3I4SA

Crystal structure of histidine triad protein blr8122 from bradyrhizobium japonicum
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
134
structure length
134
Chain Sequence
AWSLHSRLKEDTIDIGDLPLSKVLVIKDANYPWLLLVPRRPDAVEIIDLDEVQQAQLMTEISRVSRALKEITKCDKLNIAALGNLVPQLHVHIIARRTGDAAWPRPVWGVMQPLAHDATEVQNFISALRRKIWL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords HISTIDINE TRIAD PROTEIN
publication title CRYSTAL STRUCTURE OF HISTIDINE TRIAD PROTEIN FROM Bradyrhizobium japonicum
rcsb
source organism Bradyrhizobium japonicum
total genus 37
structure length 134
sequence length 134
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-07-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01230 HIT HIT domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.428.10 Alpha Beta 2-Layer Sandwich HIT family, subunit A HIT-like 3i4sA00
4QDEA 4YKLB 3R6FA 2OIKA 3KSVA 4EQEA 3RHNA 1VLRA 3BL7A 5ED3A 1ST0A 3SZQA 1ZWJA 2H39A 1HXQA 1XMLA 5CS2A 1XMMA 5FITA 4ZGLA 1FHIA 3NRDA 3O0MA 3O1XA 1KPAA 4NDFA 4EQGA 4INCA 4RHNA 5IPBA 4NDHA 3SPDA 3OXKA 3ANOA 1KPCA 3N1SA 3OHEA 1FITA 3FITA 4NDIA 4FITA 5I2EA 3P0TA 5IPCA 6RHNA 2FHIA 3OJ7A 5I2FA 3QGZA 1GUQA 1ST4A 5EMTA 1HXPA 1Z84A 3O1ZA 4NDGA 5IPEA 3BLAA 6FITA 1AV5A 5IN3A 3SP4A 4NK0A 4EGUA 3IMIA 3N1TA 4EQHA 5BV3A 1RZYA 1KPBA 4QDVA 2FITA 4NJYA 3I4SA 3WO5A 3OMFA 4QEBA 3LB5A 3SPLA 3TW2A 1Y23A 3O1CA 4ZKLA 1KPFA 5ED6A 3L7XA 4INIA 5RHNA 2EO4A 5IPDA 1GUPA 2Q4LA 4NJZA 4ZKVA 3I24A 4NJXA 4XBAA 1EMSA 1KPEA 2Q4HA 3BL9A
chains in the Genus database with same CATH superfamily
4QDEA 4YKLB 3R6FA 2OIKA 3KSVA 2LJWA 4EQEA 3RHNA 1VLRA 3BL7A 5ED3A 1ST0A 3SZQA 1ZWJA 2H39A 4I5TA 1HXQA 1XMLA 5CS2A 4G0AA 1XMMA 5FITA 4ZGLA 1FHIA 3NRDA 3O0MA 3O1XA 1KPAA 4NDFA 4EQGA 4INCA 4RHNA 5IPBA 4NDHA 3SPDA 3OXKA 3ANOA 1KPCA 2R8FA 3N1SA 2POFA 3OHEA 1FITA 3FITA 4NDIA 4FITA 2R7JA 5I2EA 3P0TA 5IPCA 6RHNA 2FHIA 2GU0A 3OJ7A 5I2FA 3QGZA 1GUQA 1ST4A 5EMTA 1HXPA 4G0JA 1Z84A 4I5VA 3O1ZA 4NDGA 5IPEA 3BLAA 6FITA 1AV5A 5IN3A 3SP4A 4NK0A 4EGUA 3IMIA 3N1TA 4EQHA 5BV3A 1RZYA 4I5WA 1KPBA 4QDVA 2FITA 4NJYA 3I4SA 2R7PA 3WO5A 3OMFA 4QEBA 3LB5A 3SPLA 3TW2A 1Y23A 3O1CA 4ZKLA 1KPFA 5ED6A 2R7CA 3L7XA 4INIA 5RHNA 2EO4A 5IPDA 1GUPA 1L9VA 2Q4LA 4NJZA 4ZKVA 3I24A 4NJXA 4XBAA 1EMSA 1KPEA 2Q4HA 3BL9A
chains in the Genus database with same CATH topology
4QDEA 4YKLB 3R6FA 2OIKA 3KSVA 4EQEA 3RHNA 1VLRA 3BL7A 5ED3A 1ST0A 3SZQA 1ZWJA 2H39A 1HXQA 1XMLA 5CS2A 1XMMA 5FITA 4ZGLA 1FHIA 3NRDA 3O0MA 3O1XA 1KPAA 4NDFA 4EQGA 4INCA 4RHNA 5IPBA 4NDHA 3SPDA 3OXKA 3ANOA 1KPCA 3N1SA 3OHEA 1FITA 3FITA 4NDIA 4FITA 5I2EA 3P0TA 5IPCA 6RHNA 2FHIA 3OJ7A 5I2FA 3QGZA 1GUQA 1ST4A 5EMTA 1HXPA 1Z84A 3O1ZA 4NDGA 5IPEA 3BLAA 6FITA 1AV5A 5IN3A 3SP4A 4NK0A 4EGUA 3IMIA 3N1TA 4EQHA 5BV3A 1RZYA 1KPBA 4QDVA 2FITA 4NJYA 3I4SA 3WO5A 3OMFA 4QEBA 3LB5A 3SPLA 3TW2A 1Y23A 3O1CA 4ZKLA 1KPFA 5ED6A 3L7XA 4INIA 5RHNA 2EO4A 5IPDA 1GUPA 2Q4LA 4NJZA 4ZKVA 3I24A 4NJXA 4XBAA 1EMSA 1KPEA 2Q4HA 3BL9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4QDE A;  4YKL B;  3R6F A;  2OIK A;  3KSV A;  4EQE A;  3RHN A;  1VLR A;  3BL7 A;  5ED3 A;  1ST0 A;  3SZQ A;  1ZWJ A;  2H39 A;  1HXQ A;  1XML A;  5CS2 A;  1XMM A;  5FIT A;  4ZGL A;  1FHI A;  3NRD A;  3O0M A;  3O1X A;  1KPA A;  4NDF A;  4EQG A;  4INC A;  4RHN A;  5IPB A;  4NDH A;  3SPD A;  3OXK A;  3ANO A;  1KPC A;  3N1S A;  3OHE A;  1FIT A;  3FIT A;  4NDI A;  4FIT A;  5I2E A;  3P0T A;  5IPC A;  6RHN A;  2FHI A;  3OJ7 A;  5I2F A;  3QGZ A;  1GUQ A;  1ST4 A;  5EMT A;  1HXP A;  1Z84 A;  3O1Z A;  4NDG A;  5IPE A;  3BLA A;  6FIT A;  1AV5 A;  5IN3 A;  3SP4 A;  4NK0 A;  4EGU A;  3IMI A;  3N1T A;  4EQH A;  5BV3 A;  1RZY A;  1KPB A;  4QDV A;  2FIT A;  4NJY A;  3I4S A;  3WO5 A;  3OMF A;  4QEB A;  3LB5 A;  3SPL A;  3TW2 A;  1Y23 A;  3O1C A;  4ZKL A;  1KPF A;  5ED6 A;  3L7X A;  4INI A;  5RHN A;  2EO4 A;  5IPD A;  1GUP A;  2Q4L A;  4NJZ A;  4ZKV A;  3I24 A;  4NJX A;  4XBA A;  1EMS A;  1KPE A;  2Q4H A;  3BL9 A; 
#chains in the Genus database with same CATH topology
 4QDE A;  4YKL B;  3R6F A;  2OIK A;  3KSV A;  2LJW A;  4EQE A;  3RHN A;  1VLR A;  3BL7 A;  5ED3 A;  1ST0 A;  3SZQ A;  1ZWJ A;  2H39 A;  4I5T A;  1HXQ A;  1XML A;  5CS2 A;  4G0A A;  1XMM A;  5FIT A;  4ZGL A;  1FHI A;  3NRD A;  3O0M A;  3O1X A;  1KPA A;  4NDF A;  4EQG A;  4INC A;  4RHN A;  5IPB A;  4NDH A;  3SPD A;  3OXK A;  3ANO A;  1KPC A;  2R8F A;  3N1S A;  2POF A;  3OHE A;  1FIT A;  3FIT A;  4NDI A;  4FIT A;  2R7J A;  5I2E A;  3P0T A;  5IPC A;  6RHN A;  2FHI A;  2GU0 A;  3OJ7 A;  5I2F A;  3QGZ A;  1GUQ A;  1ST4 A;  5EMT A;  1HXP A;  4G0J A;  1Z84 A;  4I5V A;  3O1Z A;  4NDG A;  5IPE A;  3BLA A;  6FIT A;  1AV5 A;  5IN3 A;  3SP4 A;  4NK0 A;  4EGU A;  3IMI A;  3N1T A;  4EQH A;  5BV3 A;  1RZY A;  4I5W A;  1KPB A;  4QDV A;  2FIT A;  4NJY A;  3I4S A;  2R7P A;  3WO5 A;  3OMF A;  4QEB A;  3LB5 A;  3SPL A;  3TW2 A;  1Y23 A;  3O1C A;  4ZKL A;  1KPF A;  5ED6 A;  2R7C A;  3L7X A;  4INI A;  5RHN A;  2EO4 A;  5IPD A;  1GUP A;  1L9V A;  2Q4L A;  4NJZ A;  4ZKV A;  3I24 A;  4NJX A;  4XBA A;  1EMS A;  1KPE A;  2Q4H A;  3BL9 A; 
#chains in the Genus database with same CATH homology
 4QDE A;  4YKL B;  3R6F A;  2OIK A;  3KSV A;  4EQE A;  3RHN A;  1VLR A;  3BL7 A;  5ED3 A;  1ST0 A;  3SZQ A;  1ZWJ A;  2H39 A;  1HXQ A;  1XML A;  5CS2 A;  1XMM A;  5FIT A;  4ZGL A;  1FHI A;  3NRD A;  3O0M A;  3O1X A;  1KPA A;  4NDF A;  4EQG A;  4INC A;  4RHN A;  5IPB A;  4NDH A;  3SPD A;  3OXK A;  3ANO A;  1KPC A;  3N1S A;  3OHE A;  1FIT A;  3FIT A;  4NDI A;  4FIT A;  5I2E A;  3P0T A;  5IPC A;  6RHN A;  2FHI A;  3OJ7 A;  5I2F A;  3QGZ A;  1GUQ A;  1ST4 A;  5EMT A;  1HXP A;  1Z84 A;  3O1Z A;  4NDG A;  5IPE A;  3BLA A;  6FIT A;  1AV5 A;  5IN3 A;  3SP4 A;  4NK0 A;  4EGU A;  3IMI A;  3N1T A;  4EQH A;  5BV3 A;  1RZY A;  1KPB A;  4QDV A;  2FIT A;  4NJY A;  3I4S A;  3WO5 A;  3OMF A;  4QEB A;  3LB5 A;  3SPL A;  3TW2 A;  1Y23 A;  3O1C A;  4ZKL A;  1KPF A;  5ED6 A;  3L7X A;  4INI A;  5RHN A;  2EO4 A;  5IPD A;  1GUP A;  2Q4L A;  4NJZ A;  4ZKV A;  3I24 A;  4NJX A;  4XBA A;  1EMS A;  1KPE A;  2Q4H A;  3BL9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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