3I56H

Co-crystal structure of triacetyloleandomcyin bound to the large ribosomal subunit
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
171
structure length
160
Chain Sequence
KPASMYRDIDKPAYTRREYITGIPGSKIAQHKMGRKQKDADDYPVQISLIVEETVQLRHGSLEASRLSANRHLIKELGEEGDYKMTLRKFPHQVLRENKDGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRIKVERGEEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome/antibiotic
molecule keywords 50S ribosomal protein L2P
publication title Structures of triacetyloleandomycin and mycalamide A bind to the large ribosomal subunit of Haloarcula marismortui.
pubmed doi rcsb
total genus 34
structure length 160
sequence length 171
ec nomenclature
pdb deposition date 2009-07-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
H PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 3i56H00
3CCJH 3I55H 5H1SO 1S72H 3CCVH 5AN9F 1YIJH 5MLCO 3CMEH 1VQ4H 1M1KJ 3CCRH 3CCLH 2QA4H 2OTJH 1VQOH 1VQMH 1VQ7H 5DM7J 1K8AJ 3CD6H 5JVGJ 3CPWH 4IOCJ 4IOAJ 1VQNH 1Q82J 1KC8J 1WKIA 1JJ2H 1KQSH 4U67J 5GAGN 2ZJQJ 1VQ5H 4WF9J 4WCEJ 4UY8M 1VQKH 3CCEH 1VQ8H 4WFAJ 3CMAH 4WFNJ 5GAEN 1QVFH 1YJWH 4WFBJ 3CC2H 1VQPH 3G6EH 1Q81J 2OTLH 2ZJPJ 2ZJRJ 1VQLH 5JVHJ 1VQ9H 1VQ6H 1Q86J 1KD1J 3CCUH 1YI2H 4IO9J 1YITH 5HL7J 1YJNH 5DM6J 1Y69K 1W2BH 3CCSH 3OW2H 1Q7YJ 3PIPJ 3CC4H 1QVGH 1YHQH 5GADN 3CCQH 3CC7H 3PIOJ 3DLLJ 1N8RJ 1YJ9H 1K73J 3J7ZM 3CXCH 3I56H 3G4SH 2PA2A 1NJIJ 1M90J 3G71H 3CF5J 3CCMH 2QEXH 5GAHN 1K9MJ
chains in the Genus database with same CATH superfamily
3CCJH 3I55H 1FFVB 5EP8A 2B7QA 4GA5A 5H1SO 1NVJA 1S72H 3CCVH 3C2FA 2OMDA 5AN9F 3B9JC 3C2VA 1YIJH 5MLCO 1FIQC 3AMZA 1VQ4H 3CMEH 4C80A 4GA6A 3NRZC 1M1KJ 3CCRH 5EY3A 5HULA 3CCLH 3FAHA 1QAPA 2QA4H 2OTJH 1FMAE 3ETRC 1VQOH 1VQMH 1VQ7H 2W3RB 5DM7J 1K8AJ 2WK6A 3NS1C 3CD6H 5JVGJ 1NVIE 1SIJA 3CPWH 2WP4A 4IOCJ 1FO4A 1JRPB 4IOAJ 1VQNH 1Q82J 2WK5A 3WO1A 1KC8J 1O4UA 1N63B 4KWWA 3C2EA 1SB3A 1WKIA 1JJ2H 1KQSH 1N62B 4U67J 5GAGN 2ZJQJ 1VQ5H 4WF9J 1V97A 2B7NA 4WCEJ 3NVWC 4UY8M 3L4PA 1VQKH 2J0FA 2B7PA 2DSJA 2W54B 4EAFA 3CCEH 1VQ8H 4WFAJ 5HUPA 3WNZA 4YEKA 3C2RA 3NVVC 5HUOA 3CMAH 1FFUB 1WYGA 4WFNJ 2JBMA 5GAEN 1QVFH 1YJWH 5AYYA 4ZOHA 4WFBJ 4US9A 1YTDA 3CC2H 1VQPH 3G6EH 1Q81J 2OTLH 5MPOC 1VDVA 3RPFA 4US8A 2ZJPJ 2TPTA 3C2OA 1N5XA 2I1OA 1QPQA 4XR5A 1VQLH 3VMMA 5JVHJ 2ZJRJ 2W3SB 1VQ9H 1VQ6H 1YTEA 1Q86J 5AYXA 3L0GA 1KD1J 3CCUH 1YI2H 4IO9J 2W55B 5HL7J 1YITH 1YJNH 3FC4A 4USAA 1AZYA 4KWVA 2QIEA 2E3TA 3BIIE 3WO0A 4C7ZA 1DGJA 4I9AA 3H5QA 2Q5WE 1ZXIB 5DM6J 1FM0E 1YTKA 1UOUA 3GNNA 4EADA 1Y69K 1W2BH 4GA4A 3EUB4 4YYYA 3CCSH 1JROB 4AP8A 3OW2H 1Q7YJ 1OTPA 1QPRA 4C7YA 3PIPJ 3CC4H 5AYZA 3TQVA 1QVGH 3AM9A 1YHQH 5GADN 3CCQH 2I14A 1QPOA 3CC7H 3PIOJ 3DLLJ 1N61B 1N5WB 1N8RJ 1BRWA 1VLBA 1YJ9H 1K73J 1RM6A 1QPNA 1N60B 1X1OA 3J7ZM 3CXCH 3NVYC 3I56H 3G4SH 2PA2A 1NJIJ 3AN1A 1M90J 3SR6C 3G71H 3NVZC 3PAJA 3CF5J 4X46A 4LHMA 3CCMH 2QEXH 5GAHN 1K9MJ
chains in the Genus database with same CATH topology
3CCJH 3I55H 5H1SO 1S72H 3CCVH 5AN9F 1YIJH 5MLCO 3CMEH 1VQ4H 1M1KJ 3CCRH 3CCLH 2QA4H 2OTJH 1VQOH 1VQMH 1VQ7H 5DM7J 1K8AJ 3CD6H 5JVGJ 3CPWH 4IOCJ 4IOAJ 1VQNH 1Q82J 1KC8J 1WKIA 1JJ2H 1KQSH 4U67J 5GAGN 2ZJQJ 1VQ5H 4WF9J 4WCEJ 4UY8M 1VQKH 3CCEH 1VQ8H 4WFAJ 3CMAH 4WFNJ 5GAEN 1QVFH 1YJWH 4WFBJ 3CC2H 1VQPH 3G6EH 1Q81J 2OTLH 2ZJPJ 2ZJRJ 1VQLH 5JVHJ 1VQ9H 1VQ6H 1Q86J 1KD1J 3CCUH 1YI2H 4IO9J 1YITH 5HL7J 1YJNH 5DM6J 1Y69K 1W2BH 3CCSH 3OW2H 1Q7YJ 3PIPJ 3CC4H 1QVGH 1YHQH 5GADN 3CCQH 3CC7H 3PIOJ 3DLLJ 1N8RJ 1YJ9H 1K73J 3J7ZM 3CXCH 3I56H 3G4SH 2PA2A 1NJIJ 1M90J 3G71H 3CF5J 3CCMH 2QEXH 5GAHN 1K9MJ
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CCJ H;  3I55 H;  5H1S O;  1S72 H;  3CCV H;  5AN9 F;  1YIJ H;  5MLC O;  3CME H;  1VQ4 H;  1M1K J;  3CCR H;  3CCL H;  2QA4 H;  2OTJ H;  1VQO H;  1VQM H;  1VQ7 H;  5DM7 J;  1K8A J;  3CD6 H;  5JVG J;  3CPW H;  4IOC J;  4IOA J;  1VQN H;  1Q82 J;  1KC8 J;  1WKI A;  1JJ2 H;  1KQS H;  4U67 J;  5GAG N;  2ZJQ J;  1VQ5 H;  4WF9 J;  4WCE J;  4UY8 M;  1VQK H;  3CCE H;  1VQ8 H;  4WFA J;  3CMA H;  4WFN J;  5GAE N;  1QVF H;  1YJW H;  4WFB J;  3CC2 H;  1VQP H;  3G6E H;  1Q81 J;  2OTL H;  2ZJP J;  2ZJR J;  1VQL H;  5JVH J;  1VQ9 H;  1VQ6 H;  1Q86 J;  1KD1 J;  3CCU H;  1YI2 H;  4IO9 J;  1YIT H;  5HL7 J;  1YJN H;  5DM6 J;  1Y69 K;  1W2B H;  3CCS H;  3OW2 H;  1Q7Y J;  3PIP J;  3CC4 H;  1QVG H;  1YHQ H;  5GAD N;  3CCQ H;  3CC7 H;  3PIO J;  3DLL J;  1N8R J;  1YJ9 H;  1K73 J;  3J7Z M;  3CXC H;  3I56 H;  3G4S H;  2PA2 A;  1NJI J;  1M90 J;  3G71 H;  3CF5 J;  3CCM H;  2QEX H;  5GAH N;  1K9M J; 
#chains in the Genus database with same CATH topology
 3CCJ H;  3I55 H;  1FFV B;  5EP8 A;  2B7Q A;  4GA5 A;  5H1S O;  1NVJ A;  1S72 H;  3CCV H;  3C2F A;  2OMD A;  5AN9 F;  3B9J C;  3C2V A;  1YIJ H;  5MLC O;  1FIQ C;  3AMZ A;  1VQ4 H;  3CME H;  4C80 A;  4GA6 A;  3NRZ C;  1M1K J;  3CCR H;  5EY3 A;  5HUL A;  3CCL H;  3FAH A;  1QAP A;  2QA4 H;  2OTJ H;  1FMA E;  3ETR C;  1VQO H;  1VQM H;  1VQ7 H;  2W3R B;  5DM7 J;  1K8A J;  2WK6 A;  3NS1 C;  3CD6 H;  5JVG J;  1NVI E;  1SIJ A;  3CPW H;  2WP4 A;  4IOC J;  1FO4 A;  1JRP B;  4IOA J;  1VQN H;  1Q82 J;  2WK5 A;  3WO1 A;  1KC8 J;  1O4U A;  1N63 B;  4KWW A;  3C2E A;  1SB3 A;  1WKI A;  1JJ2 H;  1KQS H;  1N62 B;  4U67 J;  5GAG N;  2ZJQ J;  1VQ5 H;  4WF9 J;  1V97 A;  2B7N A;  4WCE J;  3NVW C;  4UY8 M;  3L4P A;  1VQK H;  2J0F A;  2B7P A;  2DSJ A;  2W54 B;  4EAF A;  3CCE H;  1VQ8 H;  4WFA J;  5HUP A;  3WNZ A;  4YEK A;  3C2R A;  3NVV C;  5HUO A;  3CMA H;  1FFU B;  1WYG A;  4WFN J;  2JBM A;  5GAE N;  1QVF H;  1YJW H;  5AYY A;  4ZOH A;  4WFB J;  4US9 A;  1YTD A;  3CC2 H;  1VQP H;  3G6E H;  1Q81 J;  2OTL H;  5MPO C;  1VDV A;  3RPF A;  4US8 A;  2ZJP J;  2TPT A;  3C2O A;  1N5X A;  2I1O A;  1QPQ A;  4XR5 A;  1VQL H;  3VMM A;  5JVH J;  2ZJR J;  2W3S B;  1VQ9 H;  1VQ6 H;  1YTE A;  1Q86 J;  5AYX A;  3L0G A;  1KD1 J;  3CCU H;  1YI2 H;  4IO9 J;  2W55 B;  5HL7 J;  1YIT H;  1YJN H;  3FC4 A;  4USA A;  1AZY A;  4KWV A;  2QIE A;  2E3T A;  3BII E;  3WO0 A;  4C7Z A;  1DGJ A;  4I9A A;  3H5Q A;  2Q5W E;  1ZXI B;  5DM6 J;  1FM0 E;  1YTK A;  1UOU A;  3GNN A;  4EAD A;  1Y69 K;  1W2B H;  4GA4 A;  3EUB 4;  4YYY A;  3CCS H;  1JRO B;  4AP8 A;  3OW2 H;  1Q7Y J;  1OTP A;  1QPR A;  4C7Y A;  3PIP J;  3CC4 H;  5AYZ A;  3TQV A;  1QVG H;  3AM9 A;  1YHQ H;  5GAD N;  3CCQ H;  2I14 A;  1QPO A;  3CC7 H;  3PIO J;  3DLL J;  1N61 B;  1N5W B;  1N8R J;  1BRW A;  1VLB A;  1YJ9 H;  1K73 J;  1RM6 A;  1QPN A;  1N60 B;  1X1O A;  3J7Z M;  3CXC H;  3NVY C;  3I56 H;  3G4S H;  2PA2 A;  1NJI J;  3AN1 A;  1M90 J;  3SR6 C;  3G71 H;  3NVZ C;  3PAJ A;  3CF5 J;  4X46 A;  4LHM A;  3CCM H;  2QEX H;  5GAH N;  1K9M J; 
#chains in the Genus database with same CATH homology
 3CCJ H;  3I55 H;  5H1S O;  1S72 H;  3CCV H;  5AN9 F;  1YIJ H;  5MLC O;  3CME H;  1VQ4 H;  1M1K J;  3CCR H;  3CCL H;  2QA4 H;  2OTJ H;  1VQO H;  1VQM H;  1VQ7 H;  5DM7 J;  1K8A J;  3CD6 H;  5JVG J;  3CPW H;  4IOC J;  4IOA J;  1VQN H;  1Q82 J;  1KC8 J;  1WKI A;  1JJ2 H;  1KQS H;  4U67 J;  5GAG N;  2ZJQ J;  1VQ5 H;  4WF9 J;  4WCE J;  4UY8 M;  1VQK H;  3CCE H;  1VQ8 H;  4WFA J;  3CMA H;  4WFN J;  5GAE N;  1QVF H;  1YJW H;  4WFB J;  3CC2 H;  1VQP H;  3G6E H;  1Q81 J;  2OTL H;  2ZJP J;  2ZJR J;  1VQL H;  5JVH J;  1VQ9 H;  1VQ6 H;  1Q86 J;  1KD1 J;  3CCU H;  1YI2 H;  4IO9 J;  1YIT H;  5HL7 J;  1YJN H;  5DM6 J;  1Y69 K;  1W2B H;  3CCS H;  3OW2 H;  1Q7Y J;  3PIP J;  3CC4 H;  1QVG H;  1YHQ H;  5GAD N;  3CCQ H;  3CC7 H;  3PIO J;  3DLL J;  1N8R J;  1YJ9 H;  1K73 J;  3J7Z M;  3CXC H;  3I56 H;  3G4S H;  2PA2 A;  1NJI J;  1M90 J;  3G71 H;  3CF5 J;  3CCM H;  2QEX H;  5GAH N;  1K9M J; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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