3I24A

Crystal structure of a hit family hydrolase protein from vibrio fischeri. northeast structural genomics consortium target id vfr176
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
143
structure length
143
Chain Sequence
AFQLHPRLQQDCIVLGNLPLCKVLLIKEDIGPWLILVPRIEELKEIHHMTDEQQIQFIKESSAVAQLLEDNFSPDKINIGALGNLVPQLHIHHIARFTTDVAWPGPVWGNTTGVIRAQSSQTQLVDLLRDKLSNISGFKRLEH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords HIT family hydrolase
publication title Crystal Structure of a HIT family hydrolase protein from Vibrio fischeri. Northeast Structural Genomics Consortium target id VfR176
rcsb
source organism Vibrio fischeri es114
total genus 39
structure length 143
sequence length 143
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-06-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01230 HIT HIT domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.428.10 Alpha Beta 2-Layer Sandwich HIT family, subunit A HIT-like 3i24A00
3BL7A 1HXQA 2Q4HA 3OXKA 4RHNA 1GUPA 3ANOA 5IPCA 6FITA 3KSVA 3LB5A 3O1ZA 3L7XA 4NJYA 3TW2A 1KPAA 4EGUA 4NJXA 5I2FA 4FITA 4NDIA 1KPEA 1KPBA 1GUQA 5IPEA 2Q4LA 1FITA 3IMIA 6RHNA 1XMLA 2EO4A 1FHIA 4EQGA 4INIA 3QGZA 3SP4A 4INCA 3R6FA 1ST0A 1KPCA 1RZYA 4QDVA 3SPLA 3O0MA 3SZQA 3O1XA 5IPBA 4NJZA 3I24A 3OHEA 5FITA 5ED3A 4ZKVA 4ZGLA 5IPDA 3BLAA 5BV3A 1ZWJA 1ST4A 3I4SA 2FITA 4NDFA 3WO5A 4ZKLA 3FITA 5EMTA 1KPFA 4NDHA 2FHIA 3N1SA 3O1CA 3OMFA 3BL9A 4EQHA 4XBAA 5CS2A 1XMMA 5RHNA 4QDEA 1VLRA 1AV5A 4YKLB 3SPDA 2OIKA 5ED6A 3OJ7A 4QEBA 3RHNA 5IN3A 1EMSA 4NK0A 1Y23A 4EQEA 5I2EA 3NRDA 1Z84A 1HXPA 2H39A 3P0TA 4NDGA 3N1TA
chains in the Genus database with same CATH superfamily
3BL7A 1HXQA 2Q4HA 3OXKA 4RHNA 1GUPA 3ANOA 5IPCA 6FITA 3KSVA 3LB5A 3O1ZA 3L7XA 4NJYA 3TW2A 1KPAA 4EGUA 4NJXA 5I2FA 4FITA 4NDIA 1KPEA 1KPBA 1GUQA 5IPEA 2Q4LA 1FITA 2GU0A 3IMIA 6RHNA 1XMLA 2LJWA 2EO4A 1FHIA 4I5TA 4EQGA 4INIA 3QGZA 3SP4A 4INCA 3R6FA 1ST0A 1KPCA 1RZYA 4QDVA 3SPLA 3O0MA 3SZQA 3O1XA 2R7PA 5IPBA 4G0AA 4NJZA 3I24A 3OHEA 4G0JA 5FITA 5ED3A 4ZKVA 4ZGLA 5IPDA 3BLAA 2R7JA 5BV3A 1ZWJA 2POFA 1ST4A 1L9VA 3I4SA 2FITA 4NDFA 3WO5A 4ZKLA 3FITA 5EMTA 1KPFA 4NDHA 2FHIA 3N1SA 3O1CA 3OMFA 3BL9A 4EQHA 4XBAA 5CS2A 1XMMA 5RHNA 4QDEA 1VLRA 1AV5A 4YKLB 4I5WA 3SPDA 2OIKA 5ED6A 3OJ7A 4QEBA 3RHNA 5IN3A 2R8FA 1EMSA 4NK0A 1Y23A 4EQEA 5I2EA 4I5VA 3NRDA 1Z84A 1HXPA 2H39A 3P0TA 4NDGA 3N1TA 2R7CA
chains in the Genus database with same CATH topology
3BL7A 1HXQA 2Q4HA 3OXKA 4RHNA 1GUPA 3ANOA 5IPCA 6FITA 3KSVA 3LB5A 3O1ZA 3L7XA 4NJYA 3TW2A 1KPAA 4EGUA 4NJXA 5I2FA 4FITA 4NDIA 1KPEA 1KPBA 1GUQA 5IPEA 2Q4LA 1FITA 3IMIA 6RHNA 1XMLA 2EO4A 1FHIA 4EQGA 4INIA 3QGZA 3SP4A 4INCA 3R6FA 1ST0A 1KPCA 1RZYA 4QDVA 3SPLA 3O0MA 3SZQA 3O1XA 5IPBA 4NJZA 3I24A 3OHEA 5FITA 5ED3A 4ZKVA 4ZGLA 5IPDA 3BLAA 5BV3A 1ZWJA 1ST4A 3I4SA 2FITA 4NDFA 3WO5A 4ZKLA 3FITA 5EMTA 1KPFA 4NDHA 2FHIA 3N1SA 3O1CA 3OMFA 3BL9A 4EQHA 4XBAA 5CS2A 1XMMA 5RHNA 4QDEA 1VLRA 1AV5A 4YKLB 3SPDA 2OIKA 5ED6A 3OJ7A 4QEBA 3RHNA 5IN3A 1EMSA 4NK0A 1Y23A 4EQEA 5I2EA 3NRDA 1Z84A 1HXPA 2H39A 3P0TA 4NDGA 3N1TA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BL7 A;  1HXQ A;  2Q4H A;  3OXK A;  4RHN A;  1GUP A;  3ANO A;  5IPC A;  6FIT A;  3KSV A;  3LB5 A;  3O1Z A;  3L7X A;  4NJY A;  3TW2 A;  1KPA A;  4EGU A;  4NJX A;  5I2F A;  4FIT A;  4NDI A;  1KPE A;  1KPB A;  1GUQ A;  5IPE A;  2Q4L A;  1FIT A;  3IMI A;  6RHN A;  1XML A;  2EO4 A;  1FHI A;  4EQG A;  4INI A;  3QGZ A;  3SP4 A;  4INC A;  3R6F A;  1ST0 A;  1KPC A;  1RZY A;  4QDV A;  3SPL A;  3O0M A;  3SZQ A;  3O1X A;  5IPB A;  4NJZ A;  3I24 A;  3OHE A;  5FIT A;  5ED3 A;  4ZKV A;  4ZGL A;  5IPD A;  3BLA A;  5BV3 A;  1ZWJ A;  1ST4 A;  3I4S A;  2FIT A;  4NDF A;  3WO5 A;  4ZKL A;  3FIT A;  5EMT A;  1KPF A;  4NDH A;  2FHI A;  3N1S A;  3O1C A;  3OMF A;  3BL9 A;  4EQH A;  4XBA A;  5CS2 A;  1XMM A;  5RHN A;  4QDE A;  1VLR A;  1AV5 A;  4YKL B;  3SPD A;  2OIK A;  5ED6 A;  3OJ7 A;  4QEB A;  3RHN A;  5IN3 A;  1EMS A;  4NK0 A;  1Y23 A;  4EQE A;  5I2E A;  3NRD A;  1Z84 A;  1HXP A;  2H39 A;  3P0T A;  4NDG A;  3N1T A; 
#chains in the Genus database with same CATH topology
 3BL7 A;  1HXQ A;  2Q4H A;  3OXK A;  4RHN A;  1GUP A;  3ANO A;  5IPC A;  6FIT A;  3KSV A;  3LB5 A;  3O1Z A;  3L7X A;  4NJY A;  3TW2 A;  1KPA A;  4EGU A;  4NJX A;  5I2F A;  4FIT A;  4NDI A;  1KPE A;  1KPB A;  1GUQ A;  5IPE A;  2Q4L A;  1FIT A;  2GU0 A;  3IMI A;  6RHN A;  1XML A;  2LJW A;  2EO4 A;  1FHI A;  4I5T A;  4EQG A;  4INI A;  3QGZ A;  3SP4 A;  4INC A;  3R6F A;  1ST0 A;  1KPC A;  1RZY A;  4QDV A;  3SPL A;  3O0M A;  3SZQ A;  3O1X A;  2R7P A;  5IPB A;  4G0A A;  4NJZ A;  3I24 A;  3OHE A;  4G0J A;  5FIT A;  5ED3 A;  4ZKV A;  4ZGL A;  5IPD A;  3BLA A;  2R7J A;  5BV3 A;  1ZWJ A;  2POF A;  1ST4 A;  1L9V A;  3I4S A;  2FIT A;  4NDF A;  3WO5 A;  4ZKL A;  3FIT A;  5EMT A;  1KPF A;  4NDH A;  2FHI A;  3N1S A;  3O1C A;  3OMF A;  3BL9 A;  4EQH A;  4XBA A;  5CS2 A;  1XMM A;  5RHN A;  4QDE A;  1VLR A;  1AV5 A;  4YKL B;  4I5W A;  3SPD A;  2OIK A;  5ED6 A;  3OJ7 A;  4QEB A;  3RHN A;  5IN3 A;  2R8F A;  1EMS A;  4NK0 A;  1Y23 A;  4EQE A;  5I2E A;  4I5V A;  3NRD A;  1Z84 A;  1HXP A;  2H39 A;  3P0T A;  4NDG A;  3N1T A;  2R7C A; 
#chains in the Genus database with same CATH homology
 3BL7 A;  1HXQ A;  2Q4H A;  3OXK A;  4RHN A;  1GUP A;  3ANO A;  5IPC A;  6FIT A;  3KSV A;  3LB5 A;  3O1Z A;  3L7X A;  4NJY A;  3TW2 A;  1KPA A;  4EGU A;  4NJX A;  5I2F A;  4FIT A;  4NDI A;  1KPE A;  1KPB A;  1GUQ A;  5IPE A;  2Q4L A;  1FIT A;  3IMI A;  6RHN A;  1XML A;  2EO4 A;  1FHI A;  4EQG A;  4INI A;  3QGZ A;  3SP4 A;  4INC A;  3R6F A;  1ST0 A;  1KPC A;  1RZY A;  4QDV A;  3SPL A;  3O0M A;  3SZQ A;  3O1X A;  5IPB A;  4NJZ A;  3I24 A;  3OHE A;  5FIT A;  5ED3 A;  4ZKV A;  4ZGL A;  5IPD A;  3BLA A;  5BV3 A;  1ZWJ A;  1ST4 A;  3I4S A;  2FIT A;  4NDF A;  3WO5 A;  4ZKL A;  3FIT A;  5EMT A;  1KPF A;  4NDH A;  2FHI A;  3N1S A;  3O1C A;  3OMF A;  3BL9 A;  4EQH A;  4XBA A;  5CS2 A;  1XMM A;  5RHN A;  4QDE A;  1VLR A;  1AV5 A;  4YKL B;  3SPD A;  2OIK A;  5ED6 A;  3OJ7 A;  4QEB A;  3RHN A;  5IN3 A;  1EMS A;  4NK0 A;  1Y23 A;  4EQE A;  5I2E A;  3NRD A;  1Z84 A;  1HXP A;  2H39 A;  3P0T A;  4NDG A;  3N1T A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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