3IB8A

Crystal structure of full length rv0805 in complex with 5'-amp
Total Genus 90
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
90
sequence length
295
structure length
295
Chain Sequence
LRAAEHPRPDYVLLHISDTHLIGGDRRLYGAVDADDRLGELLEQLNQSGLRPDAIVFTGDLADKGEPAAYRKLRGLVEPFAAQLGAELVWVMGNHDDRAELRKFLLDEAPSMAPLDRVCMIDGLRIIVLDTSVPGHHHGEIRASQLGWLAEELATPAPDGTILALHHPPIPSVLDMAVTVELRDQAALGRVLRGTDVRAILAGHLHYSTNATFVGIPVSVASATCYTQDLTVAAGGTRGRDGAQGCNLVHVYPDTVVHSVIPLGGGETVGTFVSPGQARRKIAESGIFIEPSRRD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Mycobacterium tuberculosis
publication title A mycobacterial cyclic AMP phosphodiesterase that moonlights as a modifier of cell wall permeability
pubmed doi rcsb
molecule keywords Icc protein
total genus 90
structure length 295
sequence length 295
ec nomenclature ec 3.1.4.53: 3',5'-cyclic-AMP phosphodiesterase.
pdb deposition date 2009-07-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 3ib8A00
4WWLA 4O4KA 1QHWA 1Z2WA 3ICFA 3QFNA 4V0WA 2P6BA 1JK7A 3QFKA 2NYMC 1HP1A 2HYPA 1FJMA 3LL8A 4DT2A 5EQVA 3RQZA 5INBA 1T70A 3PSNA 1OI8A 1QFCA 3EGHA 4H1YP 4JA7A 4I5LC 3HVQA 1Z2XA 2HY1A 2WDFA 4ORBA 4DSYA 4LTYA 3THOB 4Q7FA 3AUZA 3JYFA 4UT3B 4MOYA 3GVEA 1S3MA 1U32A 1UF3A 1S3LA 3V4YA 2AHDA 2Z1AA 2R17A 4IYPC 3ZTVA 4ZX2A 4O43A 5JPEA 3FGAC 3IB8A 1WARA 3E7AA 2WDCA 3IB7A 2QFPA 4H2GA 4F0ZA 4V0XA 2GJUA 3H60A 4KKZA 5F3WA 4MOVA 2O8AA 2IE4C 3K7WC 1S8EA 3K7VC 2O8GA 1T71A 5DNYA 1SU1A 3H66A 4J6OA 4ZVZA 4JA9A 5JPFA 3RL4A 4ORAA 4YKEA 1HPUA 5J28A 4H2FA 4O5GA 4H1SA 3AV0A 4TUIA 3H61A 3QG5C 1TCOA 4MP0A 5C1VA 3H64A 2WDEA 1AUIA 1II7A 2USHA 4FBWA 2ZBMA 2DFJA 2Q8UA 1XM7A 3QFMA 4LACC 4KBPA 3C9FA 2A22A 1V73A 3DW8C 1USHA 3THNA 2IE3C 4O24A 1NNWA 1WAO1 3TGHA 4H2IA 2BDXA 1IT6A 5IOHA 4FBQA 3H69A 3PSOA 3H67A 4TUGA 3CK2A 4NZVA 4XPNA 4UT3A 4V0VA 2NXFA 3IVEA 4UT2A 2QJCA 4UWQA 4M0VA 2IAEC 3P71C 3RL5A 4HD0A 2NPPC 3H68A 1S95A 4FCXA 4DHLA 2Z72A 1OIDA 3T1IA 1S70A 2QFRA 5JJTA 5HPEA 2JOGA 2KKNA 2WDDA 1KBPA 2Z06A 5GTUA 3DSCA 3C5WC 4H2BA 3QFOA 3DSDA 3RL3A 1M63A 4IL1A 4I5NC 3N5UA 3E7BA 3H62B 1W24A 3IVDA 3KBPA 2BQ8X 2BCDA 1OIEA 2YVTA 4LU9A 1UTEA 3ZU0A 3EGGA 4OR9A 5B8IA 4G9JA 3H63A 4FBKA 2NYLC 1XZWA 2CV9A 1MF8A 2HYOA 2XMOA 4B2OA 4ORCA 1S3NA 1HO5A 1G5BA
chains in the Genus database with same CATH superfamily
4WWLA 4O4KA 1QHWA 1Z2WA 3ICFA 3QFNA 4V0WA 2P6BA 1JK7A 3QFKA 2NYMC 1HP1A 2HYPA 3E0JA 2DXNA 1FJMA 3LL8A 4DT2A 5EQVA 3RQZA 5INBA 1T70A 3PSNA 1OI8A 1QFCA 3EGHA 4H1YP 4JA7A 4I5LC 3HVQA 1Z2XA 2HY1A 2WDFA 4ORBA 4DSYA 4LTYA 3THOB 4Q7FA 3AUZA 3JYFA 4UT3B 4MOYA 3GVEA 1S3MA 1U32A 1UF3A 1S3LA 3V4YA 2AHDA 2Z1AA 2R17A 4IYPC 3ZTVA 4ZX2A 4O43A 2YEQA 5JPEA 3FGAC 3IB8A 1WARA 3E7AA 2WDCA 3IB7A 2QFPA 4H2GA 4F0ZA 4V0XA 2GJUA 3H60A 4KKZA 5F3WA 4MOVA 2O8AA 2IE4C 3K7WC 1S8EA 3K7VC 2O8GA 1T71A 5DNYA 1SU1A 3H66A 3FLOA 4J6OA 4ZVZA 4JA9A 5JPFA 3RL4A 4ORAA 4YKEA 1HPUA 5J28A 4H2FA 4O5GA 4H1SA 3AV0A 4TUIA 2DXLA 3H61A 3QG5C 1TCOA 4MP0A 5C1VA 3H64A 2WDEA 1AUIA 1II7A 2USHA 4FBWA 2ZBMA 2DFJA 2Q8UA 1XM7A 3QFMA 4LACC 4KBPA 3C9FA 2A22A 1V73A 3DW8C 1USHA 3THNA 2IE3C 4O24A 1NNWA 1WAO1 3TGHA 4H2IA 2BDXA 1IT6A 5IOHA 3D03A 4FBQA 3H69A 3PSOA 3H67A 4TUGA 3CK2A 2ZOAA 4NZVA 4XPNA 4UT3A 4V0VA 2NXFA 3IVEA 4UT2A 2QJCA 4UWQA 4M0VA 2IAEC 3P71C 3RL5A 4HD0A 2NPPC 3H68A 1S95A 4FCXA 4DHLA 2Z72A 1OIDA 3T1IA 1S70A 2QFRA 5JJTA 5HPEA 2JOGA 2KKNA 2WDDA 1KBPA 2Z06A 5GTUA 3DSCA 3C5WC 4H2BA 3QFOA 3DSDA 3RL3A 1M63A 4IL1A 4I5NC 3N5UA 2ZO9B 3E7BA 1W24A 3H62B 3IVDA 3KBPA 2BQ8X 2BCDA 1OIEA 2YVTA 4LU9A 1UTEA 3ZU0A 3EGGA 4OR9A 5B8IA 4G9JA 3H63A 4FBKA 2NYLC 1XZWA 2CV9A 1MF8A 2HYOA 2XMOA 4B2OA 4ORCA 1S3NA 1HO5A 1G5BA
chains in the Genus database with same CATH topology
4WWLA 4O4KA 1QHWA 1Z2WA 3ICFA 3QFNA 4V0WA 2P6BA 1JK7A 3QFKA 2NYMC 1HP1A 2HYPA 3E0JA 2DXNA 1FJMA 3LL8A 4DT2A 5EQVA 3RQZA 5INBA 1T70A 3PSNA 1OI8A 1QFCA 3EGHA 4H1YP 4JA7A 4I5LC 3HVQA 1Z2XA 2HY1A 2WDFA 4ORBA 4DSYA 4LTYA 3THOB 4Q7FA 3AUZA 3JYFA 4UT3B 4MOYA 3GVEA 1S3MA 1U32A 1UF3A 1S3LA 3V4YA 2AHDA 2Z1AA 2R17A 4IYPC 3ZTVA 4ZX2A 4O43A 2YEQA 5JPEA 3FGAC 3IB8A 1WARA 3E7AA 2WDCA 3IB7A 2QFPA 4H2GA 4F0ZA 4V0XA 2GJUA 3H60A 4KKZA 5F3WA 4MOVA 2O8AA 2IE4C 3K7WC 1S8EA 3K7VC 2O8GA 1T71A 5DNYA 1SU1A 3H66A 3FLOA 4J6OA 4ZVZA 4JA9A 5JPFA 3RL4A 4ORAA 4YKEA 1HPUA 5J28A 4H2FA 4O5GA 4H1SA 3AV0A 4TUIA 2DXLA 3H61A 3QG5C 1TCOA 4MP0A 5C1VA 3H64A 2WDEA 1AUIA 1II7A 2USHA 4FBWA 2ZBMA 2DFJA 2Q8UA 1XM7A 3QFMA 4LACC 4KBPA 3C9FA 2A22A 1V73A 3DW8C 1USHA 3THNA 2IE3C 4O24A 1NNWA 1WAO1 3TGHA 4H2IA 2BDXA 1IT6A 5IOHA 3D03A 4FBQA 3H69A 3PSOA 3H67A 4TUGA 3CK2A 2ZOAA 4NZVA 4XPNA 4UT3A 4V0VA 2NXFA 3IVEA 4UT2A 2QJCA 4UWQA 4M0VA 2IAEC 3P71C 3RL5A 4HD0A 2NPPC 3H68A 1S95A 4FCXA 4DHLA 2Z72A 1OIDA 3T1IA 1S70A 2QFRA 5JJTA 5HPEA 2JOGA 2KKNA 2WDDA 1KBPA 2Z06A 5GTUA 3DSCA 3C5WC 4H2BA 3QFOA 3DSDA 3RL3A 1M63A 4IL1A 4I5NC 3N5UA 2ZO9B 3E7BA 1W24A 3H62B 3IVDA 3KBPA 2BQ8X 2BCDA 1OIEA 2YVTA 4LU9A 1UTEA 3ZU0A 3EGGA 4OR9A 5B8IA 4G9JA 3H63A 4FBKA 2NYLC 1XZWA 2CV9A 1MF8A 2HYOA 2XMOA 4B2OA 4ORCA 1S3NA 1HO5A 1G5BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4WWL A;  4O4K A;  1QHW A;  1Z2W A;  3ICF A;  3QFN A;  4V0W A;  2P6B A;  1JK7 A;  3QFK A;  2NYM C;  1HP1 A;  2HYP A;  1FJM A;  3LL8 A;  4DT2 A;  5EQV A;  3RQZ A;  5INB A;  1T70 A;  3PSN A;  1OI8 A;  1QFC A;  3EGH A;  4H1Y P;  4JA7 A;  4I5L C;  3HVQ A;  1Z2X A;  2HY1 A;  2WDF A;  4ORB A;  4DSY A;  4LTY A;  3THO B;  4Q7F A;  3AUZ A;  3JYF A;  4UT3 B;  4MOY A;  3GVE A;  1S3M A;  1U32 A;  1UF3 A;  1S3L A;  3V4Y A;  2AHD A;  2Z1A A;  2R17 A;  4IYP C;  3ZTV A;  4ZX2 A;  4O43 A;  5JPE A;  3FGA C;  3IB8 A;  1WAR A;  3E7A A;  2WDC A;  3IB7 A;  2QFP A;  4H2G A;  4F0Z A;  4V0X A;  2GJU A;  3H60 A;  4KKZ A;  5F3W A;  4MOV A;  2O8A A;  2IE4 C;  3K7W C;  1S8E A;  3K7V C;  2O8G A;  1T71 A;  5DNY A;  1SU1 A;  3H66 A;  4J6O A;  4ZVZ A;  4JA9 A;  5JPF A;  3RL4 A;  4ORA A;  4YKE A;  1HPU A;  5J28 A;  4H2F A;  4O5G A;  4H1S A;  3AV0 A;  4TUI A;  3H61 A;  3QG5 C;  1TCO A;  4MP0 A;  5C1V A;  3H64 A;  2WDE A;  1AUI A;  1II7 A;  2USH A;  4FBW A;  2ZBM A;  2DFJ A;  2Q8U A;  1XM7 A;  3QFM A;  4LAC C;  4KBP A;  3C9F A;  2A22 A;  1V73 A;  3DW8 C;  1USH A;  3THN A;  2IE3 C;  4O24 A;  1NNW A;  1WAO 1;  3TGH A;  4H2I A;  2BDX A;  1IT6 A;  5IOH A;  4FBQ A;  3H69 A;  3PSO A;  3H67 A;  4TUG A;  3CK2 A;  4NZV A;  4XPN A;  4UT3 A;  4V0V A;  2NXF A;  3IVE A;  4UT2 A;  2QJC A;  4UWQ A;  4M0V A;  2IAE C;  3P71 C;  3RL5 A;  4HD0 A;  2NPP C;  3H68 A;  1S95 A;  4FCX A;  4DHL A;  2Z72 A;  1OID A;  3T1I A;  1S70 A;  2QFR A;  5JJT A;  5HPE A;  2JOG A;  2KKN A;  2WDD A;  1KBP A;  2Z06 A;  5GTU A;  3DSC A;  3C5W C;  4H2B A;  3QFO A;  3DSD A;  3RL3 A;  1M63 A;  4IL1 A;  4I5N C;  3N5U A;  3E7B A;  3H62 B;  1W24 A;  3IVD A;  3KBP A;  2BQ8 X;  2BCD A;  1OIE A;  2YVT A;  4LU9 A;  1UTE A;  3ZU0 A;  3EGG A;  4OR9 A;  5B8I A;  4G9J A;  3H63 A;  4FBK A;  2NYL C;  1XZW A;  2CV9 A;  1MF8 A;  2HYO A;  2XMO A;  4B2O A;  4ORC A;  1S3N A;  1HO5 A;  1G5B A; 
#chains in the Genus database with same CATH topology
 4WWL A;  4O4K A;  1QHW A;  1Z2W A;  3ICF A;  3QFN A;  4V0W A;  2P6B A;  1JK7 A;  3QFK A;  2NYM C;  1HP1 A;  2HYP A;  3E0J A;  2DXN A;  1FJM A;  3LL8 A;  4DT2 A;  5EQV A;  3RQZ A;  5INB A;  1T70 A;  3PSN A;  1OI8 A;  1QFC A;  3EGH A;  4H1Y P;  4JA7 A;  4I5L C;  3HVQ A;  1Z2X A;  2HY1 A;  2WDF A;  4ORB A;  4DSY A;  4LTY A;  3THO B;  4Q7F A;  3AUZ A;  3JYF A;  4UT3 B;  4MOY A;  3GVE A;  1S3M A;  1U32 A;  1UF3 A;  1S3L A;  3V4Y A;  2AHD A;  2Z1A A;  2R17 A;  4IYP C;  3ZTV A;  4ZX2 A;  4O43 A;  2YEQ A;  5JPE A;  3FGA C;  3IB8 A;  1WAR A;  3E7A A;  2WDC A;  3IB7 A;  2QFP A;  4H2G A;  4F0Z A;  4V0X A;  2GJU A;  3H60 A;  4KKZ A;  5F3W A;  4MOV A;  2O8A A;  2IE4 C;  3K7W C;  1S8E A;  3K7V C;  2O8G A;  1T71 A;  5DNY A;  1SU1 A;  3H66 A;  3FLO A;  4J6O A;  4ZVZ A;  4JA9 A;  5JPF A;  3RL4 A;  4ORA A;  4YKE A;  1HPU A;  5J28 A;  4H2F A;  4O5G A;  4H1S A;  3AV0 A;  4TUI A;  2DXL A;  3H61 A;  3QG5 C;  1TCO A;  4MP0 A;  5C1V A;  3H64 A;  2WDE A;  1AUI A;  1II7 A;  2USH A;  4FBW A;  2ZBM A;  2DFJ A;  2Q8U A;  1XM7 A;  3QFM A;  4LAC C;  4KBP A;  3C9F A;  2A22 A;  1V73 A;  3DW8 C;  1USH A;  3THN A;  2IE3 C;  4O24 A;  1NNW A;  1WAO 1;  3TGH A;  4H2I A;  2BDX A;  1IT6 A;  5IOH A;  3D03 A;  4FBQ A;  3H69 A;  3PSO A;  3H67 A;  4TUG A;  3CK2 A;  2ZOA A;  4NZV A;  4XPN A;  4UT3 A;  4V0V A;  2NXF A;  3IVE A;  4UT2 A;  2QJC A;  4UWQ A;  4M0V A;  2IAE C;  3P71 C;  3RL5 A;  4HD0 A;  2NPP C;  3H68 A;  1S95 A;  4FCX A;  4DHL A;  2Z72 A;  1OID A;  3T1I A;  1S70 A;  2QFR A;  5JJT A;  5HPE A;  2JOG A;  2KKN A;  2WDD A;  1KBP A;  2Z06 A;  5GTU A;  3DSC A;  3C5W C;  4H2B A;  3QFO A;  3DSD A;  3RL3 A;  1M63 A;  4IL1 A;  4I5N C;  3N5U A;  2ZO9 B;  3E7B A;  1W24 A;  3H62 B;  3IVD A;  3KBP A;  2BQ8 X;  2BCD A;  1OIE A;  2YVT A;  4LU9 A;  1UTE A;  3ZU0 A;  3EGG A;  4OR9 A;  5B8I A;  4G9J A;  3H63 A;  4FBK A;  2NYL C;  1XZW A;  2CV9 A;  1MF8 A;  2HYO A;  2XMO A;  4B2O A;  4ORC A;  1S3N A;  1HO5 A;  1G5B A; 
#chains in the Genus database with same CATH homology
 4WWL A;  4O4K A;  1QHW A;  1Z2W A;  3ICF A;  3QFN A;  4V0W A;  2P6B A;  1JK7 A;  3QFK A;  2NYM C;  1HP1 A;  2HYP A;  3E0J A;  2DXN A;  1FJM A;  3LL8 A;  4DT2 A;  5EQV A;  3RQZ A;  5INB A;  1T70 A;  3PSN A;  1OI8 A;  1QFC A;  3EGH A;  4H1Y P;  4JA7 A;  4I5L C;  3HVQ A;  1Z2X A;  2HY1 A;  2WDF A;  4ORB A;  4DSY A;  4LTY A;  3THO B;  4Q7F A;  3AUZ A;  3JYF A;  4UT3 B;  4MOY A;  3GVE A;  1S3M A;  1U32 A;  1UF3 A;  1S3L A;  3V4Y A;  2AHD A;  2Z1A A;  2R17 A;  4IYP C;  3ZTV A;  4ZX2 A;  4O43 A;  2YEQ A;  5JPE A;  3FGA C;  3IB8 A;  1WAR A;  3E7A A;  2WDC A;  3IB7 A;  2QFP A;  4H2G A;  4F0Z A;  4V0X A;  2GJU A;  3H60 A;  4KKZ A;  5F3W A;  4MOV A;  2O8A A;  2IE4 C;  3K7W C;  1S8E A;  3K7V C;  2O8G A;  1T71 A;  5DNY A;  1SU1 A;  3H66 A;  3FLO A;  4J6O A;  4ZVZ A;  4JA9 A;  5JPF A;  3RL4 A;  4ORA A;  4YKE A;  1HPU A;  5J28 A;  4H2F A;  4O5G A;  4H1S A;  3AV0 A;  4TUI A;  2DXL A;  3H61 A;  3QG5 C;  1TCO A;  4MP0 A;  5C1V A;  3H64 A;  2WDE A;  1AUI A;  1II7 A;  2USH A;  4FBW A;  2ZBM A;  2DFJ A;  2Q8U A;  1XM7 A;  3QFM A;  4LAC C;  4KBP A;  3C9F A;  2A22 A;  1V73 A;  3DW8 C;  1USH A;  3THN A;  2IE3 C;  4O24 A;  1NNW A;  1WAO 1;  3TGH A;  4H2I A;  2BDX A;  1IT6 A;  5IOH A;  3D03 A;  4FBQ A;  3H69 A;  3PSO A;  3H67 A;  4TUG A;  3CK2 A;  2ZOA A;  4NZV A;  4XPN A;  4UT3 A;  4V0V A;  2NXF A;  3IVE A;  4UT2 A;  2QJC A;  4UWQ A;  4M0V A;  2IAE C;  3P71 C;  3RL5 A;  4HD0 A;  2NPP C;  3H68 A;  1S95 A;  4FCX A;  4DHL A;  2Z72 A;  1OID A;  3T1I A;  1S70 A;  2QFR A;  5JJT A;  5HPE A;  2JOG A;  2KKN A;  2WDD A;  1KBP A;  2Z06 A;  5GTU A;  3DSC A;  3C5W C;  4H2B A;  3QFO A;  3DSD A;  3RL3 A;  1M63 A;  4IL1 A;  4I5N C;  3N5U A;  2ZO9 B;  3E7B A;  1W24 A;  3H62 B;  3IVD A;  3KBP A;  2BQ8 X;  2BCD A;  1OIE A;  2YVT A;  4LU9 A;  1UTE A;  3ZU0 A;  3EGG A;  4OR9 A;  5B8I A;  4G9J A;  3H63 A;  4FBK A;  2NYL C;  1XZW A;  2CV9 A;  1MF8 A;  2HYO A;  2XMO A;  4B2O A;  4ORC A;  1S3N A;  1HO5 A;  1G5B A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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