3IBXA

Crystal structure of f47y variant of tena (hp1287) from helicobacter pylori
Total Genus 91
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
91
sequence length
221
structure length
221
Chain Sequence
DPFTMQVSQYLYQNAQSIWGDCISHPFVQGIGRGTLERDKFRFYIIQDYLYLLEYAKVFALGVVKACDEAVMREFSNAIQDILNNEMSIHNHYIRELQITQKELQNACPTLANKSYTSYMLAEGFKGSIKEVAAAVLSCGWSYLVIAQNLSQIPNALEHAFYGHWIKGYSSKEFQACVNWNINLLDSLTLASSKQEIEKLKEIFITTSEYEYLFWDMAYQS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Putative thiaminase II
publication title Structural and mutational analysis of TenA protein (HP1287) from the Helicobacter pylori thiamin salvage pathway - evidence of a different substrate specificity.
pubmed doi rcsb
source organism Helicobacter pylori
total genus 91
structure length 221
sequence length 221
chains with identical sequence D
ec nomenclature ec 3.5.99.2: Aminopyrimidine aminohydrolase.
pdb deposition date 2009-07-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03070 TENA_THI-4 TENA/THI-4/PQQC family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.910.10 Mainly Alpha Up-down Bundle Heme Oxygenase; Chain A Heme oxygenase-like 3ibxA00
4GOHA 4FN6A 3MOOA 3OQLA 1WZGA 2A2MA 1IW0A 2RD3A 2Q32A 1WOWA 3BJDA 4GPHA 1XK2A 1OZLA 1J77A 1TWNA 3K4FA 1RCWA 1WNWA 1OZWA 1OTVA 4GPCA 1XK1A 4G8WA 1DVEA 1YAFA 1TWRA 3HMLA 3MVUA 1TYHA 1UBBA 4G8PA 1TO9A 1WZDA 2DY5A 4WD4A 1T5PA 2A6BA 1IX4A 4WWZA 4G7LA 1XK3A 3IBXA 3CZYA 1IX3A 1XJZA 3HLXA 4G7PA 1V8XA 4G7UA 2F2GA 2QZCA 4WMHA 1N45A 1SK7A 1OYLA 1OZRA 2QPPA 1WWMA 4RAJA 1YAKA 3DDEA 4GPFA 1WZFA 3B5OA 4LQXA 1OYKA 4G98A 4WX0A 3HOKA 1S8CA 3HNHA 3TGMA 1WNVA 1WE1A 4G7TA 2RGZA 3I9UA 1XK0A 3RM5A 1N3UA 1NI6A 2Q4XA 2ZVUA 4G99A 2Z68A 1J2CA 5BTQA 1S13A 1Z72A 2GM7A 2A2OA 2E7EA 1P3TA 4WWJA 1DVGA 3NO6A 4G8UA 1WNXA 1P3VA 1UDDA 4MECA 1TO9B 3B5PA 2GM8A 1RTWA 1ULXA 1WOVA 1J02A 4NY7A 1P3UA 1VGIA 1IW1A 3I8RA 1IVJA 1OTWA 1WOXA 3I9TA 2QCXA 1IRMA 1OZEA
chains in the Genus database with same CATH superfamily
4GOHA 4FN6A 3MOOA 3OQLA 1WZGA 2A2MA 1IW0A 2RD3A 2Q32A 1WOWA 3BJDA 4GPHA 1XK2A 1OZLA 1J77A 1TWNA 3K4FA 1RCWA 1WNWA 1OZWA 1OTVA 4GPCA 1XK1A 4G8WA 1DVEA 1YAFA 1TWRA 3HMLA 3MVUA 1TYHA 1UBBA 4G8PA 1TO9A 1WZDA 2DY5A 4WD4A 1T5PA 2A6BA 1IX4A 4WWZA 4G7LA 1XK3A 3IBXA 3CZYA 1IX3A 1XJZA 3HLXA 4G7PA 1V8XA 4G7UA 2F2GA 2QZCA 4WMHA 1N45A 1SK7A 1OYLA 1OZRA 2QPPA 1WWMA 4RAJA 1YAKA 3DDEA 4GPFA 1WZFA 3B5OA 4LQXA 1OYKA 4G98A 4WX0A 3HOKA 1S8CA 3HNHA 3TGMA 1WNVA 1WE1A 4G7TA 2RGZA 3I9UA 1XK0A 3RM5A 1N3UA 1NI6A 2Q4XA 2ZVUA 4G99A 2Z68A 1J2CA 5BTQA 1S13A 1Z72A 2GM7A 2A2OA 2E7EA 1P3TA 4WWJA 1DVGA 3NO6A 2LCUA 4G8UA 1WNXA 1P3VA 1UDDA 4MECA 1TO9B 3B5PA 2GM8A 1RTWA 1ULXA 1WOVA 1J02A 4NY7A 1P3UA 1VGIA 1IW1A 3I8RA 1IVJA 1OTWA 1WOXA 3I9TA 2QCXA 1IRMA 1OZEA
chains in the Genus database with same CATH topology
4GOHA 4FN6A 3MOOA 3OQLA 1WZGA 2A2MA 1IW0A 2RD3A 2Q32A 1WOWA 3BJDA 4GPHA 1XK2A 1OZLA 1J77A 1TWNA 3K4FA 1RCWA 1WNWA 1OZWA 1OTVA 4GPCA 1XK1A 4G8WA 1DVEA 1YAFA 1TWRA 3HMLA 3MVUA 1TYHA 1UBBA 4G8PA 1TO9A 1WZDA 2DY5A 4WD4A 1T5PA 2A6BA 1IX4A 4WWZA 4G7LA 1XK3A 3IBXA 3CZYA 1IX3A 1XJZA 3HLXA 4G7PA 1V8XA 4G7UA 2F2GA 2QZCA 4WMHA 1N45A 1SK7A 1OYLA 1OZRA 2QPPA 1WWMA 4RAJA 1YAKA 3DDEA 4GPFA 1WZFA 3B5OA 4LQXA 1OYKA 4G98A 4WX0A 3HOKA 1S8CA 3HNHA 3TGMA 1WNVA 1WE1A 4G7TA 2RGZA 3I9UA 1XK0A 3RM5A 1N3UA 1NI6A 2Q4XA 2ZVUA 4G99A 2Z68A 1J2CA 5BTQA 1S13A 1Z72A 2GM7A 2A2OA 2E7EA 1P3TA 4WWJA 1DVGA 3NO6A 4G8UA 1WNXA 1P3VA 1UDDA 4MECA 1TO9B 3B5PA 2GM8A 1RTWA 1ULXA 1WOVA 1J02A 4NY7A 1P3UA 1VGIA 1IW1A 3I8RA 1IVJA 1OTWA 1WOXA 3I9TA 2QCXA 1IRMA 1OZEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GOH A;  4FN6 A;  3MOO A;  3OQL A;  1WZG A;  2A2M A;  1IW0 A;  2RD3 A;  2Q32 A;  1WOW A;  3BJD A;  4GPH A;  1XK2 A;  1OZL A;  1J77 A;  1TWN A;  3K4F A;  1RCW A;  1WNW A;  1OZW A;  1OTV A;  4GPC A;  1XK1 A;  4G8W A;  1DVE A;  1YAF A;  1TWR A;  3HML A;  3MVU A;  1TYH A;  1UBB A;  4G8P A;  1TO9 A;  1WZD A;  2DY5 A;  4WD4 A;  1T5P A;  2A6B A;  1IX4 A;  4WWZ A;  4G7L A;  1XK3 A;  3IBX A;  3CZY A;  1IX3 A;  1XJZ A;  3HLX A;  4G7P A;  1V8X A;  4G7U A;  2F2G A;  2QZC A;  4WMH A;  1N45 A;  1SK7 A;  1OYL A;  1OZR A;  2QPP A;  1WWM A;  4RAJ A;  1YAK A;  3DDE A;  4GPF A;  1WZF A;  3B5O A;  4LQX A;  1OYK A;  4G98 A;  4WX0 A;  3HOK A;  1S8C A;  3HNH A;  3TGM A;  1WNV A;  1WE1 A;  4G7T A;  2RGZ A;  3I9U A;  1XK0 A;  3RM5 A;  1N3U A;  1NI6 A;  2Q4X A;  2ZVU A;  4G99 A;  2Z68 A;  1J2C A;  5BTQ A;  1S13 A;  1Z72 A;  2GM7 A;  2A2O A;  2E7E A;  1P3T A;  4WWJ A;  1DVG A;  3NO6 A;  4G8U A;  1WNX A;  1P3V A;  1UDD A;  4MEC A;  1TO9 B;  3B5P A;  2GM8 A;  1RTW A;  1ULX A;  1WOV A;  1J02 A;  4NY7 A;  1P3U A;  1VGI A;  1IW1 A;  3I8R A;  1IVJ A;  1OTW A;  1WOX A;  3I9T A;  2QCX A;  1IRM A;  1OZE A; 
#chains in the Genus database with same CATH topology
 4GOH A;  4FN6 A;  3MOO A;  3OQL A;  1WZG A;  2A2M A;  1IW0 A;  2RD3 A;  2Q32 A;  1WOW A;  3BJD A;  4GPH A;  1XK2 A;  1OZL A;  1J77 A;  1TWN A;  3K4F A;  1RCW A;  1WNW A;  1OZW A;  1OTV A;  4GPC A;  1XK1 A;  4G8W A;  1DVE A;  1YAF A;  1TWR A;  3HML A;  3MVU A;  1TYH A;  1UBB A;  4G8P A;  1TO9 A;  1WZD A;  2DY5 A;  4WD4 A;  1T5P A;  2A6B A;  1IX4 A;  4WWZ A;  4G7L A;  1XK3 A;  3IBX A;  3CZY A;  1IX3 A;  1XJZ A;  3HLX A;  4G7P A;  1V8X A;  4G7U A;  2F2G A;  2QZC A;  4WMH A;  1N45 A;  1SK7 A;  1OYL A;  1OZR A;  2QPP A;  1WWM A;  4RAJ A;  1YAK A;  3DDE A;  4GPF A;  1WZF A;  3B5O A;  4LQX A;  1OYK A;  4G98 A;  4WX0 A;  3HOK A;  1S8C A;  3HNH A;  3TGM A;  1WNV A;  1WE1 A;  4G7T A;  2RGZ A;  3I9U A;  1XK0 A;  3RM5 A;  1N3U A;  1NI6 A;  2Q4X A;  2ZVU A;  4G99 A;  2Z68 A;  1J2C A;  5BTQ A;  1S13 A;  1Z72 A;  2GM7 A;  2A2O A;  2E7E A;  1P3T A;  4WWJ A;  1DVG A;  3NO6 A;  2LCU A;  4G8U A;  1WNX A;  1P3V A;  1UDD A;  4MEC A;  1TO9 B;  3B5P A;  2GM8 A;  1RTW A;  1ULX A;  1WOV A;  1J02 A;  4NY7 A;  1P3U A;  1VGI A;  1IW1 A;  3I8R A;  1IVJ A;  1OTW A;  1WOX A;  3I9T A;  2QCX A;  1IRM A;  1OZE A; 
#chains in the Genus database with same CATH homology
 4GOH A;  4FN6 A;  3MOO A;  3OQL A;  1WZG A;  2A2M A;  1IW0 A;  2RD3 A;  2Q32 A;  1WOW A;  3BJD A;  4GPH A;  1XK2 A;  1OZL A;  1J77 A;  1TWN A;  3K4F A;  1RCW A;  1WNW A;  1OZW A;  1OTV A;  4GPC A;  1XK1 A;  4G8W A;  1DVE A;  1YAF A;  1TWR A;  3HML A;  3MVU A;  1TYH A;  1UBB A;  4G8P A;  1TO9 A;  1WZD A;  2DY5 A;  4WD4 A;  1T5P A;  2A6B A;  1IX4 A;  4WWZ A;  4G7L A;  1XK3 A;  3IBX A;  3CZY A;  1IX3 A;  1XJZ A;  3HLX A;  4G7P A;  1V8X A;  4G7U A;  2F2G A;  2QZC A;  4WMH A;  1N45 A;  1SK7 A;  1OYL A;  1OZR A;  2QPP A;  1WWM A;  4RAJ A;  1YAK A;  3DDE A;  4GPF A;  1WZF A;  3B5O A;  4LQX A;  1OYK A;  4G98 A;  4WX0 A;  3HOK A;  1S8C A;  3HNH A;  3TGM A;  1WNV A;  1WE1 A;  4G7T A;  2RGZ A;  3I9U A;  1XK0 A;  3RM5 A;  1N3U A;  1NI6 A;  2Q4X A;  2ZVU A;  4G99 A;  2Z68 A;  1J2C A;  5BTQ A;  1S13 A;  1Z72 A;  2GM7 A;  2A2O A;  2E7E A;  1P3T A;  4WWJ A;  1DVG A;  3NO6 A;  4G8U A;  1WNX A;  1P3V A;  1UDD A;  4MEC A;  1TO9 B;  3B5P A;  2GM8 A;  1RTW A;  1ULX A;  1WOV A;  1J02 A;  4NY7 A;  1P3U A;  1VGI A;  1IW1 A;  3I8R A;  1IVJ A;  1OTW A;  1WOX A;  3I9T A;  2QCX A;  1IRM A;  1OZE A; 
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similar chains in the pdb database (?% sequence similarity)

 
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