3IBZA

Crystal structure of putative tellurium resistant like protein (terd) from streptomyces coelicolor a3(2)
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
179
structure length
177
Chain Sequence
LTKEGLTAVIVGLGWDIRTTTGTDFDLDASALLLNSGGKVASDAHFIFFNNLKSPDGSVEHTGDNITGEGEGDDEQIKINLATVPADIEKIVFPVSIYDAENRQQSFGQVRNAFIRVVNQAGEAEIARYDLSEDASTETAMVFGELYRHGAEWKFRAIGQGYASGLRGIAQDFGVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords Putative tellurium resistant like protein TerD
publication title Crystal structure of putative tellurium resistant like protein (TerD) from Streptomyces coelicolor A3(2)
rcsb
source organism Streptomyces coelicolor a3(2)
total genus 42
structure length 177
sequence length 179
ec nomenclature
pdb deposition date 2009-07-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02342 TerD TerD domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.60.30 Mainly Beta Sandwich Lipoxygenase-1 sav2460 like domains 3ibzA01
2QNGA 2KXTA 2KXVA 3IBZA 2QZ7A
chains in the Genus database with same CATH superfamily
1FGOA 5EEOA 2KXVA 1OLPA 2XHHA 3U6GA 4WHAA 1LPBB 2QNGA 2XFDA 4QWTA 2QZ7A 1ROVA 4WFOA 2LG7A 3BNEA 1KHOA 2XHJA 2PVSA 3IBZA 1RRLA 1GYGA 3FG1A 3VF1A 2WY6A 4QEYA 3PZWA 2KXTA 2IUJA 1IK3A 1GPLA 1LOXA 3O8YA 3BNCA 1FGQA 1HU9A 2IUKA 2WXTA 2FNQA 1N8SA 1FGRA 1RP1A 1QMDA 3V92A 2LGEA 2SBLA 1FGTA 1BU8A 3FG3A 1FGMA 3BNDA 3FG4A 2WXUA 3V99A 1W52X 1ETHA 1F8NA 1RRHA 1NO3A 1LNHA 2PPLA 1Y4KA 3V98A 1N8QA 1HPLA 3BNBA 1JNQA 1YGEA 2OXEA 3CWZB 2P0MA 2XFEA 2LRGA 1QM6A 1LPAB 4NREA 1CA1A
chains in the Genus database with same CATH topology
2QNGA 2KXTA 2KXVA 3IBZA 2QZ7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QNG A;  2KXT A;  2KXV A;  3IBZ A;  2QZ7 A; 
#chains in the Genus database with same CATH topology
 1FGO A;  5EEO A;  2KXV A;  1OLP A;  2XHH A;  3U6G A;  4WHA A;  1LPB B;  2QNG A;  2XFD A;  4QWT A;  2QZ7 A;  1ROV A;  4WFO A;  2LG7 A;  3BNE A;  1KHO A;  2XHJ A;  2PVS A;  3IBZ A;  1RRL A;  1GYG A;  3FG1 A;  3VF1 A;  2WY6 A;  4QEY A;  3PZW A;  2KXT A;  2IUJ A;  1IK3 A;  1GPL A;  1LOX A;  3O8Y A;  3BNC A;  1FGQ A;  1HU9 A;  2IUK A;  2WXT A;  2FNQ A;  1N8S A;  1FGR A;  1RP1 A;  1QMD A;  3V92 A;  2LGE A;  2SBL A;  1FGT A;  1BU8 A;  3FG3 A;  1FGM A;  3BND A;  3FG4 A;  2WXU A;  3V99 A;  1W52 X;  1ETH A;  1F8N A;  1RRH A;  1NO3 A;  1LNH A;  2PPL A;  1Y4K A;  3V98 A;  1N8Q A;  1HPL A;  3BNB A;  1JNQ A;  1YGE A;  2OXE A;  3CWZ B;  2P0M A;  2XFE A;  2LRG A;  1QM6 A;  1LPA B;  4NRE A;  1CA1 A; 
#chains in the Genus database with same CATH homology
 2QNG A;  2KXT A;  2KXV A;  3IBZ A;  2QZ7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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