSA 3EBJA 4F0QA 4NFZA 2XI5A 4E5FA 1DFMA 4YYLA 2P0JA 4AWMA 3WVIA 1DC1A 5D2OA 1BAMA 3HW5A 3DVOA 4CGXA 2BAMA 3HW3A 5FDGA 3HW6A 5D4GA 5D9JA 3N7BA 5CGVA 4E5HA 1CFRA 1KNVA 4ZI0A 5FDDA 4E5IA 1FOKA 1VRRA 4OC8A 4ZHZA 1BHMA 2PFJA 3N78A 5I13A 5DESA 3BAMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AWK A;  4E5L A;  5EGA A;  5FDG A;  3HW6 A;  5DEB A;  4CGS A;  5JHT A;  5D4G A;  5CCY A;  5CL0 A;  5D9J A;  4ZQQ A;  4AVG A;  5CGV A;  4E5H A;  4AWG A;  5DBS A;  4AVQ A;  4AVL A;  3EBJ A;  4AWF A;  4ZI0 A;  5JHV A;  4NFZ A;  4E5E A;  4E5F A;  5FDD A;  4E5J A;  4E5I A;  4CHC A;  5D8U A;  5CZN A;  4YYL A;  4AWM A;  4ZHZ A;  5D42 A;  4E5G A;  5D2O A;  3HW5 A;  4AWH A;  3HW4 A;  4CGX A;  5I13 A;  3HW3 A;  5DES A; 
#chains in the Genus database with same CATH topology
 4E5L A;  5EGA A;  4F0P A;  5DEB A;  2P14 A;  4ZQQ A;  3V20 A;  4AVQ A;  3ODH A;  3MQY A;  5JHV A;  4E5E A;  1ESG A;  1SDO A;  4CHC A;  5CZN A;  3WVH A;  3DW9 A;  4AWH A;  2EWF A;  3CAE A;  2GB7 A;  3HW4 A;  3WVP A;  1ES8 A;  4CGS A;  5JHT A;  3DPG A;  5CCY A;  5CL0 A;  3BM3 A;  4AVG A;  2E52 A;  3MQ6 A;  4AVL A;  2FOK A;  4AWF A;  3V1Z A;  3V21 A;  1D2I A;  4E5J A;  5D8U A;  5D42 A;  4R28 A;  2FQZ A;  3WVK A;  1FZR A;  1M0I A;  2XI7 A;  3WVG A;  4E5G A;  4AWK A;  4AWG A;  3A4K A;  1M0D A;  5DBS A;  3EBJ A;  4F0Q A;  4NFZ A;  2XI5 A;  4E5F A;  1DFM A;  4YYL A;  2P0J A;  4AWM A;  3WVI A;  1DC1 A;  5D2O A;  1BAM A;  3HW5 A;  3DVO A;  4CGX A;  2BAM A;  3HW3 A;  5FDG A;  3HW6 A;  5D4G A;  5D9J A;  3N7B A;  5CGV A;  4E5H A;  1CFR A;  1KNV A;  4ZI0 A;  5FDD A;  4E5I A;  1FOK A;  1VRR A;  4OC8 A;  4ZHZ A;  1BHM A;  2PFJ A;  3N78 A;  5I13 A;  5DES A;  3BAM A; 
#chains in the Genus database with same CATH homology
 4E5L A;  5EGA A;  4F0P A;  5DEB A;  2P14 A;  4ZQQ A;  3V20 A;  4AVQ A;  3ODH A;  3MQY A;  5JHV A;  4E5E A;  1ESG A;  1SDO A;  4CHC A;  5CZN A;  3WVH A;  3DW9 A;  4AWH A;  2EWF A;  3CAE A;  2GB7 A;  3HW4 A;  3WVP A;  1ES8 A;  4CGS A;  5JHT A;  3DPG A;  5CCY A;  5CL0 A;  3BM3 A;  4AVG A;  2E52 A;  3MQ6 A;  4AVL A;  2FOK A;  4AWF A;  3V1Z A;  3V21 A;  1D2I A;  4E5J A;  5D8U A;  5D42 A;  4R28 A;  2FQZ A;  3WVK A;  1FZR A;  1M0I A;  2XI7 A;  3WVG A;  4E5G A;  4AWK A;  4AWG A;  3A4K A;  1M0D A;  5DBS A;  3EBJ A;  4F0Q A;  4NFZ A;  2XI5 A;  4E5F A;  1DFM A;  4YYL A;  2P0J A;  4AWM A;  3WVI A;  1DC1 A;  5D2O A;  1BAM A;  3HW5 A;  3DVO A;  4CGX A;  2BAM A;  3HW3 A;  5FDG A;  3HW6 A;  5D4G A;  5D9J A;  3N7B A;  5CGV A;  4E5H A;  1CFR A;  1KNV A;  4ZI0 A;  5FDD A;  4E5I A;  1FOK A;  1VRR A;  4OC8 A;  4ZHZ A;  1BHM A;  2PFJ A;  3N78 A;  5I13 A;  5DES A;  3BAM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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