3I38A

Structure of a putative chaperone protein dnaj from klebsiella pneumoniae subsp. pneumoniae mgh 78578
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
103
structure length
103
Chain Sequence
HPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLVSKTHTGDLFAVIKIVMPTKPDEKARELWQQLAAAEASFDPRKTW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structure of a Putative Chaperone Protein Dnaj from Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
rcsb
molecule tags Chaperone
source organism Klebsiella pneumoniae subsp. pneumoniae mgh 78578
molecule keywords Putative chaperone DnaJ
total genus 21
structure length 103
sequence length 103
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L
ec nomenclature
pdb deposition date 2009-06-30
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.260.20 Mainly Beta Sandwich HSP40/DNAj peptide-binding domain Urease metallochaperone UreE, N-terminal domain 3i38A01
1GMVA 1EARA 3TJAA 1NLTA 1XAOA 2QLDA 3I38A 3TJ9A 4L3KA 1GMUA 3LA0A 3AGZA 3NXZA 1GMWD 1C3GA 1GMWA 4J80A 3TJ8A 3NY0A 3L9ZA 2B26A 2Q2GA 3AGYA 3LZ8A 1EB0A 3AGXA
chains in the Genus database with same CATH superfamily
1GMVA 1EARA 3TJAA 1NLTA 3C6EC 1XAOA 2QLDA 3I38A 3TJ9A 4L3KA 1GMUA 2JZ8A 3LA0A 3AGZA 3NXZA 2ODXA 1GMWD 1C3GA 1GMWA 3AKOB 4J80A 3TJ8A 2JVMA 3NY0A 3L9ZA 2B26A 2JRRA 2Q2GA 3AGYA 3LZ8A 1EB0A 3C5XC 3AGXA
chains in the Genus database with same CATH topology
1GMVA 1EARA 3TJAA 1NLTA 1XAOA 2QLDA 3I38A 3TJ9A 4L3KA 1GMUA 3LA0A 3AGZA 3NXZA 1GMWD 1C3GA 1GMWA 4J80A 3TJ8A 3NY0A 3L9ZA 2B26A 2Q2GA 3AGYA 3LZ8A 1EB0A 3AGXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GMV A;  1EAR A;  3TJA A;  1NLT A;  1XAO A;  2QLD A;  3I38 A;  3TJ9 A;  4L3K A;  1GMU A;  3LA0 A;  3AGZ A;  3NXZ A;  1GMW D;  1C3G A;  1GMW A;  4J80 A;  3TJ8 A;  3NY0 A;  3L9Z A;  2B26 A;  2Q2G A;  3AGY A;  3LZ8 A;  1EB0 A;  3AGX A; 
#chains in the Genus database with same CATH topology
 1GMV A;  1EAR A;  3TJA A;  1NLT A;  3C6E C;  1XAO A;  2QLD A;  3I38 A;  3TJ9 A;  4L3K A;  1GMU A;  2JZ8 A;  3LA0 A;  3AGZ A;  3NXZ A;  2ODX A;  1GMW D;  1C3G A;  1GMW A;  3AKO B;  4J80 A;  3TJ8 A;  2JVM A;  3NY0 A;  3L9Z A;  2B26 A;  2JRR A;  2Q2G A;  3AGY A;  3LZ8 A;  1EB0 A;  3C5X C;  3AGX A; 
#chains in the Genus database with same CATH homology
 1GMV A;  1EAR A;  3TJA A;  1NLT A;  1XAO A;  2QLD A;  3I38 A;  3TJ9 A;  4L3K A;  1GMU A;  3LA0 A;  3AGZ A;  3NXZ A;  1GMW D;  1C3G A;  1GMW A;  4J80 A;  3TJ8 A;  3NY0 A;  3L9Z A;  2B26 A;  2Q2G A;  3AGY A;  3LZ8 A;  1EB0 A;  3AGX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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