The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
33
|
sequence length |
157
|
structure length |
157
|
Chain Sequence |
PKLDLDSIERRIGSVYPGRLNAAMDGRSSLRLGDAGGLSQFGVNLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDDQGEHPMVPGDCAAFPAGDPNGHQFVNRTDAPATFLVVGTRTPTETAYYSDMDMMVKQDASGFAFTRKDGSPLTADQIG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of sugar phosphate isomerase from a cupin superfamily SPO2919 from Silicibacter pomeroyi (YP_168127.1) from SILICIBACTER POMEROYI DSS-3 at 2.30 A resolution
rcsb |
| source organism |
Ruegeria pomeroyi dss-3
|
| molecule tags |
Isomerase
|
| molecule keywords |
sugar phosphate isomerase
|
| total genus |
33
|
| structure length |
157
|
| sequence length |
157
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2009-07-08 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF07883 | Cupin_2 | Cupin domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Sandwich | Jelly Rolls | Jelly Rolls |
