3I4ML

8-oxoguanine containing rna polymerase ii elongation complex d
Total Genus 2
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
47
structure length
47
Chain Sequence
TATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription,transferase/dna-rna hybrid
molecule keywords DNA-directed RNA polymerase II subunit RPB1
publication title Molecular basis of transcriptional mutagenesis at 8-oxoguanine
pubmed doi rcsb
total genus 2
structure length 47
sequence length 47
ec nomenclature
pdb deposition date 2009-07-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF03604 DNA_RNApol_7kD DNA directed RNA polymerase, 7 kDa subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.30 Mainly Beta Single Sheet Rubrerythrin, domain 2 RNA polymerase ii, chain L 3i4mL00
2R93L 1R9TL 4Y52L 4Y7NL 1TWHL 2JA5L 5IYCL 2R92L 4A3FL 4A3EL 3HKZP 3PO2L 3H0GL 3I4NL 5C4JL 5IP9L 1TWFL 1SFOL 3GTLL 1I50L 3M3YL 5M3ML 3HOVL 2E2IL 3HOZL 4A3CL 4AYBP 4A3JL 5FLML 4X6AL 5M5YL 3S1RL 3S1QL 3S16L 3S2DL 4A3KL 1TWGL 2JA6L 1TWAL 5FJ8L 3K7AL 3HOWL 3GTOL 2NVYL 4C3IL 2JA8L 5IYDL 1WCML 5IYBL 5C44L 3S1NL 1I6HL 4C3HL 3S14L 1K83L 5M3FL 1Y1WL 4A3BL 3GTML 2WAQP 5M5WL 2E2HL 2NVXL 3HOXL 4A3DL 3GTQL 3RZOL 5C4XL 4QIWP 3CQZL 4BBRL 5IP7L 2JA7L 3FKIL 2R7ZL 3S1ML 4A93L 3HOYL 3RZDL 3GTJL 1I3QL 2NVQL 2E2JL 4A3ML 4BY7L 3I4ML 3M4OL 2WB1P 4BBSL 5C3EL 3S17L 2NVTL 3GTGL 5M5XL 1TWCL 4A3LL 3HOUL 3GTPL 2B63L 2Y0SP 2VUML 1Y1VL 4C3JL 4C2M1 4BY1L 3PO3L 3GTKL 4A3GL 3H3VM 2YU9L 3S2HL 4A3IL 4BXXL 3S15L 2PMZP
chains in the Genus database with same CATH superfamily
1R9TL 2QL0A 5MFPA 1RB9A 4ZN3B 1YK4A 3PO2L 3H0GL 2CKCA 3KYUA 1YUZA 4ME3A 1JYBA 3GTLL 3M3YL 2A69D 2E2IL 3RZ6A 3IU3I 2ERJA 2HR5A 4AR5A 5GAHc 4JAEA 4LHNA 5M5YL 5MFZA 3S16L 1QQTA 3K35A 5MF6A 3A44A 1QCVA 2PPTA 2CKAA 5GAEc 5EIOC 1WCML 5IYBL 4AI0A 1VZHA 5GAGc 1I6HL 4LHLA 5JVH1 1F4LA 1B13A 5M3FL 2AYJA 4A3BL 2WAQP 1VZGA 2NVXL 4A3DL 5C4XL 1VCXA 1BE7A 2XJUA 4QIWP 3CQZL 1PFVA 4BBRL 5AI3A 3HJYB 3H9CA 1IU5A 1FHMA 3S1ML 4XXBB 4A93L 1IRNA 3RZDL 3GTJL 1I3QL 1IU6A 4TPUA 3I4ML 3QVDA 5EINC 1NXGA 5C3EL 4AHYA 2NVTL 3GTGL 3GTPL 4AHZA 8RXNA 2VUML 2JI3A 2KKDA 5MLC3 3KYYA 2YU9L 1OWBA 1RDVA 2ERSA 3B08B 3S2HL 1LKMA 4Y52L 3LWRB 5IYCL 1SMWA 1ODHA 4A3FL 3H97A 5C4JL 4POFA 3B0AB 1BQ9A 1TWFL 1I50L 4AI1A 1Z92B 1S30A 5M3ML 3HOVL 1R0IA 3JR7A 5GADc 4A3JL 5FLML 3S1RL 3S1QL 2C6BA 3PKIA 4AR6A 1TWGL 2PVXA 2JA6L 1TWAL 1YK5A 5FJ8L 3K7AL 3GTOL 5AI2A 1PFUA 5IYDL 2Z3QB 1YV1A 1R0GA 5C44L 2EY4E 2M6PA 2JI1A 2XJVA 4U671 2E2HL 3MQKB 3MPSA 3HOXL 2RDVA 2RFKB 4JAFA 2JA7L 3P8BA 4V196 1PZXA 7RXNA 5IY0A 1CAAA 3M4OL 1VZIA 1LKOA 3LWPB 4BBSL 2A68D 3RYGA 1RYTA 1B71A 2ZIXA 5MGNA 2H12A 2M4YA 3J7Z1 4AHWA 3VPBE 1OWCA 5DM61 4BY1L 3PO3L 3GTKL 3KYXA 4A3IL 1NXEA 1T9PA 3FDJA 2PMZP 4GS7D 1WJVA 4AR3A 1TWHL 4YWLA 1SMUA 2XJQA 3P2AA 1LKPA 2M4VA 2V3BB 2XJSA 6RXNA 2B5ID 1B2OA 1RWDA 2JI2A 1SFOL 1P7PA 3HOZL 4A3CL 4AYBP 1LTLA 3KYWA 1H7VA 4AI2A 2AUSB 2XJTA 2NYDA 1RDGA 3ZG6A 3PIO1 3S2DL 2VL6A 2APOB 3HOWL 1IROA 4C3IL 3S1NL 4WFN1 1CADA 4JADA 1IW7D 1RYQA 3S14L 2C6AA 1T9OA 3PZAA 4E6YA 3MSUA 3GTQL 3NFPI 4YWMA 5H1Sc 2CR8A 3WWNB 5IP7L 1C09A 2MS3A 2R7ZL 3PL5A 4K9FA 2O5JD 3LPEB 1BRFA 2NVQL 2E2JL 4A3ML 3LNLA 1FHHA 4BY7L 1SMMA 1R0JA 2M6OA 3HOUL 3PKJA 2B63L 1NNQA 3KYVA 4C3JL 2LCQA 3LWVB 2PYAA 4AR4A 2GMGA 2L0ZA 3S15L 3RZOL 5JVG1 4A3KL 2KN9A 2R93L 4Y7NL 1YUXA 2JA5L 2R92L 1T9QA 2XJPA 3PIP1 1BQ8A 4A3EL 3RZTA 3HKZP 3I4NL 5IP9L 4AHXA 1R0FA 4UY81 2Z3RB 4X6AL 2DSXA 2PSMC 2HVYC 4AI3A 2V0EA 1S2ZA 4POGA 1R0HA 3PWFA 4B8CD 2NVYL 2JA8L 2AQCA 3LWQB 5AN9H 4RXNA 4C3HL 1K83L 1Y1WL 3GTML 5RXNA 5M5WL 1QYBA 1S24A 5DM71 5K2ME 2K2DA 4TVMA 1E8JA 1PFWA 3FKIL 3HJWB 2V0FA 3WWLA 1B2JA 3HOYL 1BFYA 3H99A 4G6BA 3HAXC 1ZRPA 2A6ED 2WB1P 1DX8A 2A6HD 3LWOB 3QQCE 3S17L 5M5XL 2BE5D 1TWCL 4A3LL 2Y0SP 1Y1VL 3H9BA 4ZN1B 1PFYA 4C2M1 4XGHA 1DVBA 2XJRA 4JAGA 2PVEA 4A3GL 3H3VM 4BXXL 2J9UB 3SS2A 3J7Y1
chains in the Genus database with same CATH topology
2R93L 1R9TL 4Y52L 4Y7NL 1TWHL 2JA5L 5IYCL 2R92L 4A3FL 4A3EL 3HKZP 3PO2L 3H0GL 3I4NL 5C4JL 5IP9L 1TWFL 1SFOL 3GTLL 1I50L 3M3YL 5M3ML 3HOVL 2E2IL 3HOZL 4A3CL 4AYBP 4A3JL 5FLML 4X6AL 5M5YL 3S1RL 3S1QL 3S16L 3S2DL 4A3KL 1TWGL 2JA6L 1TWAL 5FJ8L 3K7AL 3HOWL 3GTOL 2NVYL 4C3IL 2JA8L 5IYDL 1WCML 5IYBL 5C44L 3S1NL 1I6HL 4C3HL 3S14L 1K83L 5M3FL 1Y1WL 4A3BL 3GTML 2WAQP 5M5WL 2E2HL 2NVXL 3HOXL 4A3DL 3GTQL 3RZOL 5C4XL 4QIWP 3CQZL 4BBRL 5IP7L 2JA7L 3FKIL 2R7ZL 3S1ML 4A93L 3HOYL 3RZDL 3GTJL 1I3QL 2NVQL 2E2JL 4A3ML 4BY7L 3I4ML 3M4OL 2WB1P 4BBSL 5C3EL 3S17L 2NVTL 3GTGL 5M5XL 1TWCL 4A3LL 3HOUL 3GTPL 2B63L 2Y0SP 2VUML 1Y1VL 4C3JL 4C2M1 4BY1L 3PO3L 3GTKL 4A3GL 3H3VM 2YU9L 3S2HL 4A3IL 4BXXL 3S15L 2PMZP
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2R93 L;  1R9T L;  4Y52 L;  4Y7N L;  1TWH L;  2JA5 L;  5IYC L;  2R92 L;  4A3F L;  4A3E L;  3HKZ P;  3PO2 L;  3H0G L;  3I4N L;  5C4J L;  5IP9 L;  1TWF L;  1SFO L;  3GTL L;  1I50 L;  3M3Y L;  5M3M L;  3HOV L;  2E2I L;  3HOZ L;  4A3C L;  4AYB P;  4A3J L;  5FLM L;  4X6A L;  5M5Y L;  3S1R L;  3S1Q L;  3S16 L;  3S2D L;  4A3K L;  1TWG L;  2JA6 L;  1TWA L;  5FJ8 L;  3K7A L;  3HOW L;  3GTO L;  2NVY L;  4C3I L;  2JA8 L;  5IYD L;  1WCM L;  5IYB L;  5C44 L;  3S1N L;  1I6H L;  4C3H L;  3S14 L;  1K83 L;  5M3F L;  1Y1W L;  4A3B L;  3GTM L;  2WAQ P;  5M5W L;  2E2H L;  2NVX L;  3HOX L;  4A3D L;  3GTQ L;  3RZO L;  5C4X L;  4QIW P;  3CQZ L;  4BBR L;  5IP7 L;  2JA7 L;  3FKI L;  2R7Z L;  3S1M L;  4A93 L;  3HOY L;  3RZD L;  3GTJ L;  1I3Q L;  2NVQ L;  2E2J L;  4A3M L;  4BY7 L;  3I4M L;  3M4O L;  2WB1 P;  4BBS L;  5C3E L;  3S17 L;  2NVT L;  3GTG L;  5M5X L;  1TWC L;  4A3L L;  3HOU L;  3GTP L;  2B63 L;  2Y0S P;  2VUM L;  1Y1V L;  4C3J L;  4C2M 1;  4BY1 L;  3PO3 L;  3GTK L;  4A3G L;  3H3V M;  2YU9 L;  3S2H L;  4A3I L;  4BXX L;  3S15 L;  2PMZ P; 
#chains in the Genus database with same CATH topology
 1R9T L;  2QL0 A;  5MFP A;  1RB9 A;  4ZN3 B;  1YK4 A;  3PO2 L;  3H0G L;  2CKC A;  3KYU A;  1YUZ A;  4ME3 A;  1JYB A;  3GTL L;  3M3Y L;  2A69 D;  2E2I L;  3RZ6 A;  3IU3 I;  2ERJ A;  2HR5 A;  4AR5 A;  5GAH c;  4JAE A;  4LHN A;  5M5Y L;  5MFZ A;  3S16 L;  1QQT A;  3K35 A;  5MF6 A;  3A44 A;  1QCV A;  2PPT A;  2CKA A;  5GAE c;  5EIO C;  1WCM L;  5IYB L;  4AI0 A;  1VZH A;  5GAG c;  1I6H L;  4LHL A;  5JVH 1;  1F4L A;  1B13 A;  5M3F L;  2AYJ A;  4A3B L;  2WAQ P;  1VZG A;  2NVX L;  4A3D L;  5C4X L;  1VCX A;  1BE7 A;  2XJU A;  4QIW P;  3CQZ L;  1PFV A;  4BBR L;  5AI3 A;  3HJY B;  3H9C A;  1IU5 A;  1FHM A;  3S1M L;  4XXB B;  4A93 L;  1IRN A;  3RZD L;  3GTJ L;  1I3Q L;  1IU6 A;  4TPU A;  3I4M L;  3QVD A;  5EIN C;  1NXG A;  5C3E L;  4AHY A;  2NVT L;  3GTG L;  3GTP L;  4AHZ A;  8RXN A;  2VUM L;  2JI3 A;  2KKD A;  5MLC 3;  3KYY A;  2YU9 L;  1OWB A;  1RDV A;  2ERS A;  3B08 B;  3S2H L;  1LKM A;  4Y52 L;  3LWR B;  5IYC L;  1SMW A;  1ODH A;  4A3F L;  3H97 A;  5C4J L;  4POF A;  3B0A B;  1BQ9 A;  1TWF L;  1I50 L;  4AI1 A;  1Z92 B;  1S30 A;  5M3M L;  3HOV L;  1R0I A;  3JR7 A;  5GAD c;  4A3J L;  5FLM L;  3S1R L;  3S1Q L;  2C6B A;  3PKI A;  4AR6 A;  1TWG L;  2PVX A;  2JA6 L;  1TWA L;  1YK5 A;  5FJ8 L;  3K7A L;  3GTO L;  5AI2 A;  1PFU A;  5IYD L;  2Z3Q B;  1YV1 A;  1R0G A;  5C44 L;  2EY4 E;  2M6P A;  2JI1 A;  2XJV A;  4U67 1;  2E2H L;  3MQK B;  3MPS A;  3HOX L;  2RDV A;  2RFK B;  4JAF A;  2JA7 L;  3P8B A;  4V19 6;  1PZX A;  7RXN A;  5IY0 A;  1CAA A;  3M4O L;  1VZI A;  1LKO A;  3LWP B;  4BBS L;  2A68 D;  3RYG A;  1RYT A;  1B71 A;  2ZIX A;  5MGN A;  2H12 A;  2M4Y A;  3J7Z 1;  4AHW A;  3VPB E;  1OWC A;  5DM6 1;  4BY1 L;  3PO3 L;  3GTK L;  3KYX A;  4A3I L;  1NXE A;  1T9P A;  3FDJ A;  2PMZ P;  4GS7 D;  1WJV A;  4AR3 A;  1TWH L;  4YWL A;  1SMU A;  2XJQ A;  3P2A A;  1LKP A;  2M4V A;  2V3B B;  2XJS A;  6RXN A;  2B5I D;  1B2O A;  1RWD A;  2JI2 A;  1SFO L;  1P7P A;  3HOZ L;  4A3C L;  4AYB P;  1LTL A;  3KYW A;  1H7V A;  4AI2 A;  2AUS B;  2XJT A;  2NYD A;  1RDG A;  3ZG6 A;  3PIO 1;  3S2D L;  2VL6 A;  2APO B;  3HOW L;  1IRO A;  4C3I L;  3S1N L;  4WFN 1;  1CAD A;  4JAD A;  1IW7 D;  1RYQ A;  3S14 L;  2C6A A;  1T9O A;  3PZA A;  4E6Y A;  3MSU A;  3GTQ L;  3NFP I;  4YWM A;  5H1S c;  2CR8 A;  3WWN B;  5IP7 L;  1C09 A;  2MS3 A;  2R7Z L;  3PL5 A;  4K9F A;  2O5J D;  3LPE B;  1BRF A;  2NVQ L;  2E2J L;  4A3M L;  3LNL A;  1FHH A;  4BY7 L;  1SMM A;  1R0J A;  2M6O A;  3HOU L;  3PKJ A;  2B63 L;  1NNQ A;  3KYV A;  4C3J L;  2LCQ A;  3LWV B;  2PYA A;  4AR4 A;  2GMG A;  2L0Z A;  3S15 L;  3RZO L;  5JVG 1;  4A3K L;  2KN9 A;  2R93 L;  4Y7N L;  1YUX A;  2JA5 L;  2R92 L;  1T9Q A;  2XJP A;  3PIP 1;  1BQ8 A;  4A3E L;  3RZT A;  3HKZ P;  3I4N L;  5IP9 L;  4AHX A;  1R0F A;  4UY8 1;  2Z3R B;  4X6A L;  2DSX A;  2PSM C;  2HVY C;  4AI3 A;  2V0E A;  1S2Z A;  4POG A;  1R0H A;  3PWF A;  4B8C D;  2NVY L;  2JA8 L;  2AQC A;  3LWQ B;  5AN9 H;  4RXN A;  4C3H L;  1K83 L;  1Y1W L;  3GTM L;  5RXN A;  5M5W L;  1QYB A;  1S24 A;  5DM7 1;  5K2M E;  2K2D A;  4TVM A;  1E8J A;  1PFW A;  3FKI L;  3HJW B;  2V0F A;  3WWL A;  1B2J A;  3HOY L;  1BFY A;  3H99 A;  4G6B A;  3HAX C;  1ZRP A;  2A6E D;  2WB1 P;  1DX8 A;  2A6H D;  3LWO B;  3QQC E;  3S17 L;  5M5X L;  2BE5 D;  1TWC L;  4A3L L;  2Y0S P;  1Y1V L;  3H9B A;  4ZN1 B;  1PFY A;  4C2M 1;  4XGH A;  1DVB A;  2XJR A;  4JAG A;  2PVE A;  4A3G L;  3H3V M;  4BXX L;  2J9U B;  3SS2 A;  3J7Y 1; 
#chains in the Genus database with same CATH homology
 2R93 L;  1R9T L;  4Y52 L;  4Y7N L;  1TWH L;  2JA5 L;  5IYC L;  2R92 L;  4A3F L;  4A3E L;  3HKZ P;  3PO2 L;  3H0G L;  3I4N L;  5C4J L;  5IP9 L;  1TWF L;  1SFO L;  3GTL L;  1I50 L;  3M3Y L;  5M3M L;  3HOV L;  2E2I L;  3HOZ L;  4A3C L;  4AYB P;  4A3J L;  5FLM L;  4X6A L;  5M5Y L;  3S1R L;  3S1Q L;  3S16 L;  3S2D L;  4A3K L;  1TWG L;  2JA6 L;  1TWA L;  5FJ8 L;  3K7A L;  3HOW L;  3GTO L;  2NVY L;  4C3I L;  2JA8 L;  5IYD L;  1WCM L;  5IYB L;  5C44 L;  3S1N L;  1I6H L;  4C3H L;  3S14 L;  1K83 L;  5M3F L;  1Y1W L;  4A3B L;  3GTM L;  2WAQ P;  5M5W L;  2E2H L;  2NVX L;  3HOX L;  4A3D L;  3GTQ L;  3RZO L;  5C4X L;  4QIW P;  3CQZ L;  4BBR L;  5IP7 L;  2JA7 L;  3FKI L;  2R7Z L;  3S1M L;  4A93 L;  3HOY L;  3RZD L;  3GTJ L;  1I3Q L;  2NVQ L;  2E2J L;  4A3M L;  4BY7 L;  3I4M L;  3M4O L;  2WB1 P;  4BBS L;  5C3E L;  3S17 L;  2NVT L;  3GTG L;  5M5X L;  1TWC L;  4A3L L;  3HOU L;  3GTP L;  2B63 L;  2Y0S P;  2VUM L;  1Y1V L;  4C3J L;  4C2M 1;  4BY1 L;  3PO3 L;  3GTK L;  4A3G L;  3H3V M;  2YU9 L;  3S2H L;  4A3I L;  4BXX L;  3S15 L;  2PMZ P; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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