3HYJA

Crystal structure of the n-terminal laglidadg domain of duf199/whia
Total Genus 53
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
53
sequence length
193
structure length
186
Chain Sequence
MVSLLRRTFSEEIKEELVNVPFGSREEVISELLGFIKARGDLDRHIVFSLHSFAASRRLLNLMKYLSKPVSEIIVEKSHRYIKITAEYSESFMVIEPFFDVALFVSFLRGLFLSGGSMTNPRYHYHLEINLFEEETLALTRKSLKDFFNINAGIIELRNTRKLYIKSIKDILVFLEAIGVQRKLEE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription regulator
molecule keywords Protein DUF199/WhiA
publication title The structure of a bacterial DUF199/WhiA protein: domestication of an invasive endonuclease.
pubmed doi rcsb
source organism Thermotoga maritima
total genus 53
structure length 186
sequence length 193
chains with identical sequence D
ec nomenclature
pdb deposition date 2009-06-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF10298 WhiA_N WhiA N-terminal LAGLIDADG-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 3hyjA00
4AADA 1EF0A 3UVFA 4UT0A 2VBOA 4LOXA 2EX5A 2VBNB 4UN8A 5A78A 1DFAA 4UNBA 2VS8A 5AKNA 1N3EA 5E63A 4AAGA 5E67A 4UN8G 3OORA 2VBOB 5A74A 5E5SA 1LWSA 1B24A 1LWTA 1AF5A 3E54A 5A0MA 2O7MA 5A0WA 4YISA 3FD2A 4UN9A 4AAFA 3C0WA 3MX9A 1DQ3A 4UNAA 2XE0A 5A0MB 4UN9G 1G9YA 3MIPA 1VDEA 4Z20A 3HYJA 2VBLA 4Z1XA 1UM2A 4AQXA 2DCHX 2XE0B 1BP7A 1T9IA 4D6NA 1JVAA 2VBLB 5AKMA 4D6OA 4AABA 2QOJZ 1N3FA 1M5XA 4EFJA 3MISA 2AB5A 4Z1ZA 3C0XA 5A77A 3R7PA 2I3QA 3MXAA 4YHXA 5AKFA 3HYIA 1U0DA 1T9JA 2VBJA 4LQ0A 3KO2A 2CW7A 2FLDA 4YITA 5A72A 4UNCA 2CW8A 4AQUA 2I3PA 3MXBA 4UN7A 1MOWA 1P8KZ 3QQYA 2VBJB 3EH8A 1R7MA 4UN7G 1U0CA 3OOLA 2VS7A 5AK9A 1G9ZA 3MXBB 2VBNA 5E5OA 4AAEA
chains in the Genus database with same CATH superfamily
4AADA 1EF0A 3UVFA 4UT0A 2VBOA 4LOXA 2EX5A 2VBNB 4UN8A 5A78A 1DFAA 4UNBA 2VS8A 5AKNA 1N3EA 5E63A 4AAGA 5E67A 4UN8G 3OORA 2VBOB 5A74A 5E5SA 1LWSA 1B24A 1LWTA 1AF5A 3E54A 5A0MA 2O7MA 5A0WA 4YISA 3FD2A 4UN9A 4AAFA 3C0WA 3MX9A 1DQ3A 4UNAA 2XE0A 5A0MB 4UN9G 1G9YA 3MIPA 1VDEA 4Z20A 3HYJA 2VBLA 4Z1XA 1UM2A 4AQXA 2F4LA 2DCHX 2XE0B 1BP7A 1T9IA 4D6NA 1JVAA 2VBLB 5AKMA 4D6OA 4AABA 2QOJZ 1N3FA 1M5XA 4EFJA 3MISA 2AB5A 4Z1ZA 3C0XA 5A77A 3R7PA 2I3QA 3MXAA 4YHXA 5AKFA 3HYIA 1U0DA 1T9JA 2VBJA 4LQ0A 3KO2A 2CW7A 2FLDA 4YITA 5A72A 4UNCA 2CW8A 4KZSA 4AQUA 2I3PA 3MXBA 4UN7A 1MOWA 1P8KZ 3QQYA 2VBJB 3EH8A 1R7MA 4UN7G 1U0CA 3OOLA 2VS7A 5AK9A 1G9ZA 3MXBB 2VBNA 5E5OA 4AAEA
chains in the Genus database with same CATH topology
4AADA 1EF0A 3UVFA 4UT0A 2VBOA 4LOXA 2EX5A 2VBNB 4UN8A 5A78A 1DFAA 4UNBA 2VS8A 5AKNA 1N3EA 5E63A 4AAGA 5E67A 4UN8G 3OORA 2VBOB 5A74A 5E5SA 1LWSA 1B24A 1LWTA 1AF5A 3E54A 5A0MA 2O7MA 5A0WA 4YISA 3FD2A 4UN9A 4AAFA 3C0WA 3MX9A 1DQ3A 4UNAA 2XE0A 5A0MB 4UN9G 1G9YA 3MIPA 1VDEA 4Z20A 3HYJA 2VBLA 4Z1XA 1UM2A 4AQXA 2DCHX 2XE0B 1BP7A 1T9IA 4D6NA 1JVAA 2VBLB 5AKMA 4D6OA 4AABA 2QOJZ 1N3FA 1M5XA 4EFJA 3MISA 2AB5A 4Z1ZA 3C0XA 5A77A 3R7PA 2I3QA 3MXAA 4YHXA 5AKFA 3HYIA 1U0DA 1T9JA 2VBJA 4LQ0A 3KO2A 2CW7A 2FLDA 4YITA 5A72A 4UNCA 2CW8A 4AQUA 2I3PA 3MXBA 4UN7A 1MOWA 1P8KZ 3QQYA 2VBJB 3EH8A 1R7MA 4UN7G 1U0CA 3OOLA 2VS7A 5AK9A 1G9ZA 3MXBB 2VBNA 5E5OA 4AAEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AAD A;  1EF0 A;  3UVF A;  4UT0 A;  2VBO A;  4LOX A;  2EX5 A;  2VBN B;  4UN8 A;  5A78 A;  1DFA A;  4UNB A;  2VS8 A;  5AKN A;  1N3E A;  5E63 A;  4AAG A;  5E67 A;  4UN8 G;  3OOR A;  2VBO B;  5A74 A;  5E5S A;  1LWS A;  1B24 A;  1LWT A;  1AF5 A;  3E54 A;  5A0M A;  2O7M A;  5A0W A;  4YIS A;  3FD2 A;  4UN9 A;  4AAF A;  3C0W A;  3MX9 A;  1DQ3 A;  4UNA A;  2XE0 A;  5A0M B;  4UN9 G;  1G9Y A;  3MIP A;  1VDE A;  4Z20 A;  3HYJ A;  2VBL A;  4Z1X A;  1UM2 A;  4AQX A;  2DCH X;  2XE0 B;  1BP7 A;  1T9I A;  4D6N A;  1JVA A;  2VBL B;  5AKM A;  4D6O A;  4AAB A;  2QOJ Z;  1N3F A;  1M5X A;  4EFJ A;  3MIS A;  2AB5 A;  4Z1Z A;  3C0X A;  5A77 A;  3R7P A;  2I3Q A;  3MXA A;  4YHX A;  5AKF A;  3HYI A;  1U0D A;  1T9J A;  2VBJ A;  4LQ0 A;  3KO2 A;  2CW7 A;  2FLD A;  4YIT A;  5A72 A;  4UNC A;  2CW8 A;  4AQU A;  2I3P A;  3MXB A;  4UN7 A;  1MOW A;  1P8K Z;  3QQY A;  2VBJ B;  3EH8 A;  1R7M A;  4UN7 G;  1U0C A;  3OOL A;  2VS7 A;  5AK9 A;  1G9Z A;  3MXB B;  2VBN A;  5E5O A;  4AAE A; 
#chains in the Genus database with same CATH topology
 4AAD A;  1EF0 A;  3UVF A;  4UT0 A;  2VBO A;  4LOX A;  2EX5 A;  2VBN B;  4UN8 A;  5A78 A;  1DFA A;  4UNB A;  2VS8 A;  5AKN A;  1N3E A;  5E63 A;  4AAG A;  5E67 A;  4UN8 G;  3OOR A;  2VBO B;  5A74 A;  5E5S A;  1LWS A;  1B24 A;  1LWT A;  1AF5 A;  3E54 A;  5A0M A;  2O7M A;  5A0W A;  4YIS A;  3FD2 A;  4UN9 A;  4AAF A;  3C0W A;  3MX9 A;  1DQ3 A;  4UNA A;  2XE0 A;  5A0M B;  4UN9 G;  1G9Y A;  3MIP A;  1VDE A;  4Z20 A;  3HYJ A;  2VBL A;  4Z1X A;  1UM2 A;  4AQX A;  2F4L A;  2DCH X;  2XE0 B;  1BP7 A;  1T9I A;  4D6N A;  1JVA A;  2VBL B;  5AKM A;  4D6O A;  4AAB A;  2QOJ Z;  1N3F A;  1M5X A;  4EFJ A;  3MIS A;  2AB5 A;  4Z1Z A;  3C0X A;  5A77 A;  3R7P A;  2I3Q A;  3MXA A;  4YHX A;  5AKF A;  3HYI A;  1U0D A;  1T9J A;  2VBJ A;  4LQ0 A;  3KO2 A;  2CW7 A;  2FLD A;  4YIT A;  5A72 A;  4UNC A;  2CW8 A;  4KZS A;  4AQU A;  2I3P A;  3MXB A;  4UN7 A;  1MOW A;  1P8K Z;  3QQY A;  2VBJ B;  3EH8 A;  1R7M A;  4UN7 G;  1U0C A;  3OOL A;  2VS7 A;  5AK9 A;  1G9Z A;  3MXB B;  2VBN A;  5E5O A;  4AAE A; 
#chains in the Genus database with same CATH homology
 4AAD A;  1EF0 A;  3UVF A;  4UT0 A;  2VBO A;  4LOX A;  2EX5 A;  2VBN B;  4UN8 A;  5A78 A;  1DFA A;  4UNB A;  2VS8 A;  5AKN A;  1N3E A;  5E63 A;  4AAG A;  5E67 A;  4UN8 G;  3OOR A;  2VBO B;  5A74 A;  5E5S A;  1LWS A;  1B24 A;  1LWT A;  1AF5 A;  3E54 A;  5A0M A;  2O7M A;  5A0W A;  4YIS A;  3FD2 A;  4UN9 A;  4AAF A;  3C0W A;  3MX9 A;  1DQ3 A;  4UNA A;  2XE0 A;  5A0M B;  4UN9 G;  1G9Y A;  3MIP A;  1VDE A;  4Z20 A;  3HYJ A;  2VBL A;  4Z1X A;  1UM2 A;  4AQX A;  2DCH X;  2XE0 B;  1BP7 A;  1T9I A;  4D6N A;  1JVA A;  2VBL B;  5AKM A;  4D6O A;  4AAB A;  2QOJ Z;  1N3F A;  1M5X A;  4EFJ A;  3MIS A;  2AB5 A;  4Z1Z A;  3C0X A;  5A77 A;  3R7P A;  2I3Q A;  3MXA A;  4YHX A;  5AKF A;  3HYI A;  1U0D A;  1T9J A;  2VBJ A;  4LQ0 A;  3KO2 A;  2CW7 A;  2FLD A;  4YIT A;  5A72 A;  4UNC A;  2CW8 A;  4AQU A;  2I3P A;  3MXB A;  4UN7 A;  1MOW A;  1P8K Z;  3QQY A;  2VBJ B;  3EH8 A;  1R7M A;  4UN7 G;  1U0C A;  3OOL A;  2VS7 A;  5AK9 A;  1G9Z A;  3MXB B;  2VBN A;  5E5O A;  4AAE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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