The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
91
|
sequence length |
250
|
structure length |
250
|
Chain Sequence |
b'ETREEAVRELQEMVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDLSGFYQEIDENILPSDFGGTLPKYDGKAVAEQLF'
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule keywords |
Retinaldehyde-binding protein 1
|
| publication title |
Bothnia dystrophy is caused by domino-like rearrangements in cellular retinaldehyde-binding protein mutant R234W.
pubmed doi rcsb |
| source organism |
Homo sapiens
|
| molecule tags |
Transport protein
|
| total genus |
91
|
| structure length |
250
|
| sequence length |
250
|
| ec nomenclature | |
| pdb deposition date | 2009-06-19 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00650 | CRAL_TRIO | CRAL/TRIO domain |
| A | PF03765 | CRAL_TRIO_N | CRAL/TRIO, N-terminal domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Helicase, Ruva Protein; domain 3 | N-terminal domain of phosphatidylinositol transfer protein sec14p | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Phosphatidylinositol Transfer Protein Sec14p | CRAL-TRIO lipid binding domain |
#chains in the Genus database with same CATH superfamily 4CIZ A; 1OIZ A; 3Q8G A; 2E2X A; 3PG7 A; 4J7Q A; 3B74 A; 2D4Q A; 3W68 A; 3P7Z A; 4TLG A; 4CJ6 A; 1O6U A; 3HY5 A; 4UYB A; 3PEG A; 3W67 A; 1OLM E; 3B7N A; 1OIP A; 3B7Z A; 4OMK A; 3HX3 A; 1R5L A; 3B7Q A; 1OLM A; 4M8Z A; 4OMJ A; 1AUA A; 4FMM A; 4J7P A; #chains in the Genus database with same CATH topology 1I4W A; 1N32 M; 1ORY B; 2LHC A; 3GO8 A; 1XMQ M; 1NHW C; 3R9X B; 1NY6 A; 4WP2 A; 3HZJ A; 1HJP A; 4GC9 A; 3FTC A; 2GNO A; 3TWK A; 3L27 A; 3HGI A; 1PJS A; 3GLH B; 3GQ3 A; 4LF7 M; 3A42 A; 1JR3 A; 1NJF A; 4MGZ E; 1TGU A; 1Z59 A; 3HY5 A; 4QNM A; 3E21 A; 2YR0 A; 1OJL A; 3FUT A; 4JI8 M; 2JZ0 A; 2Y21 A; 3R8F A; 2J5Y A; 4EIW A; 5C1B A; 3U6Q A; 2D7H A; 4GH9 A; 3LMM A; 3AOE A; 4YHH M; 5ITX E; 2VF7 A; 3KOZ E; 4B08 A; 4NXN M; 2DHY A; 4DR4 M; 3HU3 A; 1J7K A; 1MN3 A; 4DV1 M; 3KVW A; 5KO3 A; 2R6F A; 2CV2 A; 4J7P A; 4M0W A; 5C18 A; 3M0E A; 3U5Z B; 1OFH A; 4AKH A; 1QDT A; 2MH8 A; 3I4Y A; 3UJN A; 3T15 A; 3GRU A; 3K92 A; 4R7G A; 3W68 A; 2C9C A; 1SXJ D; 2G5G X; 3FRI A; 1XMO M; 2CWB A; 4PD2 A; 4AG6 A; 4CJ6 A; 2Y0Q A; 1XXH E; 4DR7 M; 3GLG B; 2QPA A; 5EP1 A; 1V34 A; 2WSC F; 3MMP A; 4DR2 M; 4KOD A; 2W82 A; 3W67 A; 4JI4 M; 4G4O A; 3U61 A; 3RGS A; 1SXJ C; 1IBM M; 2CE7 A; 4JV5 M; 3LVV A; 4Z8X A; 3DZD A; 1OAI A; 1OFI A; 3T1H M; 4Z6Y A; 3SAU A; 4DR6 M; 1QAO A; 4REZ A; 4IBJ A; 1HT2 E; 3IHP A; 3UMM A; 3DA1 A; 4FMM A; 3HU2 A; 2XF3 A; 2KDL A; 3BOS A; 3KXE C; 4LJ6 A; 3TPZ A; 2KHH A; 2QHO B; 1IM2 A; 4ZPX A; 2LVO C; 1E9S A; 1EFU B; 2EUC A; 2LXE A; 2Z4S A; 3LVW A; 4FW9 A; 3H4J A; 4X66 M; 3GPP A; 2DAM A; 1IBK M; 3AL0 C; 1K3X A; 3A45 A; 3A98 B; 4LF6 M; 2L7H A; 3GLF B; 1IFY A; 2Z8Y M; 2DWM A; 1OLM E; 3QYE A; 4KHP M; 4L6V 6; 1QAQ A; 2K47 A; 5EXP A; 1XC8 A; 2MR9 A; 4QOS A; 1DGG A; 1WJ7 A; 4LJ4 A; 3TL4 X; 1ZAE A; 3JAM S; 4JI2 M; 3GRV A; 5FSW A; 1WIV A; 1CUK A; 1N77 A; 3DFZ A; 1QUT A; 5DYI A; 2K0B X; 2EJS A; 1VQ1 A; 2XEP A; 4LF5 M; 1OLM A; 4B7H A; 3KFU G; 3GPU A; 1ZMU A; 1GAB A; 3GQ5 A; 1WXQ A; 3TQS A; 4AKI A; 3E9S A; 4LG2 A; 4B3S M; 2LVP C; 2DKL A; 2KEB A; 4XBO A; 4BB9 A; 4RF1 A; 4QOZ C; 2QNJ A; 3ZQJ A; 1R2Z A; 2F5N A; 2DXI A; 2XH9 A; 2H5X A; 3W0L B; 3CF6 E; 3U6M A; 3P7Z A; 2XSZ A; 2WSE F; 3M7G A; 4FWD A; 4MGH A; 1VDL A; 3FUX A; 4DUY M; 4RNA A; 2R0I A; 4DBG B; 4NRW A; 2N35 A; 2FFJ A; 2RGO A; 4NRV A; 3J80 S; 1OIP A; 4D80 A; 4NL4 H; 3U60 B; 7CAT A; 3SFZ A; 4IBK A; 2F5S A; 2R18 A; 1R6B X; 2M60 A; 1TH2 A; 2QCU A; 4M9S A; 4M8Z A; 2BJV A; 3KS8 A; 2O5R A; 1K3W A; 4MGI E; 2EA0 A; 3T38 A; 3FTE A; 2CFO A; 4F1I A; 5FLX S; 1A5T A; 1VEG A; 1C7Y A; 3FTF A; 3I04 M; 4MM3 B; 3DOA A; 2L4E A; 1NJG A; 3RE8 A; 2RRU A; 1OKS A; 2C9O A; 3GLH A; 1IY0 A; 1Z5C A; 4ANR A; 2CHV A; 4FWH A; 4RF0 A; 3I01 M; 2R4E A; 2UXB M; 3VK7 A; 2XLJ A; 1G8P A; 4JN6 A; 3ZC7 B; 2F5Q A; 5FTJ A; 1R4G A; 3L29 A; 4AG5 A; 1DGH A; 5KPZ A; 1KFV A; 1GL7 A; 4M0D A; 4OVZ B; 1G3I A; 3FUW A; 3KOW E; 2YFQ A; 3KOX E; 3EIE A; 2WSF F; 1QAN A; 1XNQ M; 2LTU A; 1JR3 D; 4BBA A; 1Z5B A; 4R3D A; 2FNA A; 1XXH B; 1NO1 A; 3U5Z A; 1NHG C; 3FUV A; 5EQT A; 4LJ9 A; 4WW0 A; 1V33 A; 4DV6 M; 1L1T A; 3T1Y M; 4LJ7 A; 3RFW A; 3Q8G A; 3LQR A; 4ITQ A; 2F5P A; 2V6Z M; 2QSF X; 5IWA M; 3GLG A; 4IBC A; 3AOE C; 3B9P A; 4YY3 M; 5BPV A; 4JXJ A; 1HNX M; 3C9P A; 4UYB A; 2ZTC A; 3HWS A; 2ZAM A; 4L4U A; 2KW0 A; 4DV0 M; 4AZF A; 5IT9 S; 2UU9 M; 2DWZ B; 4NSO B; 3CTW B; 1SXJ E; 1HQC A; 1DGH B; 4G6Z A; 1VDD A; 2LHG A; 2MJ5 B; 1G59 A; 4X65 M; 2V1U A; 3I4V A; 4NC6 A; 3SAW A; 2QBY B; 4QNR A; 1N36 M; 3HHY A; 3I51 A; 3CGW A; 3U6L A; 2FH0 A; 1G4A E; 4GHL A; 4LJ8 A; 4XK8 F; 4KLN A; 3TE6 A; 1XNR M; 2R65 A; 1GKI A; 4HLQ A; 4Y28 F; 4OU7 A; 3GLF A; 1DGF A; 4J7Q A; 2BNK A; 2ERC A; 4LRT A; 2ZM6 M; 1C1K A; 3FYC A; 1D0L A; 4IJE A; 4PCZ A; 4TLG A; 1IY1 A; 2HCB A; 5KQ8 A; 4G4Q A; 5BR8 M; 5KPR A; 4LF9 M; 2E5L M; 4WUR A; 3B7Z A; 1V92 A; 2VF8 A; 3HHW A; 3HJQ A; 3HX3 A; 1BVS A; 4D81 A; 4NSR A; 1FNN A; 5IZ7 D; 1D0K A; 1UFZ A; 4KO8 A; 4B7F A; 1Q02 A; 4X64 M; 4OW0 A; 3SAV A; 1E94 E; 1E9R A; 3OTO M; 4CIS A; 4TUW A; 5E6J A; 4GKJ M; 4LF8 M; 1L2C A; 4AQY M; 5EXT A; 4G3O A; 5E26 A; 1YLA A; 4MGY E; 1G41 A; 3NWL A; 2CV0 A; 2OOA A; 1MJG M; 5F3W A; 4R71 A; 1N33 M; 2Z7J A; 4FCW A; 3PXG A; 4B3M M; 3C3E A; 4FVM A; 3U60 A; 3QYB A; 2KRK A; 3HU1 A; 3JR5 A; 1IN5 A; 2QQ8 A; 4IBF A; 1JB0 F; 1YSY A; 3Q8X A; 5ITT A; 3L26 A; 2X49 A; 3K9O A; 1R5L A; 2XSZ D; 1XHB A; 2DVW B; 4LJA A; 4IBB A; 2LVQ D; 1S3S A; 2QEN A; 2I7N A; 2CP8 A; 2LBC A; 1AUA A; 1NV8 A; 5IRE B; 5ITX A; 4DUZ M; 2L09 A; 1QVR A; 3LCV B; 2JP7 A; 1NNU C; 1DV0 A; 4P17 A; 4AI6 A; 1OIZ A; 4IIW A; 2E2X A; 1PRB A; 3K1J A; 1P3Q Q; 1D0M A; 4DV7 M; 2MRO B; 5ITY A; 3FUU A; 2GQF A; 2LWX A; 3FTD A; 4I8O A; 3V76 A; 4OVZ A; 2FOI C; 1PJQ A; 2EKK A; 3KSX A; 3AKZ A; 3GQ4 A; 3GLI E; 2C5R A; 2NQ8 C; 3VKG A; 3EIH A; 1HQY E; 3L28 A; 2DAK A; 2FE8 A; 3SAR A; 5ITR A; 2JY7 A; 2LVA A; 4OMK A; 1XXH A; 4DV5 M; 1J5E M; 2UUA M; 5FTN A; 3U6O A; 5FTM A; 3T6P A; 4HEO A; 2EO2 A; 2HWJ A; 2I7P A; 1YE9 A; 2WZJ A; 4F2L A; 2G3Q A; 1TR8 A; 4GC5 A; 3NBX X; 2UXD M; 3SC3 A; 3GPX A; 3KP0 E; 3KDS E; 3CF0 A; 1PGY A; 3GPY A; 4BLC A; 4MB7 A; 1SXJ B; 1K82 A; 1IN4 A; 1YUB A; 1JR3 E; 3HJS A; 4GIP A; 1OAO C; 1Q39 A; 1QDR A; 1VEK A; 3PNV A; 3QWL A; 2HL7 A; 1HNW M; 4DV2 M; 3TWM A; 2J7N A; 2L4F A; 2V1C A; 3VFD A; 5KPT A; 1XB2 B; 4RKU F; 5EP3 A; 4PDG A; 4GIT A; 3VLF B; 3AV0 A; 4PDI A; 2R45 A; 3L2A A; 5H37 D; 3KSJ A; 2DAI A; 1IN8 A; 1T6O A; 2BWE A; 2QBY A; 3KP1 E; 2K9D A; 1NNJ A; 8CAT A; 1F4I A; 3RGP A; 1IXR C; 2LVN C; 4LFB M; 3FRH A; 2OOB A; 2Y0T A; 1GO5 A; 3J2P B; 1ZV1 A; 3F92 A; 5DYG A; 4M9Z A; 2JUJ A; 3PG7 A; 1IN7 A; 1L8Q A; 3D8L A; 4L15 A; 3HHX A; 2QZ4 A; 3U6S A; 3B74 A; 4I5S A; 4B3R M; 4NOO B; 1IXZ A; 4Q7J A; 4LFC M; 2CRU A; 1XWI A; 2CUZ A; 4PT5 A; 1IY2 A; 2DI0 A; 3UK6 A; 3SAS A; 2D4Q A; 4MGK E; 3SAT A; 3B89 A; 1TDH A; 3HHZ A; 2XZF A; 3FE3 A; 1DO0 A; 4S12 A; 2OO9 A; 3AJI B; 4NXM M; 4QHT A; 3ZCB B; 2XFS A; 3J81 S; 3SMP A; 1TDZ A; 2R44 A; 2DNA A; 2UUC M; 2D7E A; 3PNY A; 2P5T A; 3J7A S; 4KT0 F; 2O25 A; 3QAU A; 3U6P A; 5DNY A; 2MGW A; 4LZZ A; 2XZU A; 1GJT A; 4XGI A; 2DHR A; 2KNA A; 2EKF A; 2K6B A; 3BXW A; 3U6C A; 5FTK A; 4FWG A; 4GRI A; 2Z4R A; 3KW6 A; 4CIZ A; 4DR5 M; 4JYA M; 2KNV A; 2UUB M; 2X8A A; 1H6U A; 1DO2 A; 1ZMW A; 5LMU M; 4P16 A; 5EXX A; 1NVM A; 2BJW A; 1IXS B; 1LV7 A; 2LNH C; 1FJG M; 1RU3 A; 2CEA A; 2M5Z A; 4UN2 B; 5EXS A; 1GVN A; 3GP1 A; 5LMN M; 3PEG A; 1X37 A; 2OPF A; 1Z5A A; 1ZQ9 A; 3AFH A; 3KS4 A; 2JWS A; 4I81 A; 4CGY B; 5KQD A; 2DWN A; 1L2D A; 4GKK M; 2APL A; 3CF2 A; 2YNM D; 1N78 A; 3VDU A; 4MH0 E; 3J27 B; 3IEC A; 2VDB B; 4B3T M; 1E32 A; 3W0F A; 4L78 A; 1SG9 A; 3GLI B; 3HKP A; 1T3T A; 2KA6 B; 3SMS A; 2G8L A; 1HT1 E; 2A5Y B; 4LFA M; 4L8R C; 3H4M A; 4X62 M; 2C99 A; 1GJS A; 1PM5 A; 3M6A A; 2DEN A; 2KZU A; 2X4A A; 3K2L A; 2CV1 A; 2O01 F; 5EP4 A; 4D82 A; 2HHH M; 2JY6 B; 4IBD A; 1R2Y A; 3LW5 F; 4IJF A; 4QHS A; 1O6U A; 3UZU A; 2JY8 A; 4M9X A; 2D7G A; 1W5S A; 3B7N A; 3SYL A; 4B7G A; 3VK8 A; 3L25 A; 3VKH A; 5EP2 A; 1R7R A; 2JA2 A; 1WGN A; 4I4L A; 2DAE A; 2L7I A; 3IG8 A; 3WHK A; 2F5O A; 2VQE M; 1GLN A; 1TF0 B; 2JNH A; 3GLH E; 5ITU A; 2ZAN A; 4DV3 M; 1SXJ A; 1MU5 A; 2L6O A; 2C98 A; 1I94 M; 1W5T A; 2R4J A; 3K9P A; 3MK6 A; 4LGM A; 3THG A; 1WHC A; 4JI3 M; 1GL6 A; 1Q3B A; 2R46 A; 2JY5 A; 4JI7 M; 3LCU A; 4LJ5 A; 2JXN A; 1NSF A; 4IBE A; 1WGL A; 1EIJ A; 4IBG A; 4GMQ A; 3JR4 A; 1LTM A; 3K8Z A; 3BBZ A; 3SHG B; 2R62 A; 3HJ8 A; 5L8R F; 1T43 A; 2CHQ A; 2C96 A; 4JI6 M; 2KRU A; 2ZBK B; 3GRY A; 5GKN A; 4DR3 M; 3U61 B; 1D2N A; 4OMJ A; 4LY6 A; 3C58 A; 2Q2E B; 3J7B A; 2ZAO A; 3A46 A; 1J09 A; 2B3T A; 3GLG E; 4II7 A; 1OQY A; 1N34 M; 2LH0 A; 1HR0 M; 4LGY A; 1HNZ M; 3C3D A; 3FKE A; 3VDP A; 2DAG A; 5JI2 E; 2JZ1 A; 4LRS A; 1L1Z A; 4K0K M; 1TH3 A; 1WR1 B; 4IBI A; 5ITQ A; 4DR1 M; 2OQ4 A; 3IG5 A; 4AW4 A; 2DZL A; 2AHM A; 3UGJ A; 2DZN B; 4JI5 M; 3PVS A; 5FTL A; 1Y8G A; 2YQZ A; 2XFT A; 1JQJ C; 1QZM A; 3MJ5 A; 4FD2 A; 4G4R A; 1MX0 A; 1Q3C A; 4DV4 M; 1IN6 A; 3E46 A; 1QQW A; 1QYR A; 5EJC A; 1IQP A; 1QAM A; 2F4V M; 4GHA A; 1L2B A; 3GRR A; 3FYD A; 1OTR A; 2UXC M; 1AIP C; 1NV9 A; 4G4N A; 2KZS A; 2H1R A; 1VG5 A; 3D8B A; 3SYK A; 1VEJ A; 3WHL A; 3GLF E; 2VQF M; 2HAK A; 4LZJ A; 3MHV C; 1Z6T A; 2VII A; 2L2D A; 2Y20 A; 3NBI A; 3U6D A; 2FS1 A; 1KSF X; 2QP9 X; 3SHF A; 1PJJ A; 1IXS A; 2BWB A; 1EE8 A; 3SBJ A; 5DFL A; 1N75 A; 5A2Q S; 1PJI A; 2KNZ A; 2DWL A; 1NY5 A; 4FCV A; 3E4R A; 1TH4 A; 4GEW A; 2RGH A; 4JI0 M; 4LF4 M; 1KYI A; 3AOG A; 4LCB A; 3ZH9 B; 1DGB A; 2RKO A; 4JI1 M; 4L16 A; 3U6E A; 4AKG A; 1PJT A; 1UM8 A; 3GLI A; 1QUS A; 2KXE A; 2XGN A; 4OX9 M; 4A3V B; 1ZMV A; 2ZTD A; 4CHT B; 3PFI A; 3B7Q A; 1IBL M; 4FCT A; 4HL4 A; 1TTE A; 3ILK A; 5JI3 E; 2HKJ A; 3FD9 A; 4W5W A; 2J7O A; 1G71 A; 2Z3X A; 2DZO B; 3LQQ A; 3KOY E; 1QZE A; 2CHG A; 3TWL A; #chains in the Genus database with same CATH homology 4CIZ A; 1OIZ A; 3Q8G A; 2E2X A; 3PG7 A; 4J7Q A; 3B74 A; 2D4Q A; 3W68 A; 3P7Z A; 4TLG A; 4CJ6 A; 1O6U A; 3HY5 A; 4UYB A; 3PEG A; 3W67 A; 1OLM E; 3B7N A; 1OIP A; 3B7Z A; 4OMK A; 3HX3 A; 1R5L A; 3B7Q A; 1OLM A; 4M8Z A; 4OMJ A; 1AUA A; 4FMM A; 4J7P A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
