3IB8A

Crystal structure of full length rv0805 in complex with 5'-amp
Total Genus 90
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
90
sequence length
295
structure length
295
Chain Sequence
b'LRAAEHPRPDYVLLHISDTHLIGGDRRLYGAVDADDRLGELLEQLNQSGLRPDAIVFTGDLADKGEPAAYRKLRGLVEPFAAQLGAELVWVMGNHDDRAELRKFLLDEAPSMAPLDRVCMIDGLRIIVLDTSVPGHHHGEIRASQLGWLAEELATPAPDGTILALHHPPIPSVLDMAVTVELRDQAALGRVLRGTDVRAILAGHLHYSTNATFVGIPVSVASATCYTQDLTVAAGGTRGRDGAQGCNLVHVYPDTVVHSVIPLGGGETVGTFVSPGQARRKIAESGIFIEPSRRD'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title A mycobacterial cyclic AMP phosphodiesterase that moonlights as a modifier of cell wall permeability
pubmed doi rcsb
molecule keywords Icc protein
source organism Mycobacterium tuberculosis
molecule tags Hydrolase
total genus 90
structure length 295
sequence length 295
ec nomenclature ec 3.1.4.53: 3',5'-cyclic-AMP phosphodiesterase.
pdb deposition date 2009-07-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 3ib8A00
4MP0A 3K7VC 3THOB 1T71A 1S95A 3RQZA 4B2OA 4H1YP 4V0VA 2CV9A 3E7BA 5F3WA 2Q8UA 1XZWA 1JK7A 1XM7A 3DW8C 4ZVZA 4O24A 1OI8A 1SU1A 2HYPA 3H67A 3P71C 4I5LC 5INBA 4ORBA 5B8IA 2IE4C 3EGHA 4LTYA 3E7AA 2USHA 2O8GA 4J6OA 5EQVA 3ICFA 3H69A 4I5NC 5JPEA 1S8EA 1NNWA 3H64A 2A22A 1USHA 4O5GA 1QHWA 4H1SA 2WDEA 3DSCA 1HP1A 3C5WC 5DNYA 4YKEA 5IOHA 1T70A 3IVEA 2O8AA 2QJCA 3PSNA 4F0ZA 1OIDA 2NYLC 4MOVA 1Z2XA 3IB7A 2BQ8X 4FBWA 3FGAC 4H2GA 5HPEA 3EGGA 2KKNA 5JPFA 1IT6A 4DT2A 2HYOA 1AUIA 4TUIA 3RL4A 2WDFA 3H61A 2Z1AA 2NPPC 4O4KA 3RL3A 3QFKA 2WDCA 3K7WC 1W24A 1TCOA 4LU9A 2NXFA 1G5BA 4UT2A 1HO5A 1MF8A 2IE3C 3QFNA 1OIEA 4H2IA 4ORAA 4KBPA 3THNA 3AUZA 3TGHA 4IL1A 3QG5C 3T1IA 1S3LA 3DSDA 1FJMA 4HD0A 4UWQA 4TUGA 3PSOA 4H2FA 3IVDA 2NYMC 4UT3B 2IAEC 2BCDA 5C1VA 3ZU0A 3QFMA 3H62B 4V0WA 1U32A 4NZVA 2Z06A 4FCXA 2BDXA 4UT3A 1UTEA 2QFRA 3C9FA 4XPNA 1Z2WA 2XMOA 4KKZA 4DHLA 4DSYA 2QFPA 3H68A 2YVTA 4IYPC 4ZX2A 5J28A 3AV0A 4Q7FA 2DFJA 4V0XA 4H2BA 1KBPA 3ZTVA 3CK2A 3QFOA 4JA7A 5GTUA 2R17A 4LACC 1WARA 3RL5A 4O43A 1II7A 3H66A 3LL8A 2JOGA 2WDDA 1M63A 4FBKA 4FBQA 3H63A 3H60A 4MOYA 3GVEA 3N5UA 3V4YA 1WAO1 1UF3A 3IB8A 1S3MA 3KBPA 4G9JA 4JA9A 4M0VA 2HY1A 3JYFA 5JJTA 1QFCA 4ORCA 2AHDA 2ZBMA 2P6BA 1HPUA 1S70A 1V73A 4WWLA 2Z72A 1S3NA 3HVQA 2GJUA 4OR9A
chains in the Genus database with same CATH superfamily
4MP0A 3K7VC 3THOB 1T71A 1S95A 3RQZA 4B2OA 3D03A 4H1YP 4V0VA 2CV9A 3E7BA 5F3WA 2Q8UA 1XZWA 1JK7A 1XM7A 3DW8C 3E0JA 4ZVZA 4O24A 1OI8A 1SU1A 2HYPA 3H67A 3P71C 4I5LC 5INBA 4ORBA 5B8IA 2DXNA 2IE4C 3EGHA 4LTYA 3E7AA 2USHA 2O8GA 4J6OA 5EQVA 3ICFA 3H69A 4I5NC 5JPEA 1S8EA 1NNWA 3H64A 2A22A 1USHA 2ZO9B 4O5GA 1QHWA 4H1SA 2WDEA 3DSCA 1HP1A 3C5WC 5DNYA 4YKEA 5IOHA 1T70A 3IVEA 2O8AA 2QJCA 3PSNA 4F0ZA 1OIDA 2NYLC 4MOVA 1Z2XA 3IB7A 2BQ8X 4FBWA 3FGAC 4H2GA 5HPEA 3EGGA 2KKNA 5JPFA 1IT6A 4DT2A 2HYOA 1AUIA 4TUIA 3RL4A 2WDFA 3H61A 2Z1AA 2NPPC 4O4KA 3RL3A 3QFKA 2WDCA 3K7WC 1W24A 1TCOA 4LU9A 2NXFA 1G5BA 4UT2A 1HO5A 1MF8A 2IE3C 3QFNA 1OIEA 4H2IA 4ORAA 4KBPA 3THNA 3AUZA 3TGHA 4IL1A 3QG5C 3T1IA 1S3LA 3DSDA 1FJMA 4HD0A 4UWQA 4TUGA 3PSOA 4H2FA 2YEQA 3IVDA 2NYMC 4UT3B 2IAEC 2BCDA 5C1VA 3ZU0A 3FLOA 3QFMA 3H62B 4V0WA 1U32A 4NZVA 2Z06A 4FCXA 2BDXA 4UT3A 1UTEA 2QFRA 3C9FA 4XPNA 1Z2WA 2XMOA 4KKZA 4DHLA 4DSYA 2QFPA 3H68A 2YVTA 4IYPC 4ZX2A 5J28A 3AV0A 2DXLA 4Q7FA 2DFJA 2ZOAA 4V0XA 4H2BA 1KBPA 3ZTVA 3CK2A 3QFOA 4JA7A 5GTUA 2R17A 4LACC 1WARA 3RL5A 4O43A 1II7A 3H66A 3LL8A 2JOGA 2WDDA 1M63A 4FBKA 4FBQA 3H63A 3H60A 4MOYA 3GVEA 3N5UA 3V4YA 1WAO1 1UF3A 3IB8A 1S3MA 3KBPA 4G9JA 4JA9A 4M0VA 2HY1A 3JYFA 5JJTA 1QFCA 4ORCA 2AHDA 2ZBMA 2P6BA 1HPUA 1S70A 1V73A 4WWLA 2Z72A 1S3NA 3HVQA 2GJUA 4OR9A
chains in the Genus database with same CATH topology
4MP0A 3K7VC 3THOB 1T71A 1S95A 3RQZA 4B2OA 3D03A 4H1YP 4V0VA 2CV9A 3E7BA 5F3WA 2Q8UA 1XZWA 1JK7A 1XM7A 3DW8C 3E0JA 4ZVZA 4O24A 1OI8A 1SU1A 2HYPA 3H67A 3P71C 4I5LC 5INBA 4ORBA 5B8IA 2DXNA 2IE4C 3EGHA 4LTYA 3E7AA 2USHA 2O8GA 4J6OA 5EQVA 3ICFA 3H69A 4I5NC 5JPEA 1S8EA 1NNWA 3H64A 2A22A 1USHA 2ZO9B 4O5GA 1QHWA 4H1SA 2WDEA 3DSCA 1HP1A 3C5WC 5DNYA 4YKEA 5IOHA 1T70A 3IVEA 2O8AA 2QJCA 3PSNA 4F0ZA 1OIDA 2NYLC 4MOVA 1Z2XA 3IB7A 2BQ8X 4FBWA 3FGAC 4H2GA 5HPEA 3EGGA 2KKNA 5JPFA 1IT6A 4DT2A 2HYOA 1AUIA 4TUIA 3RL4A 2WDFA 3H61A 2Z1AA 2NPPC 4O4KA 3RL3A 3QFKA 2WDCA 3K7WC 1W24A 1TCOA 4LU9A 2NXFA 1G5BA 4UT2A 1HO5A 1MF8A 2IE3C 3QFNA 1OIEA 4H2IA 4ORAA 4KBPA 3THNA 3AUZA 3TGHA 4IL1A 3QG5C 3T1IA 1S3LA 3DSDA 1FJMA 4HD0A 4UWQA 4TUGA 3PSOA 4H2FA 2YEQA 3IVDA 2NYMC 4UT3B 2IAEC 2BCDA 5C1VA 3ZU0A 3FLOA 3QFMA 3H62B 4V0WA 1U32A 4NZVA 2Z06A 4FCXA 2BDXA 4UT3A 1UTEA 2QFRA 3C9FA 4XPNA 1Z2WA 2XMOA 4KKZA 4DHLA 4DSYA 2QFPA 3H68A 2YVTA 4IYPC 4ZX2A 5J28A 3AV0A 2DXLA 4Q7FA 2DFJA 2ZOAA 4V0XA 4H2BA 1KBPA 3ZTVA 3CK2A 3QFOA 4JA7A 5GTUA 2R17A 4LACC 1WARA 3RL5A 4O43A 1II7A 3H66A 3LL8A 2JOGA 2WDDA 1M63A 4FBKA 4FBQA 3H63A 3H60A 4MOYA 3GVEA 3N5UA 3V4YA 1WAO1 1UF3A 3IB8A 1S3MA 3KBPA 4G9JA 4JA9A 4M0VA 2HY1A 3JYFA 5JJTA 1QFCA 4ORCA 2AHDA 2ZBMA 2P6BA 1HPUA 1S70A 1V73A 4WWLA 2Z72A 1S3NA 3HVQA 2GJUA 4OR9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4MP0 A;  3K7V C;  3THO B;  1T71 A;  1S95 A;  3RQZ A;  4B2O A;  4H1Y P;  4V0V A;  2CV9 A;  3E7B A;  5F3W A;  2Q8U A;  1XZW A;  1JK7 A;  1XM7 A;  3DW8 C;  4ZVZ A;  4O24 A;  1OI8 A;  1SU1 A;  2HYP A;  3H67 A;  3P71 C;  4I5L C;  5INB A;  4ORB A;  5B8I A;  2IE4 C;  3EGH A;  4LTY A;  3E7A A;  2USH A;  2O8G A;  4J6O A;  5EQV A;  3ICF A;  3H69 A;  4I5N C;  5JPE A;  1S8E A;  1NNW A;  3H64 A;  2A22 A;  1USH A;  4O5G A;  1QHW A;  4H1S A;  2WDE A;  3DSC A;  1HP1 A;  3C5W C;  5DNY A;  4YKE A;  5IOH A;  1T70 A;  3IVE A;  2O8A A;  2QJC A;  3PSN A;  4F0Z A;  1OID A;  2NYL C;  4MOV A;  1Z2X A;  3IB7 A;  2BQ8 X;  4FBW A;  3FGA C;  4H2G A;  5HPE A;  3EGG A;  2KKN A;  5JPF A;  1IT6 A;  4DT2 A;  2HYO A;  1AUI A;  4TUI A;  3RL4 A;  2WDF A;  3H61 A;  2Z1A A;  2NPP C;  4O4K A;  3RL3 A;  3QFK A;  2WDC A;  3K7W C;  1W24 A;  1TCO A;  4LU9 A;  2NXF A;  1G5B A;  4UT2 A;  1HO5 A;  1MF8 A;  2IE3 C;  3QFN A;  1OIE A;  4H2I A;  4ORA A;  4KBP A;  3THN A;  3AUZ A;  3TGH A;  4IL1 A;  3QG5 C;  3T1I A;  1S3L A;  3DSD A;  1FJM A;  4HD0 A;  4UWQ A;  4TUG A;  3PSO A;  4H2F A;  3IVD A;  2NYM C;  4UT3 B;  2IAE C;  2BCD A;  5C1V A;  3ZU0 A;  3QFM A;  3H62 B;  4V0W A;  1U32 A;  4NZV A;  2Z06 A;  4FCX A;  2BDX A;  4UT3 A;  1UTE A;  2QFR A;  3C9F A;  4XPN A;  1Z2W A;  2XMO A;  4KKZ A;  4DHL A;  4DSY A;  2QFP A;  3H68 A;  2YVT A;  4IYP C;  4ZX2 A;  5J28 A;  3AV0 A;  4Q7F A;  2DFJ A;  4V0X A;  4H2B A;  1KBP A;  3ZTV A;  3CK2 A;  3QFO A;  4JA7 A;  5GTU A;  2R17 A;  4LAC C;  1WAR A;  3RL5 A;  4O43 A;  1II7 A;  3H66 A;  3LL8 A;  2JOG A;  2WDD A;  1M63 A;  4FBK A;  4FBQ A;  3H63 A;  3H60 A;  4MOY A;  3GVE A;  3N5U A;  3V4Y A;  1WAO 1;  1UF3 A;  3IB8 A;  1S3M A;  3KBP A;  4G9J A;  4JA9 A;  4M0V A;  2HY1 A;  3JYF A;  5JJT A;  1QFC A;  4ORC A;  2AHD A;  2ZBM A;  2P6B A;  1HPU A;  1S70 A;  1V73 A;  4WWL A;  2Z72 A;  1S3N A;  3HVQ A;  2GJU A;  4OR9 A; 
#chains in the Genus database with same CATH topology
 4MP0 A;  3K7V C;  3THO B;  1T71 A;  1S95 A;  3RQZ A;  4B2O A;  3D03 A;  4H1Y P;  4V0V A;  2CV9 A;  3E7B A;  5F3W A;  2Q8U A;  1XZW A;  1JK7 A;  1XM7 A;  3DW8 C;  3E0J A;  4ZVZ A;  4O24 A;  1OI8 A;  1SU1 A;  2HYP A;  3H67 A;  3P71 C;  4I5L C;  5INB A;  4ORB A;  5B8I A;  2DXN A;  2IE4 C;  3EGH A;  4LTY A;  3E7A A;  2USH A;  2O8G A;  4J6O A;  5EQV A;  3ICF A;  3H69 A;  4I5N C;  5JPE A;  1S8E A;  1NNW A;  3H64 A;  2A22 A;  1USH A;  2ZO9 B;  4O5G A;  1QHW A;  4H1S A;  2WDE A;  3DSC A;  1HP1 A;  3C5W C;  5DNY A;  4YKE A;  5IOH A;  1T70 A;  3IVE A;  2O8A A;  2QJC A;  3PSN A;  4F0Z A;  1OID A;  2NYL C;  4MOV A;  1Z2X A;  3IB7 A;  2BQ8 X;  4FBW A;  3FGA C;  4H2G A;  5HPE A;  3EGG A;  2KKN A;  5JPF A;  1IT6 A;  4DT2 A;  2HYO A;  1AUI A;  4TUI A;  3RL4 A;  2WDF A;  3H61 A;  2Z1A A;  2NPP C;  4O4K A;  3RL3 A;  3QFK A;  2WDC A;  3K7W C;  1W24 A;  1TCO A;  4LU9 A;  2NXF A;  1G5B A;  4UT2 A;  1HO5 A;  1MF8 A;  2IE3 C;  3QFN A;  1OIE A;  4H2I A;  4ORA A;  4KBP A;  3THN A;  3AUZ A;  3TGH A;  4IL1 A;  3QG5 C;  3T1I A;  1S3L A;  3DSD A;  1FJM A;  4HD0 A;  4UWQ A;  4TUG A;  3PSO A;  4H2F A;  2YEQ A;  3IVD A;  2NYM C;  4UT3 B;  2IAE C;  2BCD A;  5C1V A;  3ZU0 A;  3FLO A;  3QFM A;  3H62 B;  4V0W A;  1U32 A;  4NZV A;  2Z06 A;  4FCX A;  2BDX A;  4UT3 A;  1UTE A;  2QFR A;  3C9F A;  4XPN A;  1Z2W A;  2XMO A;  4KKZ A;  4DHL A;  4DSY A;  2QFP A;  3H68 A;  2YVT A;  4IYP C;  4ZX2 A;  5J28 A;  3AV0 A;  2DXL A;  4Q7F A;  2DFJ A;  2ZOA A;  4V0X A;  4H2B A;  1KBP A;  3ZTV A;  3CK2 A;  3QFO A;  4JA7 A;  5GTU A;  2R17 A;  4LAC C;  1WAR A;  3RL5 A;  4O43 A;  1II7 A;  3H66 A;  3LL8 A;  2JOG A;  2WDD A;  1M63 A;  4FBK A;  4FBQ A;  3H63 A;  3H60 A;  4MOY A;  3GVE A;  3N5U A;  3V4Y A;  1WAO 1;  1UF3 A;  3IB8 A;  1S3M A;  3KBP A;  4G9J A;  4JA9 A;  4M0V A;  2HY1 A;  3JYF A;  5JJT A;  1QFC A;  4ORC A;  2AHD A;  2ZBM A;  2P6B A;  1HPU A;  1S70 A;  1V73 A;  4WWL A;  2Z72 A;  1S3N A;  3HVQ A;  2GJU A;  4OR9 A; 
#chains in the Genus database with same CATH homology
 4MP0 A;  3K7V C;  3THO B;  1T71 A;  1S95 A;  3RQZ A;  4B2O A;  3D03 A;  4H1Y P;  4V0V A;  2CV9 A;  3E7B A;  5F3W A;  2Q8U A;  1XZW A;  1JK7 A;  1XM7 A;  3DW8 C;  3E0J A;  4ZVZ A;  4O24 A;  1OI8 A;  1SU1 A;  2HYP A;  3H67 A;  3P71 C;  4I5L C;  5INB A;  4ORB A;  5B8I A;  2DXN A;  2IE4 C;  3EGH A;  4LTY A;  3E7A A;  2USH A;  2O8G A;  4J6O A;  5EQV A;  3ICF A;  3H69 A;  4I5N C;  5JPE A;  1S8E A;  1NNW A;  3H64 A;  2A22 A;  1USH A;  2ZO9 B;  4O5G A;  1QHW A;  4H1S A;  2WDE A;  3DSC A;  1HP1 A;  3C5W C;  5DNY A;  4YKE A;  5IOH A;  1T70 A;  3IVE A;  2O8A A;  2QJC A;  3PSN A;  4F0Z A;  1OID A;  2NYL C;  4MOV A;  1Z2X A;  3IB7 A;  2BQ8 X;  4FBW A;  3FGA C;  4H2G A;  5HPE A;  3EGG A;  2KKN A;  5JPF A;  1IT6 A;  4DT2 A;  2HYO A;  1AUI A;  4TUI A;  3RL4 A;  2WDF A;  3H61 A;  2Z1A A;  2NPP C;  4O4K A;  3RL3 A;  3QFK A;  2WDC A;  3K7W C;  1W24 A;  1TCO A;  4LU9 A;  2NXF A;  1G5B A;  4UT2 A;  1HO5 A;  1MF8 A;  2IE3 C;  3QFN A;  1OIE A;  4H2I A;  4ORA A;  4KBP A;  3THN A;  3AUZ A;  3TGH A;  4IL1 A;  3QG5 C;  3T1I A;  1S3L A;  3DSD A;  1FJM A;  4HD0 A;  4UWQ A;  4TUG A;  3PSO A;  4H2F A;  2YEQ A;  3IVD A;  2NYM C;  4UT3 B;  2IAE C;  2BCD A;  5C1V A;  3ZU0 A;  3FLO A;  3QFM A;  3H62 B;  4V0W A;  1U32 A;  4NZV A;  2Z06 A;  4FCX A;  2BDX A;  4UT3 A;  1UTE A;  2QFR A;  3C9F A;  4XPN A;  1Z2W A;  2XMO A;  4KKZ A;  4DHL A;  4DSY A;  2QFP A;  3H68 A;  2YVT A;  4IYP C;  4ZX2 A;  5J28 A;  3AV0 A;  2DXL A;  4Q7F A;  2DFJ A;  2ZOA A;  4V0X A;  4H2B A;  1KBP A;  3ZTV A;  3CK2 A;  3QFO A;  4JA7 A;  5GTU A;  2R17 A;  4LAC C;  1WAR A;  3RL5 A;  4O43 A;  1II7 A;  3H66 A;  3LL8 A;  2JOG A;  2WDD A;  1M63 A;  4FBK A;  4FBQ A;  3H63 A;  3H60 A;  4MOY A;  3GVE A;  3N5U A;  3V4Y A;  1WAO 1;  1UF3 A;  3IB8 A;  1S3M A;  3KBP A;  4G9J A;  4JA9 A;  4M0V A;  2HY1 A;  3JYF A;  5JJT A;  1QFC A;  4ORC A;  2AHD A;  2ZBM A;  2P6B A;  1HPU A;  1S70 A;  1V73 A;  4WWL A;  2Z72 A;  1S3N A;  3HVQ A;  2GJU A;  4OR9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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