3I4NF

8-oxoguanine containing rna polymerase ii elongation complex e
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
88
structure length
88
Chain Sequence
TLKEKAIPKDQRATTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDGSFEDWSVEELIVDL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription,transferase/dna-rna hybrid
molecule keywords DNA-directed RNA polymerase II subunit RPB1
publication title Molecular basis of transcriptional mutagenesis at 8-oxoguanine
pubmed doi rcsb
total genus 23
structure length 88
sequence length 88
ec nomenclature
pdb deposition date 2009-07-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
F PF01192 RNA_pol_Rpb6 RNA polymerase Rpb6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.940.10 Alpha Beta Alpha-Beta Complex Eukaryotic RPB6 RNA polymerase subunit Eukaryotic RPB6 RNA polymerase subunit 3i4nF00
4Q4ZE 3FKIF 4A3EF 4A3FF 2JA6F 4KN7E 2YU9F 3GTGF 4ZH4E 1SMYE 3H0GF 1I50F 4C3HF 5D4DE 4Y52F 5IYBF 2E2JF 2JA7F 2NVXF 5IPLE 1TWFF 4AYBK 4BY7F 3GTMF 3HKZK 4YFKE 5E17E 3HOZF 1WCMF 4XLPE 2PPBE 1TWAF 4A3CF 3S2DF 3CQZF 5C3EF 3S14F 4MEXE 3RZDF 2A69E 4A3DF 1ZYRE 2WB1I 2NVQF 2O5JE 5IP9F 2B63F 5C44F 2E2IF 4G7ZE 1QKLA 3I4NF 5IYCF 1YNNK 1R9TF 3PO2F 3EQLE 3WODE 4C2MF 3HOVF 5TMCE 3RZOF 2PMZK 3S16F 4C3IF 2R92F 4BXXF 4BBSF 4JK1E 4A3KF 4G7HE 5D4EE 2VUMF 5TMFE 3PO3F 3S1RF 3HOWF 1SFOF 1TWGF 1TWHF 4G7OE 2A6EE 5FLMF 4A3IF 4BBRF 3I4MF 3GTOF 5M3FF 3GTKF 3S2HF 2NVYF 2E2HF 4Q5SE 5M5YF 3GTPF 4LK0E 4A3JF 4KMUE 2O5IE 3HOXF 2Y0SI 4LJZE 4MEYE 5C4JF 3S1QF 4OIRE 1I3QF 1Y1WF 1TWCF 5BYHE 3GTQF 4A3GF 3DXJE 4X6AF 1Y1VF 5FJ8F 3H3VG 4YFXE 1I6VE 2WAQK 5IP7F 3S15F 4XSZE 4OINE 2BE5E 2A68E 4A93F 2JA8F 2CW0E 5M5XF 2R93F 3S1NF 4OIQE 1IW7E 1HQME 4MQ9E 1YNJK 4XLNE 3HOUF 4GZYE 2JA5F 3K7AF 4C3JF 2R7ZF 4OIOE 4YFNE 4A3MF 5E18E 4OIPE 4Y7NF 3GTLF 4LLGE 3GTJF 5M5WF 5C4XF 2NVTF 3HOYF 4YG2E 1K83F 4BY1F 1I6HF 3S1MF 4A3LF 5D4CE 2A6HE 4KN4E 3M3YF 5M3MF 4XSXE 3M4OF 4A3BF 4LK1E 5IYDF 3S17F
chains in the Genus database with same CATH superfamily
4Q4ZE 3M4OE 3FKIF 4A3EF 4A3FF 2JA6F 4KN7E 2YU9F 2R7ZE 4BBSE 3GTGF 4ZH4E 1SMYE 3H0GF 1I50F 4C3HF 5D4DE 2E2IE 3FKIE 4Y52F 4AYBH 4A3EE 5IYBF 2E2JF 2JA7F 2NVXF 2JA6E 2YU9E 3HKZH 3S1NE 5IPLE 1TWFF 4AYBK 4BY7F 3GTMF 3HKZK 4YFKE 5E17E 3HOZF 2JA7E 1WCMF 4XLPE 1R9TE 1TWAF 2WB1H 2NVXE 2PPBE 1TWFE 3PO2E 4A3CF 3S2DF 1DZFA 3CQZF 5C3EF 3RZOE 3S14F 3S16E 4MEXE 4C3IE 3RZDF 1WCME 3HOZE 4BXXE 2R92E 2A69E 4A3DF 5C3EE 3S14E 2VUME 1ZYRE 2WB1I 2NVQF 2O5JE 5IP9F 3HOWE 2B63F 5C44F 1SFOE 1TWGE 2E2IF 4A3DE 4G7ZE 1QKLA 5FLME 3I4NF 2NVQE 3I4ME 5IP9E 5M3FE 2B63E 3S2HE 2NVYE 5C44E 5IYCF 5M5YE 3GTPE 1YNNK 1R9TF 3PO2F 3EQLE 3S1QE 2PMZH 3WODE 5C4JE 4C2MF 3HOVF 1I3QE 5TMCE 3RZOF 5IYCE 1TWCE 2PMZK 3S16F 4C3IF 4A3GE 2R92F 4BXXF 4X6AE 4BBSF 4JK1E 5FJ8E 4A3KF 4C2ME 4G7HE 3HOVE 5IP7E 5D4EE 2VUMF 5TMFE 3PO3F 3S1RF 3HOWF 2Y0SH 4A3KE 1TWGF 1SFOF 1TWHF 4G7OE 2A6EE 5FLMF 4A3IF 4BBRF 3I4MF 3GTOF 3PO3E 5M3FF 3GTKF 3S1RE 3S2HF 2NVYF 1EIKA 2JA8E 1TWHE 2E2HF 4A3IE 4Q5SE 2R93E 4BBRE 5M5YF 3GTPF 4LK0E 4A3JF 4KMUE 4QIWH 2O5IE 3HOXF 3GTKE 2Y0SI 4LJZE 4MEYE 5C4JF 3I4NE 3S1QF 4QIWK 4OIRE 1I3QF 2E2HE 3HOUE 1Y1WF 1TWCF 5BYHE 3GTQF 4A3GF 3DXJE 4A3JE 2JA5E 1Y1VF 3K7AE 3HOXE 4X6AF 2WAQH 4C3JE 5FJ8F 3H3VG 4YFXE 1I6VE 2WAQK 5IP7F 1Y1WE 4XSZE 3GTQE 3GTLE 3S15F 1Y1VE 3GTJE 5M5WE 3HOYE 4OINE 1K83E 2BE5E 4BY1E 2A68E 3S1ME 4A3LE 3S15E 4A93F 5M3ME 2JA8F 2CW0E 5M5XF 4A3BE 2R93F 2KRXA 3S1NF 3GTOE 5IYDE 4OIQE 3S17E 4A93E 1IW7E 1HQME 4MQ9E 1YNJK 4XLNE 3HOUF 5M5XE 4A3FE 4GZYE 2JA5F 3K7AF 4C3JF 2R7ZF 4OIOE 4YFNE 3GTGE 4C3HE 3H0GE 1I50E 4OIPE 5E18E 4A3MF 4Y52E 4Y7NF 5IYBE 2E2JE 3GTLF 4LLGE 3GTJF 5M5WF 5C4XF 4BY7E 2NVTF 3HOYF 3GTME 4A3ME 4YG2E 1K83F 4BY1F 1I6HF 3S1MF 4A3LF 4Y7NE 5D4CE 2A6HE 3H3VF 4KN4E 1TWAE 3M3YF 4A3CE 5C4XE 5M3MF 2NVTE 3S2DE 3CQZE 4XSXE 3M4OF 1I6HE 4A3BF 4LK1E 3RZDE 3M3YE 5IYDF 3S17F
chains in the Genus database with same CATH topology
4Q4ZE 3FKIF 4A3EF 4A3FF 2JA6F 4KN7E 2YU9F 3GTGF 4ZH4E 1SMYE 3H0GF 1I50F 4C3HF 5D4DE 4Y52F 5IYBF 2E2JF 2JA7F 2NVXF 5IPLE 1TWFF 4AYBK 4BY7F 3GTMF 3HKZK 4YFKE 5E17E 3HOZF 1WCMF 4XLPE 2PPBE 1TWAF 4A3CF 3S2DF 3CQZF 5C3EF 3S14F 4MEXE 3RZDF 2A69E 4A3DF 1ZYRE 2WB1I 2NVQF 2O5JE 5IP9F 2B63F 5C44F 2E2IF 4G7ZE 1QKLA 3I4NF 5IYCF 1YNNK 1R9TF 3PO2F 3EQLE 3WODE 4C2MF 3HOVF 5TMCE 3RZOF 2PMZK 3S16F 4C3IF 2R92F 4BXXF 4BBSF 4JK1E 4A3KF 4G7HE 5D4EE 2VUMF 5TMFE 3PO3F 3S1RF 3HOWF 1SFOF 1TWGF 1TWHF 4G7OE 2A6EE 5FLMF 4A3IF 4BBRF 3I4MF 3GTOF 5M3FF 3GTKF 3S2HF 2NVYF 2E2HF 4Q5SE 5M5YF 3GTPF 4LK0E 4A3JF 4KMUE 2O5IE 3HOXF 2Y0SI 4LJZE 4MEYE 5C4JF 3S1QF 4QIWK 4OIRE 1I3QF 1Y1WF 1TWCF 5BYHE 3GTQF 4A3GF 3DXJE 4X6AF 1Y1VF 5FJ8F 3H3VG 4YFXE 1I6VE 2WAQK 5IP7F 3S15F 4XSZE 4OINE 2BE5E 2A68E 4A93F 2JA8F 2CW0E 5M5XF 2R93F 2KRXA 3S1NF 4OIQE 1IW7E 1HQME 4MQ9E 1YNJK 4XLNE 3HOUF 4GZYE 2JA5F 3K7AF 4C3JF 2R7ZF 4OIOE 4YFNE 4A3MF 5E18E 4OIPE 4Y7NF 3GTLF 4LLGE 3GTJF 5M5WF 5C4XF 2NVTF 3HOYF 4YG2E 1K83F 4BY1F 1I6HF 3S1MF 4A3LF 5D4CE 2A6HE 4KN4E 3M3YF 5M3MF 4XSXE 3M4OF 4A3BF 4LK1E 5IYDF 3S17F
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4Q4Z E;  3FKI F;  4A3E F;  4A3F F;  2JA6 F;  4KN7 E;  2YU9 F;  3GTG F;  4ZH4 E;  1SMY E;  3H0G F;  1I50 F;  4C3H F;  5D4D E;  4Y52 F;  5IYB F;  2E2J F;  2JA7 F;  2NVX F;  5IPL E;  1TWF F;  4AYB K;  4BY7 F;  3GTM F;  3HKZ K;  4YFK E;  5E17 E;  3HOZ F;  1WCM F;  4XLP E;  2PPB E;  1TWA F;  4A3C F;  3S2D F;  3CQZ F;  5C3E F;  3S14 F;  4MEX E;  3RZD F;  2A69 E;  4A3D F;  1ZYR E;  2WB1 I;  2NVQ F;  2O5J E;  5IP9 F;  2B63 F;  5C44 F;  2E2I F;  4G7Z E;  1QKL A;  3I4N F;  5IYC F;  1YNN K;  1R9T F;  3PO2 F;  3EQL E;  3WOD E;  4C2M F;  3HOV F;  5TMC E;  3RZO F;  2PMZ K;  3S16 F;  4C3I F;  2R92 F;  4BXX F;  4BBS F;  4JK1 E;  4A3K F;  4G7H E;  5D4E E;  2VUM F;  5TMF E;  3PO3 F;  3S1R F;  3HOW F;  1SFO F;  1TWG F;  1TWH F;  4G7O E;  2A6E E;  5FLM F;  4A3I F;  4BBR F;  3I4M F;  3GTO F;  5M3F F;  3GTK F;  3S2H F;  2NVY F;  2E2H F;  4Q5S E;  5M5Y F;  3GTP F;  4LK0 E;  4A3J F;  4KMU E;  2O5I E;  3HOX F;  2Y0S I;  4LJZ E;  4MEY E;  5C4J F;  3S1Q F;  4OIR E;  1I3Q F;  1Y1W F;  1TWC F;  5BYH E;  3GTQ F;  4A3G F;  3DXJ E;  4X6A F;  1Y1V F;  5FJ8 F;  3H3V G;  4YFX E;  1I6V E;  2WAQ K;  5IP7 F;  3S15 F;  4XSZ E;  4OIN E;  2BE5 E;  2A68 E;  4A93 F;  2JA8 F;  2CW0 E;  5M5X F;  2R93 F;  3S1N F;  4OIQ E;  1IW7 E;  1HQM E;  4MQ9 E;  1YNJ K;  4XLN E;  3HOU F;  4GZY E;  2JA5 F;  3K7A F;  4C3J F;  2R7Z F;  4OIO E;  4YFN E;  4A3M F;  5E18 E;  4OIP E;  4Y7N F;  3GTL F;  4LLG E;  3GTJ F;  5M5W F;  5C4X F;  2NVT F;  3HOY F;  4YG2 E;  1K83 F;  4BY1 F;  1I6H F;  3S1M F;  4A3L F;  5D4C E;  2A6H E;  4KN4 E;  3M3Y F;  5M3M F;  4XSX E;  3M4O F;  4A3B F;  4LK1 E;  5IYD F;  3S17 F; 
#chains in the Genus database with same CATH topology
 4Q4Z E;  3M4O E;  3FKI F;  4A3E F;  4A3F F;  2JA6 F;  4KN7 E;  2YU9 F;  2R7Z E;  4BBS E;  3GTG F;  4ZH4 E;  1SMY E;  3H0G F;  1I50 F;  4C3H F;  5D4D E;  2E2I E;  3FKI E;  4Y52 F;  4AYB H;  4A3E E;  5IYB F;  2E2J F;  2JA7 F;  2NVX F;  2JA6 E;  2YU9 E;  3HKZ H;  3S1N E;  5IPL E;  1TWF F;  4AYB K;  4BY7 F;  3GTM F;  3HKZ K;  4YFK E;  5E17 E;  3HOZ F;  2JA7 E;  1WCM F;  4XLP E;  1R9T E;  1TWA F;  2WB1 H;  2NVX E;  2PPB E;  1TWF E;  3PO2 E;  4A3C F;  3S2D F;  1DZF A;  3CQZ F;  5C3E F;  3RZO E;  3S14 F;  3S16 E;  4MEX E;  4C3I E;  3RZD F;  1WCM E;  3HOZ E;  4BXX E;  2R92 E;  2A69 E;  4A3D F;  5C3E E;  3S14 E;  2VUM E;  1ZYR E;  2WB1 I;  2NVQ F;  2O5J E;  5IP9 F;  3HOW E;  2B63 F;  5C44 F;  1SFO E;  1TWG E;  2E2I F;  4A3D E;  4G7Z E;  1QKL A;  5FLM E;  3I4N F;  2NVQ E;  3I4M E;  5IP9 E;  5M3F E;  2B63 E;  3S2H E;  2NVY E;  5C44 E;  5IYC F;  5M5Y E;  3GTP E;  1YNN K;  1R9T F;  3PO2 F;  3EQL E;  3S1Q E;  2PMZ H;  3WOD E;  5C4J E;  4C2M F;  3HOV F;  1I3Q E;  5TMC E;  3RZO F;  5IYC E;  1TWC E;  2PMZ K;  3S16 F;  4C3I F;  4A3G E;  2R92 F;  4BXX F;  4X6A E;  4BBS F;  4JK1 E;  5FJ8 E;  4A3K F;  4C2M E;  4G7H E;  3HOV E;  5IP7 E;  5D4E E;  2VUM F;  5TMF E;  3PO3 F;  3S1R F;  3HOW F;  2Y0S H;  4A3K E;  1TWG F;  1SFO F;  1TWH F;  4G7O E;  2A6E E;  5FLM F;  4A3I F;  4BBR F;  3I4M F;  3GTO F;  3PO3 E;  5M3F F;  3GTK F;  3S1R E;  3S2H F;  2NVY F;  1EIK A;  2JA8 E;  1TWH E;  2E2H F;  4A3I E;  4Q5S E;  2R93 E;  4BBR E;  5M5Y F;  3GTP F;  4LK0 E;  4A3J F;  4KMU E;  4QIW H;  2O5I E;  3HOX F;  3GTK E;  2Y0S I;  4LJZ E;  4MEY E;  5C4J F;  3I4N E;  3S1Q F;  4QIW K;  4OIR E;  1I3Q F;  2E2H E;  3HOU E;  1Y1W F;  1TWC F;  5BYH E;  3GTQ F;  4A3G F;  3DXJ E;  4A3J E;  2JA5 E;  1Y1V F;  3K7A E;  3HOX E;  4X6A F;  2WAQ H;  4C3J E;  5FJ8 F;  3H3V G;  4YFX E;  1I6V E;  2WAQ K;  5IP7 F;  1Y1W E;  4XSZ E;  3GTQ E;  3GTL E;  3S15 F;  1Y1V E;  3GTJ E;  5M5W E;  3HOY E;  4OIN E;  1K83 E;  2BE5 E;  4BY1 E;  2A68 E;  3S1M E;  4A3L E;  3S15 E;  4A93 F;  5M3M E;  2JA8 F;  2CW0 E;  5M5X F;  4A3B E;  2R93 F;  2KRX A;  3S1N F;  3GTO E;  5IYD E;  4OIQ E;  3S17 E;  4A93 E;  1IW7 E;  1HQM E;  4MQ9 E;  1YNJ K;  4XLN E;  3HOU F;  5M5X E;  4A3F E;  4GZY E;  2JA5 F;  3K7A F;  4C3J F;  2R7Z F;  4OIO E;  4YFN E;  3GTG E;  4C3H E;  3H0G E;  1I50 E;  4OIP E;  5E18 E;  4A3M F;  4Y52 E;  4Y7N F;  5IYB E;  2E2J E;  3GTL F;  4LLG E;  3GTJ F;  5M5W F;  5C4X F;  4BY7 E;  2NVT F;  3HOY F;  3GTM E;  4A3M E;  4YG2 E;  1K83 F;  4BY1 F;  1I6H F;  3S1M F;  4A3L F;  4Y7N E;  5D4C E;  2A6H E;  3H3V F;  4KN4 E;  1TWA E;  3M3Y F;  4A3C E;  5C4X E;  5M3M F;  2NVT E;  3S2D E;  3CQZ E;  4XSX E;  3M4O F;  1I6H E;  4A3B F;  4LK1 E;  3RZD E;  3M3Y E;  5IYD F;  3S17 F; 
#chains in the Genus database with same CATH homology
 4Q4Z E;  3FKI F;  4A3E F;  4A3F F;  2JA6 F;  4KN7 E;  2YU9 F;  3GTG F;  4ZH4 E;  1SMY E;  3H0G F;  1I50 F;  4C3H F;  5D4D E;  4Y52 F;  5IYB F;  2E2J F;  2JA7 F;  2NVX F;  5IPL E;  1TWF F;  4AYB K;  4BY7 F;  3GTM F;  3HKZ K;  4YFK E;  5E17 E;  3HOZ F;  1WCM F;  4XLP E;  2PPB E;  1TWA F;  4A3C F;  3S2D F;  3CQZ F;  5C3E F;  3S14 F;  4MEX E;  3RZD F;  2A69 E;  4A3D F;  1ZYR E;  2WB1 I;  2NVQ F;  2O5J E;  5IP9 F;  2B63 F;  5C44 F;  2E2I F;  4G7Z E;  1QKL A;  3I4N F;  5IYC F;  1YNN K;  1R9T F;  3PO2 F;  3EQL E;  3WOD E;  4C2M F;  3HOV F;  5TMC E;  3RZO F;  2PMZ K;  3S16 F;  4C3I F;  2R92 F;  4BXX F;  4BBS F;  4JK1 E;  4A3K F;  4G7H E;  5D4E E;  2VUM F;  5TMF E;  3PO3 F;  3S1R F;  3HOW F;  1SFO F;  1TWG F;  1TWH F;  4G7O E;  2A6E E;  5FLM F;  4A3I F;  4BBR F;  3I4M F;  3GTO F;  5M3F F;  3GTK F;  3S2H F;  2NVY F;  2E2H F;  4Q5S E;  5M5Y F;  3GTP F;  4LK0 E;  4A3J F;  4KMU E;  2O5I E;  3HOX F;  2Y0S I;  4LJZ E;  4MEY E;  5C4J F;  3S1Q F;  4QIW K;  4OIR E;  1I3Q F;  1Y1W F;  1TWC F;  5BYH E;  3GTQ F;  4A3G F;  3DXJ E;  4X6A F;  1Y1V F;  5FJ8 F;  3H3V G;  4YFX E;  1I6V E;  2WAQ K;  5IP7 F;  3S15 F;  4XSZ E;  4OIN E;  2BE5 E;  2A68 E;  4A93 F;  2JA8 F;  2CW0 E;  5M5X F;  2R93 F;  2KRX A;  3S1N F;  4OIQ E;  1IW7 E;  1HQM E;  4MQ9 E;  1YNJ K;  4XLN E;  3HOU F;  4GZY E;  2JA5 F;  3K7A F;  4C3J F;  2R7Z F;  4OIO E;  4YFN E;  4A3M F;  5E18 E;  4OIP E;  4Y7N F;  3GTL F;  4LLG E;  3GTJ F;  5M5W F;  5C4X F;  2NVT F;  3HOY F;  4YG2 E;  1K83 F;  4BY1 F;  1I6H F;  3S1M F;  4A3L F;  5D4C E;  2A6H E;  4KN4 E;  3M3Y F;  5M3M F;  4XSX E;  3M4O F;  4A3B F;  4LK1 E;  5IYD F;  3S17 F; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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