3I48A

Crystal structure of beta toxin from staphylococcus aureus f277a, p278a mutant with bound magnesium ions
Total Genus 99
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
99
sequence length
291
structure length
291
Chain Sequence
DTDLKLVSHNVYMLSTVLYPNWGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNVKKEYPYQTPVLGRSQSGWDKTEGSYSSTVAEDGGVAIVSKYPIKEKIQHVFKSGCGFDNDSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDMLKNLNVNDVLYAGHNSTWDPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTEKPKPWDVYAAAYYYVYNDFSDHYPIKAYSK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords Beta-hemolysin
publication title Structure and biological functions of beta toxin from Staphylococcus aureus: Role of the hydrophobic beta hairpin in virulence
rcsb
source organism Staphylococcus aureus rn4220
total genus 99
structure length 291
sequence length 291
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-07-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03372 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.10.10 Alpha Beta 4-Layer Sandwich Deoxyribonuclease I; Chain A Endonuclease/exonuclease/phosphatase 3i48A00
3FZIA 4CMLA 5J3SA 2XSWA 5DV4A 5INLA 1DNKA 3G6SA 4LNDA 1YJHA 3W2XA 3NGNA 3G3CA 1DE9A 2F2FB 4GEWA 3G4TA 3NR8A 3W3DB 4GYZA 1DEWA 5DFHA 3GA6A 4B5JA 3G0RA 3MPRA 4L21A 3U8UA 3NGQA 5INQA 3G2CA 4B5HA 1DE8A 5INMA 5J42A 2O3CA 3I46A 4B5GA 2A3ZB 5DV2A 5CFGA 5INNA 5INPA 3K55A 1HD7A 4RUWA 4FPVA 2F1NA 2J63A 2A42B 4L20A 5CFEA 5J8NA 2DNJA 2ISIA 2DDTA 1NTFA 3L1WA 4F1HA 3CJCD 1Y21A 4B5IA 5DG0A 3I5VA 2IMQX 4IEMA 5INKA 4PUQA 1SI6X 3I41A 3G0AA 3NGOA 2VOAA 2DDSA 3W2YA 4B5FA 5J3PA 4QHDA 2UYRX 4QHEA 5J3ZA 3WCXA 1E9NA 4CMNA 4L1YA 2JC5A 3G8VA 4GZ2A 1BIXA 4JG3A 5EWTA 2EI9A 5A7JA 1I9YA 4F1IA 3I48A 3G1KA 3DNIA 2A40B 2DDRA 5INOA 3G2DA 3MTCA 1ZWXA 4F1HB 4B5MA 5A7IA 4QH9A 4L1ZA 1VYBA 4GZ0A 2O3HA 4F1RA 1AKOA 4K6LF 1SR4B 2JC4A 3G3YA 4A9CA 5HT2A 3G00A 4C1RA 5DFFA 2V0SA 2D1KB 2V0RA 3TEBA 1WDUA 5DFJA 1ATND 3N9VA 4GZ1A 1I9ZA 3G91A 3G38A 2A41B 5DFIA 4AWNA 4FVAA
chains in the Genus database with same CATH superfamily
3FZIA 4CMLA 5J3SA 2XSWA 5DV4A 5INLA 1DNKA 3G6SA 4LNDA 1YJHA 3W2XA 3NGNA 3G3CA 1DE9A 2F2FB 4GEWA 3G4TA 3NR8A 3W3DB 4GYZA 1DEWA 5DFHA 3GA6A 4B5JA 3G0RA 3MPRA 4L21A 3U8UA 3NGQA 5INQA 3G2CA 4B5HA 1DE8A 5INMA 5J42A 2O3CA 3I46A 4B5GA 2A3ZB 5DV2A 5CFGA 5INNA 5INPA 3K55A 1HD7A 4RUWA 4FPVA 2F1NA 2J63A 2A42B 4L20A 5CFEA 5J8NA 2DNJA 2ISIA 2DDTA 1NTFA 3L1WA 4F1HA 3CJCD 1Y21A 4B5IA 5DG0A 3I5VA 2IMQX 4IEMA 5INKA 4PUQA 1SI6X 3I41A 3G0AA 3NGOA 2VOAA 2DDSA 3W2YA 4B5FA 5J3PA 4QHDA 2UYRX 4QHEA 5J3ZA 3WCXA 1E9NA 4CMNA 4L1YA 2JC5A 3G8VA 4GZ2A 1BIXA 4JG3A 5EWTA 2EI9A 5A7JA 1I9YA 4F1IA 3I48A 3G1KA 3DNIA 2A40B 2DDRA 5INOA 3G2DA 3MTCA 1ZWXA 4F1HB 4B5MA 5A7IA 4QH9A 4L1ZA 1VYBA 4GZ0A 2O3HA 4F1RA 1AKOA 4K6LF 1SR4B 2JC4A 3G3YA 4A9CA 5HT2A 3G00A 4C1RA 5DFFA 2V0SA 2D1KB 2V0RA 3TEBA 1WDUA 5DFJA 1ATND 3N9VA 4GZ1A 1I9ZA 3G91A 3G38A 2A41B 5DFIA 4AWNA 4FVAA
chains in the Genus database with same CATH topology
3FZIA 4CMLA 5J3SA 2XSWA 5DV4A 5INLA 1DNKA 3G6SA 4LNDA 1YJHA 3W2XA 3NGNA 3G3CA 1DE9A 2F2FB 4GEWA 3G4TA 3NR8A 3W3DB 4GYZA 1DEWA 5DFHA 3GA6A 4B5JA 3G0RA 3MPRA 4L21A 3U8UA 3NGQA 5INQA 3G2CA 4B5HA 1DE8A 5INMA 5J42A 2O3CA 3I46A 4B5GA 2A3ZB 5DV2A 5CFGA 5INNA 5INPA 3K55A 1HD7A 4RUWA 4FPVA 2F1NA 2J63A 2A42B 4L20A 5CFEA 5J8NA 2DNJA 2ISIA 2DDTA 1NTFA 3L1WA 4F1HA 3CJCD 1Y21A 4B5IA 5DG0A 3I5VA 2IMQX 4IEMA 5INKA 4PUQA 1SI6X 3I41A 3G0AA 3NGOA 2VOAA 2DDSA 3W2YA 4B5FA 5J3PA 4QHDA 2UYRX 4QHEA 5J3ZA 3WCXA 1E9NA 4CMNA 4L1YA 2JC5A 3G8VA 4GZ2A 1BIXA 4JG3A 5EWTA 2EI9A 5A7JA 1I9YA 4F1IA 3I48A 3G1KA 3DNIA 2A40B 2DDRA 5INOA 3G2DA 3MTCA 1ZWXA 4F1HB 4B5MA 5A7IA 4QH9A 4L1ZA 1VYBA 4GZ0A 2O3HA 4F1RA 1AKOA 4K6LF 1SR4B 2JC4A 3G3YA 4A9CA 5HT2A 3G00A 4C1RA 5DFFA 2V0SA 2D1KB 2V0RA 3TEBA 1WDUA 5DFJA 1ATND 3N9VA 4GZ1A 1I9ZA 3G91A 3G38A 2A41B 5DFIA 4AWNA 4FVAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FZI A;  4CML A;  5J3S A;  2XSW A;  5DV4 A;  5INL A;  1DNK A;  3G6S A;  4LND A;  1YJH A;  3W2X A;  3NGN A;  3G3C A;  1DE9 A;  2F2F B;  4GEW A;  3G4T A;  3NR8 A;  3W3D B;  4GYZ A;  1DEW A;  5DFH A;  3GA6 A;  4B5J A;  3G0R A;  3MPR A;  4L21 A;  3U8U A;  3NGQ A;  5INQ A;  3G2C A;  4B5H A;  1DE8 A;  5INM A;  5J42 A;  2O3C A;  3I46 A;  4B5G A;  2A3Z B;  5DV2 A;  5CFG A;  5INN A;  5INP A;  3K55 A;  1HD7 A;  4RUW A;  4FPV A;  2F1N A;  2J63 A;  2A42 B;  4L20 A;  5CFE A;  5J8N A;  2DNJ A;  2ISI A;  2DDT A;  1NTF A;  3L1W A;  4F1H A;  3CJC D;  1Y21 A;  4B5I A;  5DG0 A;  3I5V A;  2IMQ X;  4IEM A;  5INK A;  4PUQ A;  1SI6 X;  3I41 A;  3G0A A;  3NGO A;  2VOA A;  2DDS A;  3W2Y A;  4B5F A;  5J3P A;  4QHD A;  2UYR X;  4QHE A;  5J3Z A;  3WCX A;  1E9N A;  4CMN A;  4L1Y A;  2JC5 A;  3G8V A;  4GZ2 A;  1BIX A;  4JG3 A;  5EWT A;  2EI9 A;  5A7J A;  1I9Y A;  4F1I A;  3I48 A;  3G1K A;  3DNI A;  2A40 B;  2DDR A;  5INO A;  3G2D A;  3MTC A;  1ZWX A;  4F1H B;  4B5M A;  5A7I A;  4QH9 A;  4L1Z A;  1VYB A;  4GZ0 A;  2O3H A;  4F1R A;  1AKO A;  4K6L F;  1SR4 B;  2JC4 A;  3G3Y A;  4A9C A;  5HT2 A;  3G00 A;  4C1R A;  5DFF A;  2V0S A;  2D1K B;  2V0R A;  3TEB A;  1WDU A;  5DFJ A;  1ATN D;  3N9V A;  4GZ1 A;  1I9Z A;  3G91 A;  3G38 A;  2A41 B;  5DFI A;  4AWN A;  4FVA A; 
#chains in the Genus database with same CATH topology
 3FZI A;  4CML A;  5J3S A;  2XSW A;  5DV4 A;  5INL A;  1DNK A;  3G6S A;  4LND A;  1YJH A;  3W2X A;  3NGN A;  3G3C A;  1DE9 A;  2F2F B;  4GEW A;  3G4T A;  3NR8 A;  3W3D B;  4GYZ A;  1DEW A;  5DFH A;  3GA6 A;  4B5J A;  3G0R A;  3MPR A;  4L21 A;  3U8U A;  3NGQ A;  5INQ A;  3G2C A;  4B5H A;  1DE8 A;  5INM A;  5J42 A;  2O3C A;  3I46 A;  4B5G A;  2A3Z B;  5DV2 A;  5CFG A;  5INN A;  5INP A;  3K55 A;  1HD7 A;  4RUW A;  4FPV A;  2F1N A;  2J63 A;  2A42 B;  4L20 A;  5CFE A;  5J8N A;  2DNJ A;  2ISI A;  2DDT A;  1NTF A;  3L1W A;  4F1H A;  3CJC D;  1Y21 A;  4B5I A;  5DG0 A;  3I5V A;  2IMQ X;  4IEM A;  5INK A;  4PUQ A;  1SI6 X;  3I41 A;  3G0A A;  3NGO A;  2VOA A;  2DDS A;  3W2Y A;  4B5F A;  5J3P A;  4QHD A;  2UYR X;  4QHE A;  5J3Z A;  3WCX A;  1E9N A;  4CMN A;  4L1Y A;  2JC5 A;  3G8V A;  4GZ2 A;  1BIX A;  4JG3 A;  5EWT A;  2EI9 A;  5A7J A;  1I9Y A;  4F1I A;  3I48 A;  3G1K A;  3DNI A;  2A40 B;  2DDR A;  5INO A;  3G2D A;  3MTC A;  1ZWX A;  4F1H B;  4B5M A;  5A7I A;  4QH9 A;  4L1Z A;  1VYB A;  4GZ0 A;  2O3H A;  4F1R A;  1AKO A;  4K6L F;  1SR4 B;  2JC4 A;  3G3Y A;  4A9C A;  5HT2 A;  3G00 A;  4C1R A;  5DFF A;  2V0S A;  2D1K B;  2V0R A;  3TEB A;  1WDU A;  5DFJ A;  1ATN D;  3N9V A;  4GZ1 A;  1I9Z A;  3G91 A;  3G38 A;  2A41 B;  5DFI A;  4AWN A;  4FVA A; 
#chains in the Genus database with same CATH homology
 3FZI A;  4CML A;  5J3S A;  2XSW A;  5DV4 A;  5INL A;  1DNK A;  3G6S A;  4LND A;  1YJH A;  3W2X A;  3NGN A;  3G3C A;  1DE9 A;  2F2F B;  4GEW A;  3G4T A;  3NR8 A;  3W3D B;  4GYZ A;  1DEW A;  5DFH A;  3GA6 A;  4B5J A;  3G0R A;  3MPR A;  4L21 A;  3U8U A;  3NGQ A;  5INQ A;  3G2C A;  4B5H A;  1DE8 A;  5INM A;  5J42 A;  2O3C A;  3I46 A;  4B5G A;  2A3Z B;  5DV2 A;  5CFG A;  5INN A;  5INP A;  3K55 A;  1HD7 A;  4RUW A;  4FPV A;  2F1N A;  2J63 A;  2A42 B;  4L20 A;  5CFE A;  5J8N A;  2DNJ A;  2ISI A;  2DDT A;  1NTF A;  3L1W A;  4F1H A;  3CJC D;  1Y21 A;  4B5I A;  5DG0 A;  3I5V A;  2IMQ X;  4IEM A;  5INK A;  4PUQ A;  1SI6 X;  3I41 A;  3G0A A;  3NGO A;  2VOA A;  2DDS A;  3W2Y A;  4B5F A;  5J3P A;  4QHD A;  2UYR X;  4QHE A;  5J3Z A;  3WCX A;  1E9N A;  4CMN A;  4L1Y A;  2JC5 A;  3G8V A;  4GZ2 A;  1BIX A;  4JG3 A;  5EWT A;  2EI9 A;  5A7J A;  1I9Y A;  4F1I A;  3I48 A;  3G1K A;  3DNI A;  2A40 B;  2DDR A;  5INO A;  3G2D A;  3MTC A;  1ZWX A;  4F1H B;  4B5M A;  5A7I A;  4QH9 A;  4L1Z A;  1VYB A;  4GZ0 A;  2O3H A;  4F1R A;  1AKO A;  4K6L F;  1SR4 B;  2JC4 A;  3G3Y A;  4A9C A;  5HT2 A;  3G00 A;  4C1R A;  5DFF A;  2V0S A;  2D1K B;  2V0R A;  3TEB A;  1WDU A;  5DFJ A;  1ATN D;  3N9V A;  4GZ1 A;  1I9Z A;  3G91 A;  3G38 A;  2A41 B;  5DFI A;  4AWN A;  4FVA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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