3I46A

Crystal structure of beta toxin from staphylococcus aureus f277a, p278a mutant with bound calcium ions
Total Genus 94
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
94
sequence length
289
structure length
289
Chain Sequence
DLKLVSHNVYMLSTVLYPNWGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNVKKEYPYQTPVLGRSQSGWDKTEGSYSSTVAEDGGVAIVSKYPIKEKIQHVFKSGCGFDNDSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDMLKNLNVNDVLYAGHNSTWDPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTEKPKPWDVYAAAYYYVYNDFSDHYPIKAYSK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Toxin
molecule keywords Beta-hemolysin
publication title Structure and biological functions of beta toxin from Staphylococcus aureus: Role of the hydrophobic beta hairpin in virulence
rcsb
source organism Staphylococcus aureus
total genus 94
structure length 289
sequence length 289
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-07-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03372 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.10.10 Alpha Beta 4-Layer Sandwich Deoxyribonuclease I; Chain A Endonuclease/exonuclease/phosphatase 3i46A00
4C1RA 3I48A 3NGQA 4QHDA 3G0RA 5J3PA 3G4TA 3G1KA 4GZ0A 1BIXA 3L1WA 3W2XA 1DNKA 4CMNA 4L1YA 3G3CA 1DE8A 2UYRX 2DNJA 4B5JA 4B5FA 3N9VA 3G2DA 4LNDA 4B5IA 4L21A 1NTFA 5J3ZA 1VYBA 5INOA 3G3YA 4F1IA 4GEWA 5EWTA 3G91A 3W2YA 3WCXA 3G8VA 5J3SA 3G0AA 4PUQA 3G2CA 5INKA 1ZWXA 5J42A 4IEMA 3DNIA 5CFGA 5CFEA 4FVAA 1HD7A 5INMA 4L20A 1ATND 3I46A 3GA6A 2O3CA 2A40B 1DEWA 2ISIA 5DFJA 3TEBA 4F1HB 1YJHA 4QH9A 4FPVA 2EI9A 2F1NA 2V0SA 2J63A 5INPA 4B5GA 3NR8A 4GYZA 4A9CA 4AWNA 2DDTA 4F1RA 2JC4A 4B5HA 5INNA 3I41A 2VOAA 3G00A 2O3HA 2V0RA 2A41B 4GZ1A 3MPRA 5HT2A 5DG0A 4L1ZA 2XSWA 5DV2A 2DDRA 4GZ2A 4B5MA 1SI6X 5DFHA 5A7JA 1SR4B 4K6LF 5INLA 3NGNA 4F1HA 2F2FB 2A42B 4CMLA 1E9NA 5INQA 1Y21A 2DDSA 2JC5A 3G6SA 1AKOA 2A3ZB 1I9ZA 5J8NA 3G38A 2D1KB 3FZIA 3I5VA 3U8UA 3NGOA 5DV4A 5DFFA 3CJCD 4QHEA 5DFIA 1WDUA 3K55A 1I9YA 4JG3A 3W3DB 5A7IA 2IMQX 1DE9A 4RUWA 3MTCA
chains in the Genus database with same CATH superfamily
4C1RA 3I48A 3NGQA 4QHDA 3G0RA 5J3PA 3G4TA 3G1KA 4GZ0A 1BIXA 3L1WA 3W2XA 1DNKA 4CMNA 4L1YA 3G3CA 1DE8A 2UYRX 2DNJA 4B5JA 4B5FA 3N9VA 3G2DA 4LNDA 4B5IA 4L21A 1NTFA 5J3ZA 1VYBA 5INOA 3G3YA 4F1IA 4GEWA 5EWTA 3G91A 3W2YA 3WCXA 3G8VA 5J3SA 3G0AA 4PUQA 3G2CA 5INKA 1ZWXA 5J42A 4IEMA 3DNIA 5CFGA 5CFEA 4FVAA 1HD7A 5INMA 4L20A 1ATND 3I46A 3GA6A 2O3CA 2A40B 1DEWA 2ISIA 5DFJA 3TEBA 4F1HB 1YJHA 4QH9A 4FPVA 2EI9A 2F1NA 2V0SA 2J63A 5INPA 4B5GA 3NR8A 4GYZA 4A9CA 4AWNA 2DDTA 4F1RA 2JC4A 4B5HA 5INNA 3I41A 2VOAA 3G00A 2O3HA 2V0RA 2A41B 4GZ1A 3MPRA 5HT2A 5DG0A 4L1ZA 2XSWA 5DV2A 2DDRA 4GZ2A 4B5MA 1SI6X 5DFHA 5A7JA 1SR4B 4K6LF 5INLA 3NGNA 4F1HA 2F2FB 2A42B 4CMLA 1E9NA 5INQA 1Y21A 2DDSA 2JC5A 3G6SA 1AKOA 2A3ZB 1I9ZA 5J8NA 3G38A 2D1KB 3FZIA 3I5VA 3U8UA 3NGOA 5DV4A 5DFFA 3CJCD 4QHEA 5DFIA 1WDUA 3K55A 1I9YA 4JG3A 3W3DB 5A7IA 2IMQX 1DE9A 4RUWA 3MTCA
chains in the Genus database with same CATH topology
4C1RA 3I48A 3NGQA 4QHDA 3G0RA 5J3PA 3G4TA 3G1KA 4GZ0A 1BIXA 3L1WA 3W2XA 1DNKA 4CMNA 4L1YA 3G3CA 1DE8A 2UYRX 2DNJA 4B5JA 4B5FA 3N9VA 3G2DA 4LNDA 4B5IA 4L21A 1NTFA 5J3ZA 1VYBA 5INOA 3G3YA 4F1IA 4GEWA 5EWTA 3G91A 3W2YA 3WCXA 3G8VA 5J3SA 3G0AA 4PUQA 3G2CA 5INKA 1ZWXA 5J42A 4IEMA 3DNIA 5CFGA 5CFEA 4FVAA 1HD7A 5INMA 4L20A 1ATND 3I46A 3GA6A 2O3CA 2A40B 1DEWA 2ISIA 5DFJA 3TEBA 4F1HB 1YJHA 4QH9A 4FPVA 2EI9A 2F1NA 2V0SA 2J63A 5INPA 4B5GA 3NR8A 4GYZA 4A9CA 4AWNA 2DDTA 4F1RA 2JC4A 4B5HA 5INNA 3I41A 2VOAA 3G00A 2O3HA 2V0RA 2A41B 4GZ1A 3MPRA 5HT2A 5DG0A 4L1ZA 2XSWA 5DV2A 2DDRA 4GZ2A 4B5MA 1SI6X 5DFHA 5A7JA 1SR4B 4K6LF 5INLA 3NGNA 4F1HA 2F2FB 2A42B 4CMLA 1E9NA 5INQA 1Y21A 2DDSA 2JC5A 3G6SA 1AKOA 2A3ZB 1I9ZA 5J8NA 3G38A 2D1KB 3FZIA 3I5VA 3U8UA 3NGOA 5DV4A 5DFFA 3CJCD 4QHEA 5DFIA 1WDUA 3K55A 1I9YA 4JG3A 3W3DB 5A7IA 2IMQX 1DE9A 4RUWA 3MTCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4C1R A;  3I48 A;  3NGQ A;  4QHD A;  3G0R A;  5J3P A;  3G4T A;  3G1K A;  4GZ0 A;  1BIX A;  3L1W A;  3W2X A;  1DNK A;  4CMN A;  4L1Y A;  3G3C A;  1DE8 A;  2UYR X;  2DNJ A;  4B5J A;  4B5F A;  3N9V A;  3G2D A;  4LND A;  4B5I A;  4L21 A;  1NTF A;  5J3Z A;  1VYB A;  5INO A;  3G3Y A;  4F1I A;  4GEW A;  5EWT A;  3G91 A;  3W2Y A;  3WCX A;  3G8V A;  5J3S A;  3G0A A;  4PUQ A;  3G2C A;  5INK A;  1ZWX A;  5J42 A;  4IEM A;  3DNI A;  5CFG A;  5CFE A;  4FVA A;  1HD7 A;  5INM A;  4L20 A;  1ATN D;  3I46 A;  3GA6 A;  2O3C A;  2A40 B;  1DEW A;  2ISI A;  5DFJ A;  3TEB A;  4F1H B;  1YJH A;  4QH9 A;  4FPV A;  2EI9 A;  2F1N A;  2V0S A;  2J63 A;  5INP A;  4B5G A;  3NR8 A;  4GYZ A;  4A9C A;  4AWN A;  2DDT A;  4F1R A;  2JC4 A;  4B5H A;  5INN A;  3I41 A;  2VOA A;  3G00 A;  2O3H A;  2V0R A;  2A41 B;  4GZ1 A;  3MPR A;  5HT2 A;  5DG0 A;  4L1Z A;  2XSW A;  5DV2 A;  2DDR A;  4GZ2 A;  4B5M A;  1SI6 X;  5DFH A;  5A7J A;  1SR4 B;  4K6L F;  5INL A;  3NGN A;  4F1H A;  2F2F B;  2A42 B;  4CML A;  1E9N A;  5INQ A;  1Y21 A;  2DDS A;  2JC5 A;  3G6S A;  1AKO A;  2A3Z B;  1I9Z A;  5J8N A;  3G38 A;  2D1K B;  3FZI A;  3I5V A;  3U8U A;  3NGO A;  5DV4 A;  5DFF A;  3CJC D;  4QHE A;  5DFI A;  1WDU A;  3K55 A;  1I9Y A;  4JG3 A;  3W3D B;  5A7I A;  2IMQ X;  1DE9 A;  4RUW A;  3MTC A; 
#chains in the Genus database with same CATH topology
 4C1R A;  3I48 A;  3NGQ A;  4QHD A;  3G0R A;  5J3P A;  3G4T A;  3G1K A;  4GZ0 A;  1BIX A;  3L1W A;  3W2X A;  1DNK A;  4CMN A;  4L1Y A;  3G3C A;  1DE8 A;  2UYR X;  2DNJ A;  4B5J A;  4B5F A;  3N9V A;  3G2D A;  4LND A;  4B5I A;  4L21 A;  1NTF A;  5J3Z A;  1VYB A;  5INO A;  3G3Y A;  4F1I A;  4GEW A;  5EWT A;  3G91 A;  3W2Y A;  3WCX A;  3G8V A;  5J3S A;  3G0A A;  4PUQ A;  3G2C A;  5INK A;  1ZWX A;  5J42 A;  4IEM A;  3DNI A;  5CFG A;  5CFE A;  4FVA A;  1HD7 A;  5INM A;  4L20 A;  1ATN D;  3I46 A;  3GA6 A;  2O3C A;  2A40 B;  1DEW A;  2ISI A;  5DFJ A;  3TEB A;  4F1H B;  1YJH A;  4QH9 A;  4FPV A;  2EI9 A;  2F1N A;  2V0S A;  2J63 A;  5INP A;  4B5G A;  3NR8 A;  4GYZ A;  4A9C A;  4AWN A;  2DDT A;  4F1R A;  2JC4 A;  4B5H A;  5INN A;  3I41 A;  2VOA A;  3G00 A;  2O3H A;  2V0R A;  2A41 B;  4GZ1 A;  3MPR A;  5HT2 A;  5DG0 A;  4L1Z A;  2XSW A;  5DV2 A;  2DDR A;  4GZ2 A;  4B5M A;  1SI6 X;  5DFH A;  5A7J A;  1SR4 B;  4K6L F;  5INL A;  3NGN A;  4F1H A;  2F2F B;  2A42 B;  4CML A;  1E9N A;  5INQ A;  1Y21 A;  2DDS A;  2JC5 A;  3G6S A;  1AKO A;  2A3Z B;  1I9Z A;  5J8N A;  3G38 A;  2D1K B;  3FZI A;  3I5V A;  3U8U A;  3NGO A;  5DV4 A;  5DFF A;  3CJC D;  4QHE A;  5DFI A;  1WDU A;  3K55 A;  1I9Y A;  4JG3 A;  3W3D B;  5A7I A;  2IMQ X;  1DE9 A;  4RUW A;  3MTC A; 
#chains in the Genus database with same CATH homology
 4C1R A;  3I48 A;  3NGQ A;  4QHD A;  3G0R A;  5J3P A;  3G4T A;  3G1K A;  4GZ0 A;  1BIX A;  3L1W A;  3W2X A;  1DNK A;  4CMN A;  4L1Y A;  3G3C A;  1DE8 A;  2UYR X;  2DNJ A;  4B5J A;  4B5F A;  3N9V A;  3G2D A;  4LND A;  4B5I A;  4L21 A;  1NTF A;  5J3Z A;  1VYB A;  5INO A;  3G3Y A;  4F1I A;  4GEW A;  5EWT A;  3G91 A;  3W2Y A;  3WCX A;  3G8V A;  5J3S A;  3G0A A;  4PUQ A;  3G2C A;  5INK A;  1ZWX A;  5J42 A;  4IEM A;  3DNI A;  5CFG A;  5CFE A;  4FVA A;  1HD7 A;  5INM A;  4L20 A;  1ATN D;  3I46 A;  3GA6 A;  2O3C A;  2A40 B;  1DEW A;  2ISI A;  5DFJ A;  3TEB A;  4F1H B;  1YJH A;  4QH9 A;  4FPV A;  2EI9 A;  2F1N A;  2V0S A;  2J63 A;  5INP A;  4B5G A;  3NR8 A;  4GYZ A;  4A9C A;  4AWN A;  2DDT A;  4F1R A;  2JC4 A;  4B5H A;  5INN A;  3I41 A;  2VOA A;  3G00 A;  2O3H A;  2V0R A;  2A41 B;  4GZ1 A;  3MPR A;  5HT2 A;  5DG0 A;  4L1Z A;  2XSW A;  5DV2 A;  2DDR A;  4GZ2 A;  4B5M A;  1SI6 X;  5DFH A;  5A7J A;  1SR4 B;  4K6L F;  5INL A;  3NGN A;  4F1H A;  2F2F B;  2A42 B;  4CML A;  1E9N A;  5INQ A;  1Y21 A;  2DDS A;  2JC5 A;  3G6S A;  1AKO A;  2A3Z B;  1I9Z A;  5J8N A;  3G38 A;  2D1K B;  3FZI A;  3I5V A;  3U8U A;  3NGO A;  5DV4 A;  5DFF A;  3CJC D;  4QHE A;  5DFI A;  1WDU A;  3K55 A;  1I9Y A;  4JG3 A;  3W3D B;  5A7I A;  2IMQ X;  1DE9 A;  4RUW A;  3MTC A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...