3I9TA

Crystal structure of the rat heme oxygenase (ho-1) in complex with heme binding dithiothreitol (dtt)
Total Genus 89
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
89
sequence length
212
structure length
212
Chain Sequence
QDLSEALKEATKEVHIRAENSEFMRNFQKGQVSREGFKLVMASLYHIYTALEEEIERNKQNPVYAPLYFPEELHRRAALEQDMAFWYGPHWQEAIPYTPATQHYVKRLHEVGGTHPELLVAHAYTRYLGDLSGGQVLKKIAQKAMALPSSGEGLAFFTFPSIDNPTKFKQLYRARMNTLEMTPEVKHRVTEEAKTAFLLNIELFEELQALLT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Heme oxygenase 1
publication title Dioxygen activation for the self-degradation of heme: reaction mechanism and regulation of heme oxygenase.
pubmed doi rcsb
source organism Rattus norvegicus
total genus 89
structure length 212
sequence length 212
ec nomenclature ec 1.14.14.18: Heme oxygenase (biliverdin-producing).
pdb deposition date 2009-07-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01126 Heme_oxygenase Heme oxygenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.910.10 Mainly Alpha Up-down Bundle Heme Oxygenase; Chain A Heme oxygenase-like 3i9tA00
1J02A 1XK1A 1XK2A 4G8UA 1WNWA 1UDDA 1OYKA 1IVJA 1XJZA 4G99A 3MVUA 1OZRA 4NY7A 2QPPA 3TGMA 3CZYA 2Z68A 2GM7A 4WWJA 2Q32A 2GM8A 1TO9B 3DDEA 1IX4A 3HNHA 3I8RA 4G8WA 5BTQA 1TYHA 1N45A 3IBXA 1UBBA 4GPHA 1P3UA 1WOWA 3RM5A 1WOXA 3I9UA 1P3VA 4G7PA 2ZVUA 3K4FA 2DY5A 2E7EA 4GPCA 4WMHA 1WZDA 4G7UA 3B5PA 1N3UA 1YAFA 3BJDA 2RGZA 3OQLA 1WE1A 4FN6A 1WNVA 1WZFA 2Q4XA 2A2MA 1SK7A 4G7TA 1J2CA 1WNXA 1XK0A 1P3TA 1TWNA 2RD3A 2F2GA 1WWMA 1S13A 1OTVA 3NO6A 1OTWA 1DVGA 3I9TA 1DVEA 1TWRA 4GPFA 3HLXA 1IX3A 4G98A 1OZLA 1RCWA 1WOVA 1WZGA 4LQXA 1ULXA 1Z72A 4RAJA 1YAKA 1RTWA 1T5PA 2A2OA 1S8CA 1V8XA 1XK3A 4WD4A 3MOOA 3HMLA 1VGIA 1J77A 1IW0A 1NI6A 1IRMA 4G8PA 1OYLA 1IW1A 3HOKA 1TO9A 2A6BA 4G7LA 2QZCA 1OZEA 4WWZA 4MECA 3B5OA 2QCXA 4GOHA 4WX0A 1OZWA
chains in the Genus database with same CATH superfamily
1J02A 1XK1A 1XK2A 4G8UA 1WNWA 1UDDA 1OYKA 1IVJA 1XJZA 4G99A 2LCUA 1OZRA 3MVUA 4NY7A 2QPPA 3TGMA 3CZYA 2Z68A 2GM7A 4WWJA 2Q32A 2GM8A 1TO9B 3DDEA 1IX4A 3HNHA 3I8RA 4G8WA 5BTQA 1TYHA 1N45A 3IBXA 1UBBA 4GPHA 1P3UA 1WOWA 3RM5A 1WOXA 3I9UA 1P3VA 4G7PA 2ZVUA 3K4FA 2DY5A 2E7EA 4GPCA 4WMHA 1WZDA 4G7UA 3B5PA 1N3UA 1YAFA 3BJDA 2RGZA 3OQLA 1WE1A 4FN6A 1WNVA 1WZFA 2Q4XA 2A2MA 1SK7A 4G7TA 1J2CA 1WNXA 1XK0A 1P3TA 1TWNA 2RD3A 2F2GA 1WWMA 1S13A 1OTVA 3NO6A 1OTWA 1DVGA 3I9TA 1DVEA 1TWRA 4GPFA 3HLXA 1IX3A 4G98A 1OZLA 1RCWA 1WOVA 1WZGA 4LQXA 1ULXA 1Z72A 4RAJA 1YAKA 1RTWA 1T5PA 2A2OA 1S8CA 1V8XA 1XK3A 4WD4A 3MOOA 3HMLA 1VGIA 1J77A 1IW0A 1NI6A 1IRMA 4G8PA 1OYLA 1IW1A 3HOKA 1TO9A 2A6BA 4G7LA 2QZCA 1OZEA 4WWZA 4MECA 3B5OA 2QCXA 4GOHA 4WX0A 1OZWA
chains in the Genus database with same CATH topology
1J02A 1XK1A 1XK2A 4G8UA 1WNWA 1UDDA 1OYKA 1IVJA 1XJZA 4G99A 3MVUA 1OZRA 4NY7A 2QPPA 3TGMA 3CZYA 2Z68A 2GM7A 4WWJA 2Q32A 2GM8A 1TO9B 3DDEA 1IX4A 3HNHA 3I8RA 4G8WA 5BTQA 1TYHA 1N45A 3IBXA 1UBBA 4GPHA 1P3UA 1WOWA 3RM5A 1WOXA 3I9UA 1P3VA 4G7PA 2ZVUA 3K4FA 2DY5A 2E7EA 4GPCA 4WMHA 1WZDA 4G7UA 3B5PA 1N3UA 1YAFA 3BJDA 2RGZA 3OQLA 1WE1A 4FN6A 1WNVA 1WZFA 2Q4XA 2A2MA 1SK7A 4G7TA 1J2CA 1WNXA 1XK0A 1P3TA 1TWNA 2RD3A 2F2GA 1WWMA 1S13A 1OTVA 3NO6A 1OTWA 1DVGA 3I9TA 1DVEA 1TWRA 4GPFA 3HLXA 1IX3A 4G98A 1OZLA 1RCWA 1WOVA 1WZGA 4LQXA 1ULXA 1Z72A 4RAJA 1YAKA 1RTWA 1T5PA 2A2OA 1S8CA 1V8XA 1XK3A 4WD4A 3MOOA 3HMLA 1VGIA 1J77A 1IW0A 1NI6A 1IRMA 4G8PA 1OYLA 1IW1A 3HOKA 1TO9A 2A6BA 4G7LA 2QZCA 1OZEA 4WWZA 4MECA 3B5OA 2QCXA 4GOHA 4WX0A 1OZWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1J02 A;  1XK1 A;  1XK2 A;  4G8U A;  1WNW A;  1UDD A;  1OYK A;  1IVJ A;  1XJZ A;  4G99 A;  3MVU A;  1OZR A;  4NY7 A;  2QPP A;  3TGM A;  3CZY A;  2Z68 A;  2GM7 A;  4WWJ A;  2Q32 A;  2GM8 A;  1TO9 B;  3DDE A;  1IX4 A;  3HNH A;  3I8R A;  4G8W A;  5BTQ A;  1TYH A;  1N45 A;  3IBX A;  1UBB A;  4GPH A;  1P3U A;  1WOW A;  3RM5 A;  1WOX A;  3I9U A;  1P3V A;  4G7P A;  2ZVU A;  3K4F A;  2DY5 A;  2E7E A;  4GPC A;  4WMH A;  1WZD A;  4G7U A;  3B5P A;  1N3U A;  1YAF A;  3BJD A;  2RGZ A;  3OQL A;  1WE1 A;  4FN6 A;  1WNV A;  1WZF A;  2Q4X A;  2A2M A;  1SK7 A;  4G7T A;  1J2C A;  1WNX A;  1XK0 A;  1P3T A;  1TWN A;  2RD3 A;  2F2G A;  1WWM A;  1S13 A;  1OTV A;  3NO6 A;  1OTW A;  1DVG A;  3I9T A;  1DVE A;  1TWR A;  4GPF A;  3HLX A;  1IX3 A;  4G98 A;  1OZL A;  1RCW A;  1WOV A;  1WZG A;  4LQX A;  1ULX A;  1Z72 A;  4RAJ A;  1YAK A;  1RTW A;  1T5P A;  2A2O A;  1S8C A;  1V8X A;  1XK3 A;  4WD4 A;  3MOO A;  3HML A;  1VGI A;  1J77 A;  1IW0 A;  1NI6 A;  1IRM A;  4G8P A;  1OYL A;  1IW1 A;  3HOK A;  1TO9 A;  2A6B A;  4G7L A;  2QZC A;  1OZE A;  4WWZ A;  4MEC A;  3B5O A;  2QCX A;  4GOH A;  4WX0 A;  1OZW A; 
#chains in the Genus database with same CATH topology
 1J02 A;  1XK1 A;  1XK2 A;  4G8U A;  1WNW A;  1UDD A;  1OYK A;  1IVJ A;  1XJZ A;  4G99 A;  2LCU A;  1OZR A;  3MVU A;  4NY7 A;  2QPP A;  3TGM A;  3CZY A;  2Z68 A;  2GM7 A;  4WWJ A;  2Q32 A;  2GM8 A;  1TO9 B;  3DDE A;  1IX4 A;  3HNH A;  3I8R A;  4G8W A;  5BTQ A;  1TYH A;  1N45 A;  3IBX A;  1UBB A;  4GPH A;  1P3U A;  1WOW A;  3RM5 A;  1WOX A;  3I9U A;  1P3V A;  4G7P A;  2ZVU A;  3K4F A;  2DY5 A;  2E7E A;  4GPC A;  4WMH A;  1WZD A;  4G7U A;  3B5P A;  1N3U A;  1YAF A;  3BJD A;  2RGZ A;  3OQL A;  1WE1 A;  4FN6 A;  1WNV A;  1WZF A;  2Q4X A;  2A2M A;  1SK7 A;  4G7T A;  1J2C A;  1WNX A;  1XK0 A;  1P3T A;  1TWN A;  2RD3 A;  2F2G A;  1WWM A;  1S13 A;  1OTV A;  3NO6 A;  1OTW A;  1DVG A;  3I9T A;  1DVE A;  1TWR A;  4GPF A;  3HLX A;  1IX3 A;  4G98 A;  1OZL A;  1RCW A;  1WOV A;  1WZG A;  4LQX A;  1ULX A;  1Z72 A;  4RAJ A;  1YAK A;  1RTW A;  1T5P A;  2A2O A;  1S8C A;  1V8X A;  1XK3 A;  4WD4 A;  3MOO A;  3HML A;  1VGI A;  1J77 A;  1IW0 A;  1NI6 A;  1IRM A;  4G8P A;  1OYL A;  1IW1 A;  3HOK A;  1TO9 A;  2A6B A;  4G7L A;  2QZC A;  1OZE A;  4WWZ A;  4MEC A;  3B5O A;  2QCX A;  4GOH A;  4WX0 A;  1OZW A; 
#chains in the Genus database with same CATH homology
 1J02 A;  1XK1 A;  1XK2 A;  4G8U A;  1WNW A;  1UDD A;  1OYK A;  1IVJ A;  1XJZ A;  4G99 A;  3MVU A;  1OZR A;  4NY7 A;  2QPP A;  3TGM A;  3CZY A;  2Z68 A;  2GM7 A;  4WWJ A;  2Q32 A;  2GM8 A;  1TO9 B;  3DDE A;  1IX4 A;  3HNH A;  3I8R A;  4G8W A;  5BTQ A;  1TYH A;  1N45 A;  3IBX A;  1UBB A;  4GPH A;  1P3U A;  1WOW A;  3RM5 A;  1WOX A;  3I9U A;  1P3V A;  4G7P A;  2ZVU A;  3K4F A;  2DY5 A;  2E7E A;  4GPC A;  4WMH A;  1WZD A;  4G7U A;  3B5P A;  1N3U A;  1YAF A;  3BJD A;  2RGZ A;  3OQL A;  1WE1 A;  4FN6 A;  1WNV A;  1WZF A;  2Q4X A;  2A2M A;  1SK7 A;  4G7T A;  1J2C A;  1WNX A;  1XK0 A;  1P3T A;  1TWN A;  2RD3 A;  2F2G A;  1WWM A;  1S13 A;  1OTV A;  3NO6 A;  1OTW A;  1DVG A;  3I9T A;  1DVE A;  1TWR A;  4GPF A;  3HLX A;  1IX3 A;  4G98 A;  1OZL A;  1RCW A;  1WOV A;  1WZG A;  4LQX A;  1ULX A;  1Z72 A;  4RAJ A;  1YAK A;  1RTW A;  1T5P A;  2A2O A;  1S8C A;  1V8X A;  1XK3 A;  4WD4 A;  3MOO A;  3HML A;  1VGI A;  1J77 A;  1IW0 A;  1NI6 A;  1IRM A;  4G8P A;  1OYL A;  1IW1 A;  3HOK A;  1TO9 A;  2A6B A;  4G7L A;  2QZC A;  1OZE A;  4WWZ A;  4MEC A;  3B5O A;  2QCX A;  4GOH A;  4WX0 A;  1OZW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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