3I4NL

8-oxoguanine containing rna polymerase ii elongation complex e
Total Genus 2
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
47
structure length
47
Chain Sequence
TATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords DNA-directed RNA polymerase II subunit RPB1
publication title Molecular basis of transcriptional mutagenesis at 8-oxoguanine
pubmed doi rcsb
molecule tags Transcription,transferase/dna-rna hybrid
total genus 2
structure length 47
sequence length 47
ec nomenclature
pdb deposition date 2009-07-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF03604 DNA_RNApol_7kD DNA directed RNA polymerase, 7 kDa subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.30 Mainly Beta Single Sheet Rubrerythrin, domain 2 RNA polymerase ii, chain L 3i4nL00
4C2M1 4C3JL 1Y1VL 4X6AL 4A3ML 3GTLL 5FLML 3HOYL 3M4OL 3M3YL 3S1QL 4A3BL 3S2HL 4BBRL 3S1RL 2E2JL 4A3KL 2PMZP 3S16L 2R7ZL 3I4NL 4BXXL 4BY7L 5M5XL 4C3HL 4QIWP 3GTQL 2E2IL 3H3VM 5M3FL 4A3IL 2JA8L 5M3ML 3H0GL 2VUML 3HOUL 5M5YL 5IYBL 3GTKL 3I4ML 3S15L 2WB1P 5IP9L 2JA5L 3FKIL 2R93L 5IP7L 3S14L 1I3QL 1K83L 3GTJL 5C4XL 4Y7NL 4Y52L 4A3DL 5C44L 2NVQL 1SFOL 3S1ML 4A3CL 1TWAL 5C3EL 4BY1L 1I50L 4A3JL 2NVYL 2E2HL 4A3LL 1R9TL 2B63L 3GTOL 3HOZL 3GTPL 3CQZL 1WCML 1TWGL 2WAQP 4AYBP 3S17L 2Y0SP 5C4JL 2R92L 2JA7L 3RZOL 3S1NL 4A93L 4A3GL 5M5WL 4BBSL 1TWFL 5FJ8L 3GTML 1TWHL 4A3EL 2NVTL 3RZDL 1Y1WL 3K7AL 2NVXL 4A3FL 3GTGL 3S2DL 2YU9L 2JA6L 3HOXL 1I6HL 1TWCL 3HOVL 3HOWL 5IYDL 4C3IL 5IYCL 3PO3L 3PO2L 3HKZP
chains in the Genus database with same CATH superfamily
4TPUA 5FLML 3M3YL 3P2AA 3S1RL 5RXNA 2PMZP 4BY7L 2J9UB 1NXGA 4POGA 4QIWP 5M3FL 1RYQA 1BQ8A 4GS7D 2DSXA 5IYBL 4U671 2JI3A 1T9QA 3I4ML 2WB1P 2JA5L 2EY4E 4G6BA 3FKIL 3S14L 1P7PA 5C4XL 5AI3A 4UY81 2L0ZA 4Y52L 5MFZA 5EIOC 1FHMA 3PZAA 1SFOL 3FDJA 2V0EA 2VL6A 4WFN1 3KYXA 1B2OA 1I50L 2NVYL 2E2HL 1R9TL 2B63L 8RXNA 3HOZL 3GTPL 2A69D 1S24A 4AR3A 1BRFA 1RDVA 3PIO1 1IRNA 5C4JL 2KN9A 1LKPA 1VZIA 2A6HD 4E6YA 4A93L 1R0GA 5FJ8L 3GTML 2NVTL 1SMWA 2YU9L 1I6HL 3KYVA 5GAGc 2M4YA 1PFWA 2M6PA 3ZG6A 2PSMC 1YUXA 3HKZP 3B0AB 3WWNB 3P8BA 1Z92B 1SMMA 1Y1VL 3GTLL 2ZIXA 3HOYL 2V3BB 4A3BL 1PZXA 2AUSB 3RZTA 2R7ZL 5M5XL 3QVDA 2RFKB 3KYUA 1R0JA 3GTQL 1B13A 2V0FA 2E2IL 3H3VM 2JA8L 2A6ED 2JI1A 2NYDA 2VUML 3RZ6A 4RXNA 3GTKL 1LKMA 3J7Z1 3S15L 2CKAA 7RXNA 4AR5A 2ERSA 2XJPA 2R93L 1B71A 5IP7L 3JR7A 1BE7A 1I3QL 3LNLA 1K83L 4Y7NL 4AI0A 2LCQA 1RB9A 3LWOB 3HJWB 1BFYA 1TWAL 5C3EL 4BY1L 2CKCA 2RDVA 3CQZL 3LWRB 2B5ID 1C09A 1S2ZA 1BQ9A 2PVEA 2R92L 5AI2A 2M6OA 1NXEA 3S1NL 1R0IA 4A3GL 3KYWA 1TWHL 4A3EL 1YK4A 4YWLA 4A3FL 3S2DL 4JAEA 2GMGA 3H9CA 4K9FA 4JAFA 4XXBB 1QYBA 5H1Sc 4TVMA 5IYCL 1R0FA 2Z3QB 4AI3A 1ZRPA 4ZN1B 3PWFA 1RDGA 3HJYB 2XJVA 4X6AL 1S30A 1PFUA 3IU3I 5GADc 4YWMA 1YK5A 1VZGA 3M4OL 3S2HL 2C6AA 2Z3RB 4AHYA 1WJVA 1IW7D 3S16L 2AQCA 2C6BA 4AR4A 5MF6A 4A3IL 1FHHA 5M3ML 3B08B 3PKJA 4AHZA 3HOUL 1LKOA 1IROA 5DM71 5IP9L 2BE5D 5DM61 2XJSA 3MQKB 1VZHA 5EINC 1R0HA 1RWDA 3GTJL 1YUZA 3SS2A 3PKIA 4V196 1YV1A 2XJTA 4JADA 4A3DL 2O5JD 5C44L 3K35A 3S1ML 2XJRA 4A3CL 4A3JL 4AI2A 4A3LL 1T9PA 5MLC3 3KYYA 2PVXA 2PPTA 1TWGL 4AHXA 3LWPB 4AYBP 3S17L 2Y0SP 3VPBE 1F4LA 2JA7L 3RZOL 5M5WL 2H12A 2JI2A 3RYGA 1QCVA 1Y1WL 2NVXL 4B8CD 2JA6L 2APOB 3LWQB 3PIP1 4ZN3B 1TWCL 3HOWL 3PO3L 4AI1A 1OWCA 4ME3A 2KKDA 4C2M1 4C3JL 2QL0A 2ERJA 2HVYC 5GAEc 4A3ML 1OWBA 2CR8A 2PYAA 3S1QL 4BBRL 2K2DA 3QQCE 3H97A 2E2JL 1E8JA 4A3KL 1CAAA 3I4NL 4BXXL 1PFYA 4C3HL 3J7Y1 1H7VA 4LHNA 3H0GL 2HR5A 1CADA 2AYJA 2A68D 5K2ME 5MGNA 5M5YL 1IU5A 3LPEB 1RYTA 5GAHc 4XGHA 4POFA 3MPSA 1LTLA 4LHLA 5JVG1 5JVH1 3PL5A 2NVQL 1QQTA 1T9OA 3A44A 2XJQA 3H99A 4AHWA 3GTOL 1IU6A 1WCML 2WAQP 2M4VA 1NNQA 5IY0A 1JYBA 4BBSL 1TWFL 3RZDL 5AN9H 1B2JA 3K7AL 4AR6A 2XJUA 3GTGL 3HOXL 1VCXA 3H9BA 3LWVB 3MSUA 2MS3A 1DVBA 3HOVL 3HAXC 5IYDL 4C3IL 1PFVA 3NFPI 4JAGA 1ODHA 6RXNA 3WWLA 1DX8A 3PO2L 1SMUA 5MFPA
chains in the Genus database with same CATH topology
4C2M1 4C3JL 1Y1VL 4X6AL 4A3ML 3GTLL 5FLML 3HOYL 3M4OL 3M3YL 3S1QL 4A3BL 3S2HL 4BBRL 3S1RL 2E2JL 4A3KL 2PMZP 3S16L 2R7ZL 3I4NL 4BXXL 4BY7L 5M5XL 4C3HL 4QIWP 3GTQL 2E2IL 3H3VM 5M3FL 4A3IL 2JA8L 5M3ML 3H0GL 2VUML 3HOUL 5M5YL 5IYBL 3GTKL 3I4ML 3S15L 2WB1P 5IP9L 2JA5L 3FKIL 2R93L 5IP7L 3S14L 1I3QL 1K83L 3GTJL 5C4XL 4Y7NL 4Y52L 4A3DL 5C44L 2NVQL 1SFOL 3S1ML 4A3CL 1TWAL 5C3EL 4BY1L 1I50L 4A3JL 2NVYL 2E2HL 4A3LL 1R9TL 2B63L 3GTOL 3HOZL 3GTPL 3CQZL 1WCML 1TWGL 2WAQP 4AYBP 3S17L 2Y0SP 5C4JL 2R92L 2JA7L 3RZOL 3S1NL 4A93L 4A3GL 5M5WL 4BBSL 1TWFL 5FJ8L 3GTML 1TWHL 4A3EL 2NVTL 3RZDL 1Y1WL 3K7AL 2NVXL 4A3FL 3GTGL 3S2DL 2YU9L 2JA6L 3HOXL 1I6HL 1TWCL 3HOVL 3HOWL 5IYDL 4C3IL 5IYCL 3PO3L 3PO2L 3HKZP
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4C2M 1;  4C3J L;  1Y1V L;  4X6A L;  4A3M L;  3GTL L;  5FLM L;  3HOY L;  3M4O L;  3M3Y L;  3S1Q L;  4A3B L;  3S2H L;  4BBR L;  3S1R L;  2E2J L;  4A3K L;  2PMZ P;  3S16 L;  2R7Z L;  3I4N L;  4BXX L;  4BY7 L;  5M5X L;  4C3H L;  4QIW P;  3GTQ L;  2E2I L;  3H3V M;  5M3F L;  4A3I L;  2JA8 L;  5M3M L;  3H0G L;  2VUM L;  3HOU L;  5M5Y L;  5IYB L;  3GTK L;  3I4M L;  3S15 L;  2WB1 P;  5IP9 L;  2JA5 L;  3FKI L;  2R93 L;  5IP7 L;  3S14 L;  1I3Q L;  1K83 L;  3GTJ L;  5C4X L;  4Y7N L;  4Y52 L;  4A3D L;  5C44 L;  2NVQ L;  1SFO L;  3S1M L;  4A3C L;  1TWA L;  5C3E L;  4BY1 L;  1I50 L;  4A3J L;  2NVY L;  2E2H L;  4A3L L;  1R9T L;  2B63 L;  3GTO L;  3HOZ L;  3GTP L;  3CQZ L;  1WCM L;  1TWG L;  2WAQ P;  4AYB P;  3S17 L;  2Y0S P;  5C4J L;  2R92 L;  2JA7 L;  3RZO L;  3S1N L;  4A93 L;  4A3G L;  5M5W L;  4BBS L;  1TWF L;  5FJ8 L;  3GTM L;  1TWH L;  4A3E L;  2NVT L;  3RZD L;  1Y1W L;  3K7A L;  2NVX L;  4A3F L;  3GTG L;  3S2D L;  2YU9 L;  2JA6 L;  3HOX L;  1I6H L;  1TWC L;  3HOV L;  3HOW L;  5IYD L;  4C3I L;  5IYC L;  3PO3 L;  3PO2 L;  3HKZ P; 
#chains in the Genus database with same CATH topology
 4TPU A;  5FLM L;  3M3Y L;  3P2A A;  3S1R L;  5RXN A;  2PMZ P;  4BY7 L;  2J9U B;  1NXG A;  4POG A;  4QIW P;  5M3F L;  1RYQ A;  1BQ8 A;  4GS7 D;  2DSX A;  5IYB L;  4U67 1;  2JI3 A;  1T9Q A;  3I4M L;  2WB1 P;  2JA5 L;  2EY4 E;  4G6B A;  3FKI L;  3S14 L;  1P7P A;  5C4X L;  5AI3 A;  4UY8 1;  2L0Z A;  4Y52 L;  5MFZ A;  5EIO C;  1FHM A;  3PZA A;  1SFO L;  3FDJ A;  2V0E A;  2VL6 A;  4WFN 1;  3KYX A;  1B2O A;  1I50 L;  2NVY L;  2E2H L;  1R9T L;  2B63 L;  8RXN A;  3HOZ L;  3GTP L;  2A69 D;  1S24 A;  4AR3 A;  1BRF A;  1RDV A;  3PIO 1;  1IRN A;  5C4J L;  2KN9 A;  1LKP A;  1VZI A;  2A6H D;  4E6Y A;  4A93 L;  1R0G A;  5FJ8 L;  3GTM L;  2NVT L;  1SMW A;  2YU9 L;  1I6H L;  3KYV A;  5GAG c;  2M4Y A;  1PFW A;  2M6P A;  3ZG6 A;  2PSM C;  1YUX A;  3HKZ P;  3B0A B;  3WWN B;  3P8B A;  1Z92 B;  1SMM A;  1Y1V L;  3GTL L;  2ZIX A;  3HOY L;  2V3B B;  4A3B L;  1PZX A;  2AUS B;  3RZT A;  2R7Z L;  5M5X L;  3QVD A;  2RFK B;  3KYU A;  1R0J A;  3GTQ L;  1B13 A;  2V0F A;  2E2I L;  3H3V M;  2JA8 L;  2A6E D;  2JI1 A;  2NYD A;  2VUM L;  3RZ6 A;  4RXN A;  3GTK L;  1LKM A;  3J7Z 1;  3S15 L;  2CKA A;  7RXN A;  4AR5 A;  2ERS A;  2XJP A;  2R93 L;  1B71 A;  5IP7 L;  3JR7 A;  1BE7 A;  1I3Q L;  3LNL A;  1K83 L;  4Y7N L;  4AI0 A;  2LCQ A;  1RB9 A;  3LWO B;  3HJW B;  1BFY A;  1TWA L;  5C3E L;  4BY1 L;  2CKC A;  2RDV A;  3CQZ L;  3LWR B;  2B5I D;  1C09 A;  1S2Z A;  1BQ9 A;  2PVE A;  2R92 L;  5AI2 A;  2M6O A;  1NXE A;  3S1N L;  1R0I A;  4A3G L;  3KYW A;  1TWH L;  4A3E L;  1YK4 A;  4YWL A;  4A3F L;  3S2D L;  4JAE A;  2GMG A;  3H9C A;  4K9F A;  4JAF A;  4XXB B;  1QYB A;  5H1S c;  4TVM A;  5IYC L;  1R0F A;  2Z3Q B;  4AI3 A;  1ZRP A;  4ZN1 B;  3PWF A;  1RDG A;  3HJY B;  2XJV A;  4X6A L;  1S30 A;  1PFU A;  3IU3 I;  5GAD c;  4YWM A;  1YK5 A;  1VZG A;  3M4O L;  3S2H L;  2C6A A;  2Z3R B;  4AHY A;  1WJV A;  1IW7 D;  3S16 L;  2AQC A;  2C6B A;  4AR4 A;  5MF6 A;  4A3I L;  1FHH A;  5M3M L;  3B08 B;  3PKJ A;  4AHZ A;  3HOU L;  1LKO A;  1IRO A;  5DM7 1;  5IP9 L;  2BE5 D;  5DM6 1;  2XJS A;  3MQK B;  1VZH A;  5EIN C;  1R0H A;  1RWD A;  3GTJ L;  1YUZ A;  3SS2 A;  3PKI A;  4V19 6;  1YV1 A;  2XJT A;  4JAD A;  4A3D L;  2O5J D;  5C44 L;  3K35 A;  3S1M L;  2XJR A;  4A3C L;  4A3J L;  4AI2 A;  4A3L L;  1T9P A;  5MLC 3;  3KYY A;  2PVX A;  2PPT A;  1TWG L;  4AHX A;  3LWP B;  4AYB P;  3S17 L;  2Y0S P;  3VPB E;  1F4L A;  2JA7 L;  3RZO L;  5M5W L;  2H12 A;  2JI2 A;  3RYG A;  1QCV A;  1Y1W L;  2NVX L;  4B8C D;  2JA6 L;  2APO B;  3LWQ B;  3PIP 1;  4ZN3 B;  1TWC L;  3HOW L;  3PO3 L;  4AI1 A;  1OWC A;  4ME3 A;  2KKD A;  4C2M 1;  4C3J L;  2QL0 A;  2ERJ A;  2HVY C;  5GAE c;  4A3M L;  1OWB A;  2CR8 A;  2PYA A;  3S1Q L;  4BBR L;  2K2D A;  3QQC E;  3H97 A;  2E2J L;  1E8J A;  4A3K L;  1CAA A;  3I4N L;  4BXX L;  1PFY A;  4C3H L;  3J7Y 1;  1H7V A;  4LHN A;  3H0G L;  2HR5 A;  1CAD A;  2AYJ A;  2A68 D;  5K2M E;  5MGN A;  5M5Y L;  1IU5 A;  3LPE B;  1RYT A;  5GAH c;  4XGH A;  4POF A;  3MPS A;  1LTL A;  4LHL A;  5JVG 1;  5JVH 1;  3PL5 A;  2NVQ L;  1QQT A;  1T9O A;  3A44 A;  2XJQ A;  3H99 A;  4AHW A;  3GTO L;  1IU6 A;  1WCM L;  2WAQ P;  2M4V A;  1NNQ A;  5IY0 A;  1JYB A;  4BBS L;  1TWF L;  3RZD L;  5AN9 H;  1B2J A;  3K7A L;  4AR6 A;  2XJU A;  3GTG L;  3HOX L;  1VCX A;  3H9B A;  3LWV B;  3MSU A;  2MS3 A;  1DVB A;  3HOV L;  3HAX C;  5IYD L;  4C3I L;  1PFV A;  3NFP I;  4JAG A;  1ODH A;  6RXN A;  3WWL A;  1DX8 A;  3PO2 L;  1SMU A;  5MFP A; 
#chains in the Genus database with same CATH homology
 4C2M 1;  4C3J L;  1Y1V L;  4X6A L;  4A3M L;  3GTL L;  5FLM L;  3HOY L;  3M4O L;  3M3Y L;  3S1Q L;  4A3B L;  3S2H L;  4BBR L;  3S1R L;  2E2J L;  4A3K L;  2PMZ P;  3S16 L;  2R7Z L;  3I4N L;  4BXX L;  4BY7 L;  5M5X L;  4C3H L;  4QIW P;  3GTQ L;  2E2I L;  3H3V M;  5M3F L;  4A3I L;  2JA8 L;  5M3M L;  3H0G L;  2VUM L;  3HOU L;  5M5Y L;  5IYB L;  3GTK L;  3I4M L;  3S15 L;  2WB1 P;  5IP9 L;  2JA5 L;  3FKI L;  2R93 L;  5IP7 L;  3S14 L;  1I3Q L;  1K83 L;  3GTJ L;  5C4X L;  4Y7N L;  4Y52 L;  4A3D L;  5C44 L;  2NVQ L;  1SFO L;  3S1M L;  4A3C L;  1TWA L;  5C3E L;  4BY1 L;  1I50 L;  4A3J L;  2NVY L;  2E2H L;  4A3L L;  1R9T L;  2B63 L;  3GTO L;  3HOZ L;  3GTP L;  3CQZ L;  1WCM L;  1TWG L;  2WAQ P;  4AYB P;  3S17 L;  2Y0S P;  5C4J L;  2R92 L;  2JA7 L;  3RZO L;  3S1N L;  4A93 L;  4A3G L;  5M5W L;  4BBS L;  1TWF L;  5FJ8 L;  3GTM L;  1TWH L;  4A3E L;  2NVT L;  3RZD L;  1Y1W L;  3K7A L;  2NVX L;  4A3F L;  3GTG L;  3S2D L;  2YU9 L;  2JA6 L;  3HOX L;  1I6H L;  1TWC L;  3HOV L;  3HOW L;  5IYD L;  4C3I L;  5IYC L;  3PO3 L;  3PO2 L;  3HKZ P; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...