3IDDA

Cofactor-independent phosphoglycerate mutase from thermoplasma acidophilum dsm 1728
Total Genus 112
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
112
Knots found
sequence length
395
structure length
364
Chain Sequence
KSIILIVLDGLGDRPGSDLQNRTPLQAAFRPNLNWLASHGINGIMHPISPSDTSHMSLLGYDPKVYYPGRGPFEALGLGMDIRPGDLAFRANFATNRDGVIVDRRAGRENKGNEELADAISLDMGEYSFRVKSGVEHRAALVVSGPDLSDMIGDSDPHREGLPPEKIRPTDPSGDRTAEVMNAYLEEARRILSDHRVNKERVKNGRLPGNELLVRSAGKVPAIPSFTEKNRMKGACVVGSPWLKGLCRLLRMDVFDVPSNYRGKIEKAVDLTSSHDFVLVNIKNYPLKRDVIEDIDRAMEPLKSIGDHAVICVTGDHSDPVPIVFYTDGVMNDGVHLFDELSSASGSLRITSYNVMDILMQLAG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Cofactor-Independent Phosphoglycerate Mutase from Thermoplasma acidophilum DSM 1728
rcsb
source organism Thermoplasma acidophilum
molecule tags Isomerase
molecule keywords 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
total genus 112
structure length 364
sequence length 395
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 5.4.2.12: Phosphoglycerate mutase (2,3-diphosphoglycerate-independent).
pdb deposition date 2009-07-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01676 Metalloenzyme Metalloenzyme superfamily
A PF10143 PhosphMutase 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3iddA01
2W5SA 5IJQA 2W5XA 2IUCA 4ZG9A 3IGZB 4UPHA 5TJ3A 2IFYA 1URBA 2ANHA 5DLWA 4CYSA 3E2DA 2W8SA 1AJDA 2VQRA 2W5QA 4GTXA 3TWZA 5LQQA 4MY4A 2RH6A 1ALKA 3CMRA 3UN2A 1ZEFA 3UNYA 1AJCA 3NKRA 4GTYA 4MHXA 3UO0A 4CXKA 3NVLA 1ED9A 2X98A 3NKNA 3SZYA 4ZG6A 3DPCA 1Y6VA 1ZEBA 4UORA 2IUCB 4LRCA 2W5TA 3T01A 3BDGB 1E2SP 4LREA 4UOPA 5INHA 1ELYA 2GSUA 1KHKA 4UPIA 3IGYB 2W5WA 3TG0A 4LRBA 1ALIA 1KHNA 1AJBA 4GTZA 4CXUA 2W5VA 4UPKA 4ZG7A 1ELZA 4LR9A 4LR8A 5KXAA 3ED4A 2GA3A 3B5QA 2QZUA 1O99A 1N2KA 1O98A 3Q3QA 2XRGA 4GTWA 1HDHA 4KAVA 5L0BA 1E33P 4NWJA 3WAYA 3T00A 1KH5A 4KJGA 5LRMA 1EJJA 1ELXA 3DYCA 1KHLA 3SZZA 4FDIA 1P49A 3UN5A 4FDJA 3A52A 1ZEDA 4CXSA 2W5RA 4LR7A 3MK1A 2XR9A 3WAVA 4LQYA 1ANIA 5K4PA 3WAXA 1ALHA 3M8YA 5EGEA 1EW8A 3MK0A 3OT9A 5C66A 1KH9A 1B8JA 2GSOA 3T02A 1ALJA 3BDHA 5EGHA 5LRNA 1KHJA 4NWXA 5GOVA 2W8DA 1SHNA 4QAXA 3NKQA 2GLQA 3NKPA 3NKOA 1Y7AA 1EI6A 1ANJA 1AUKA 1EW2A 1HQAA 2ZKTA 3TX0A 3UN3A 5L0EA 3BDGA 2D1GA 4N7TA 4LRAA 1FSUA 4LR2A 1E3CP 3BDFA 1SHQA 4MIVA 3LXQA 4KM4A 3M8ZA 5HRTA 5DLTA 3WAWA 3M7VA 1AJAA 1EQJA 1K7HA 1KH4A 4CYRA 1HJKA 4UPLA 5DLVA 1URAA 1ED8A 4TN0A 4B56A 4YR1A 5AJ9A 5LIAA 5GRRA 1KH7A 4LRDA 3MK2A 4LRFA 5L0KA 3NKMA 3WBHA 3KD8A 4KAYA 3IDDA 2G9YA 3M8WA 4ZGAA 5IJSA 4UOOA 1EW9A 4KJDA 2GSNA 1E1ZP 1N2LA
chains in the Genus database with same CATH superfamily
2W5SA 5IJQA 2W5XA 2IUCA 4ZG9A 3IGZB 4UPHA 5TJ3A 2IFYA 1URBA 2ANHA 5DLWA 4CYSA 3E2DA 2W8SA 1AJDA 2VQRA 2W5QA 4GTXA 3TWZA 5LQQA 4MY4A 2RH6A 1ALKA 3CMRA 3UN2A 1ZEFA 3UNYA 1AJCA 3NKRA 4GTYA 4MHXA 3UO0A 4CXKA 3NVLA 1ED9A 2X98A 3NKNA 3SZYA 4ZG6A 3DPCA 1Y6VA 1ZEBA 4UORA 2IUCB 4LRCA 2W5TA 3T01A 3BDGB 1E2SP 4LREA 4UOPA 5INHA 1ELYA 2GSUA 1KHKA 4UPIA 3IGYB 2W5WA 3TG0A 4LRBA 1ALIA 1KHNA 1AJBA 4GTZA 4CXUA 2W5VA 4UPKA 4ZG7A 1ELZA 4LR9A 4LR8A 5KXAA 3ED4A 2GA3A 3B5QA 2QZUA 1O99A 1N2KA 1O98A 3Q3QA 2XRGA 4GTWA 1HDHA 4KAVA 5L0BA 1E33P 4NWJA 3WAYA 3T00A 1KH5A 4KJGA 5LRMA 1EJJA 1ELXA 3DYCA 1KHLA 3SZZA 4FDIA 1P49A 3UN5A 4FDJA 3A52A 1ZEDA 4CXSA 2W5RA 4LR7A 3MK1A 2XR9A 3WAVA 4LQYA 1ANIA 5K4PA 3WAXA 1ALHA 3M8YA 5EGEA 1EW8A 3MK0A 3OT9A 5C66A 1KH9A 1B8JA 2GSOA 3T02A 1ALJA 3BDHA 5EGHA 5LRNA 1KHJA 4NWXA 5GOVA 2W8DA 1SHNA 4QAXA 3NKQA 2GLQA 3NKPA 3NKOA 1Y7AA 1EI6A 1ANJA 1AUKA 1EW2A 1HQAA 2ZKTA 3TX0A 3UN3A 5L0EA 3BDGA 2D1GA 4N7TA 4LRAA 1FSUA 4LR2A 1E3CP 3BDFA 1SHQA 4MIVA 3LXQA 4KM4A 3M8ZA 5HRTA 5DLTA 3WAWA 3M7VA 1AJAA 1EQJA 1K7HA 1KH4A 4CYRA 1HJKA 4UPLA 5DLVA 1URAA 1ED8A 4TN0A 4B56A 4YR1A 5AJ9A 5LIAA 5GRRA 1KH7A 4LRDA 3MK2A 4LRFA 5L0KA 3NKMA 3WBHA 3KD8A 4KAYA 3IDDA 2G9YA 3M8WA 4ZGAA 5IJSA 4UOOA 1EW9A 4KJDA 2GSNA 1E1ZP 1N2LA
chains in the Genus database with same CATH topology
2W5SA 5IJQA 2W5XA 2IUCA 4ZG9A 3IGZB 4UPHA 5TJ3A 2IFYA 1URBA 2ANHA 5DLWA 4CYSA 3E2DA 2W8SA 1AJDA 2VQRA 2W5QA 4GTXA 3TWZA 5LQQA 4MY4A 2RH6A 1ALKA 3CMRA 3UN2A 1ZEFA 3UNYA 1AJCA 3NKRA 4GTYA 4MHXA 3UO0A 4CXKA 3NVLA 1ED9A 2X98A 3NKNA 3SZYA 4ZG6A 3DPCA 1Y6VA 1ZEBA 4UORA 2IUCB 4LRCA 2W5TA 3T01A 3BDGB 1E2SP 4LREA 4UOPA 5INHA 1ELYA 2GSUA 1KHKA 4UPIA 3IGYB 2W5WA 3TG0A 4LRBA 1ALIA 1KHNA 1AJBA 4GTZA 4CXUA 2W5VA 4UPKA 4ZG7A 1ELZA 4LR9A 4LR8A 5KXAA 3ED4A 2GA3A 3B5QA 2QZUA 1O99A 1N2KA 1O98A 3Q3QA 2XRGA 4GTWA 1HDHA 4KAVA 5L0BA 1E33P 4NWJA 3WAYA 3T00A 1KH5A 4KJGA 5LRMA 1EJJA 1ELXA 3DYCA 1KHLA 3SZZA 4FDIA 1P49A 3UN5A 4FDJA 3A52A 1ZEDA 4CXSA 2W5RA 4LR7A 3MK1A 2XR9A 3WAVA 4LQYA 1ANIA 5K4PA 3WAXA 1ALHA 3M8YA 5EGEA 1EW8A 3MK0A 3OT9A 5C66A 1KH9A 1B8JA 2GSOA 3T02A 1ALJA 3BDHA 5EGHA 5LRNA 1KHJA 4NWXA 5GOVA 2W8DA 1SHNA 4QAXA 3NKQA 2GLQA 3NKPA 3NKOA 1Y7AA 1EI6A 1ANJA 1AUKA 1EW2A 1HQAA 2ZKTA 3TX0A 3UN3A 5L0EA 3BDGA 2D1GA 4N7TA 4LRAA 1FSUA 4LR2A 1E3CP 3BDFA 1SHQA 4MIVA 3LXQA 4KM4A 3M8ZA 5HRTA 5DLTA 3WAWA 3M7VA 1AJAA 1EQJA 1K7HA 1KH4A 4CYRA 1HJKA 4UPLA 5DLVA 1URAA 1ED8A 4TN0A 4B56A 4YR1A 5AJ9A 5LIAA 5GRRA 1KH7A 4LRDA 3MK2A 4LRFA 5L0KA 3NKMA 3WBHA 3KD8A 4KAYA 3IDDA 2G9YA 3M8WA 4ZGAA 5IJSA 4UOOA 1EW9A 4KJDA 2GSNA 1E1ZP 1N2LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2W5S A;  5IJQ A;  2W5X A;  2IUC A;  4ZG9 A;  3IGZ B;  4UPH A;  5TJ3 A;  2IFY A;  1URB A;  2ANH A;  5DLW A;  4CYS A;  3E2D A;  2W8S A;  1AJD A;  2VQR A;  2W5Q A;  4GTX A;  3TWZ A;  5LQQ A;  4MY4 A;  2RH6 A;  1ALK A;  3CMR A;  3UN2 A;  1ZEF A;  3UNY A;  1AJC A;  3NKR A;  4GTY A;  4MHX A;  3UO0 A;  4CXK A;  3NVL A;  1ED9 A;  2X98 A;  3NKN A;  3SZY A;  4ZG6 A;  3DPC A;  1Y6V A;  1ZEB A;  4UOR A;  2IUC B;  4LRC A;  2W5T A;  3T01 A;  3BDG B;  1E2S P;  4LRE A;  4UOP A;  5INH A;  1ELY A;  2GSU A;  1KHK A;  4UPI A;  3IGY B;  2W5W A;  3TG0 A;  4LRB A;  1ALI A;  1KHN A;  1AJB A;  4GTZ A;  4CXU A;  2W5V A;  4UPK A;  4ZG7 A;  1ELZ A;  4LR9 A;  4LR8 A;  5KXA A;  3ED4 A;  2GA3 A;  3B5Q A;  2QZU A;  1O99 A;  1N2K A;  1O98 A;  3Q3Q A;  2XRG A;  4GTW A;  1HDH A;  4KAV A;  5L0B A;  1E33 P;  4NWJ A;  3WAY A;  3T00 A;  1KH5 A;  4KJG A;  5LRM A;  1EJJ A;  1ELX A;  3DYC A;  1KHL A;  3SZZ A;  4FDI A;  1P49 A;  3UN5 A;  4FDJ A;  3A52 A;  1ZED A;  4CXS A;  2W5R A;  4LR7 A;  3MK1 A;  2XR9 A;  3WAV A;  4LQY A;  1ANI A;  5K4P A;  3WAX A;  1ALH A;  3M8Y A;  5EGE A;  1EW8 A;  3MK0 A;  3OT9 A;  5C66 A;  1KH9 A;  1B8J A;  2GSO A;  3T02 A;  1ALJ A;  3BDH A;  5EGH A;  5LRN A;  1KHJ A;  4NWX A;  5GOV A;  2W8D A;  1SHN A;  4QAX A;  3NKQ A;  2GLQ A;  3NKP A;  3NKO A;  1Y7A A;  1EI6 A;  1ANJ A;  1AUK A;  1EW2 A;  1HQA A;  2ZKT A;  3TX0 A;  3UN3 A;  5L0E A;  3BDG A;  2D1G A;  4N7T A;  4LRA A;  1FSU A;  4LR2 A;  1E3C P;  3BDF A;  1SHQ A;  4MIV A;  3LXQ A;  4KM4 A;  3M8Z A;  5HRT A;  5DLT A;  3WAW A;  3M7V A;  1AJA A;  1EQJ A;  1K7H A;  1KH4 A;  4CYR A;  1HJK A;  4UPL A;  5DLV A;  1URA A;  1ED8 A;  4TN0 A;  4B56 A;  4YR1 A;  5AJ9 A;  5LIA A;  5GRR A;  1KH7 A;  4LRD A;  3MK2 A;  4LRF A;  5L0K A;  3NKM A;  3WBH A;  3KD8 A;  4KAY A;  3IDD A;  2G9Y A;  3M8W A;  4ZGA A;  5IJS A;  4UOO A;  1EW9 A;  4KJD A;  2GSN A;  1E1Z P;  1N2L A; 
#chains in the Genus database with same CATH topology
 2W5S A;  5IJQ A;  2W5X A;  2IUC A;  4ZG9 A;  3IGZ B;  4UPH A;  5TJ3 A;  2IFY A;  1URB A;  2ANH A;  5DLW A;  4CYS A;  3E2D A;  2W8S A;  1AJD A;  2VQR A;  2W5Q A;  4GTX A;  3TWZ A;  5LQQ A;  4MY4 A;  2RH6 A;  1ALK A;  3CMR A;  3UN2 A;  1ZEF A;  3UNY A;  1AJC A;  3NKR A;  4GTY A;  4MHX A;  3UO0 A;  4CXK A;  3NVL A;  1ED9 A;  2X98 A;  3NKN A;  3SZY A;  4ZG6 A;  3DPC A;  1Y6V A;  1ZEB A;  4UOR A;  2IUC B;  4LRC A;  2W5T A;  3T01 A;  3BDG B;  1E2S P;  4LRE A;  4UOP A;  5INH A;  1ELY A;  2GSU A;  1KHK A;  4UPI A;  3IGY B;  2W5W A;  3TG0 A;  4LRB A;  1ALI A;  1KHN A;  1AJB A;  4GTZ A;  4CXU A;  2W5V A;  4UPK A;  4ZG7 A;  1ELZ A;  4LR9 A;  4LR8 A;  5KXA A;  3ED4 A;  2GA3 A;  3B5Q A;  2QZU A;  1O99 A;  1N2K A;  1O98 A;  3Q3Q A;  2XRG A;  4GTW A;  1HDH A;  4KAV A;  5L0B A;  1E33 P;  4NWJ A;  3WAY A;  3T00 A;  1KH5 A;  4KJG A;  5LRM A;  1EJJ A;  1ELX A;  3DYC A;  1KHL A;  3SZZ A;  4FDI A;  1P49 A;  3UN5 A;  4FDJ A;  3A52 A;  1ZED A;  4CXS A;  2W5R A;  4LR7 A;  3MK1 A;  2XR9 A;  3WAV A;  4LQY A;  1ANI A;  5K4P A;  3WAX A;  1ALH A;  3M8Y A;  5EGE A;  1EW8 A;  3MK0 A;  3OT9 A;  5C66 A;  1KH9 A;  1B8J A;  2GSO A;  3T02 A;  1ALJ A;  3BDH A;  5EGH A;  5LRN A;  1KHJ A;  4NWX A;  5GOV A;  2W8D A;  1SHN A;  4QAX A;  3NKQ A;  2GLQ A;  3NKP A;  3NKO A;  1Y7A A;  1EI6 A;  1ANJ A;  1AUK A;  1EW2 A;  1HQA A;  2ZKT A;  3TX0 A;  3UN3 A;  5L0E A;  3BDG A;  2D1G A;  4N7T A;  4LRA A;  1FSU A;  4LR2 A;  1E3C P;  3BDF A;  1SHQ A;  4MIV A;  3LXQ A;  4KM4 A;  3M8Z A;  5HRT A;  5DLT A;  3WAW A;  3M7V A;  1AJA A;  1EQJ A;  1K7H A;  1KH4 A;  4CYR A;  1HJK A;  4UPL A;  5DLV A;  1URA A;  1ED8 A;  4TN0 A;  4B56 A;  4YR1 A;  5AJ9 A;  5LIA A;  5GRR A;  1KH7 A;  4LRD A;  3MK2 A;  4LRF A;  5L0K A;  3NKM A;  3WBH A;  3KD8 A;  4KAY A;  3IDD A;  2G9Y A;  3M8W A;  4ZGA A;  5IJS A;  4UOO A;  1EW9 A;  4KJD A;  2GSN A;  1E1Z P;  1N2L A; 
#chains in the Genus database with same CATH homology
 2W5S A;  5IJQ A;  2W5X A;  2IUC A;  4ZG9 A;  3IGZ B;  4UPH A;  5TJ3 A;  2IFY A;  1URB A;  2ANH A;  5DLW A;  4CYS A;  3E2D A;  2W8S A;  1AJD A;  2VQR A;  2W5Q A;  4GTX A;  3TWZ A;  5LQQ A;  4MY4 A;  2RH6 A;  1ALK A;  3CMR A;  3UN2 A;  1ZEF A;  3UNY A;  1AJC A;  3NKR A;  4GTY A;  4MHX A;  3UO0 A;  4CXK A;  3NVL A;  1ED9 A;  2X98 A;  3NKN A;  3SZY A;  4ZG6 A;  3DPC A;  1Y6V A;  1ZEB A;  4UOR A;  2IUC B;  4LRC A;  2W5T A;  3T01 A;  3BDG B;  1E2S P;  4LRE A;  4UOP A;  5INH A;  1ELY A;  2GSU A;  1KHK A;  4UPI A;  3IGY B;  2W5W A;  3TG0 A;  4LRB A;  1ALI A;  1KHN A;  1AJB A;  4GTZ A;  4CXU A;  2W5V A;  4UPK A;  4ZG7 A;  1ELZ A;  4LR9 A;  4LR8 A;  5KXA A;  3ED4 A;  2GA3 A;  3B5Q A;  2QZU A;  1O99 A;  1N2K A;  1O98 A;  3Q3Q A;  2XRG A;  4GTW A;  1HDH A;  4KAV A;  5L0B A;  1E33 P;  4NWJ A;  3WAY A;  3T00 A;  1KH5 A;  4KJG A;  5LRM A;  1EJJ A;  1ELX A;  3DYC A;  1KHL A;  3SZZ A;  4FDI A;  1P49 A;  3UN5 A;  4FDJ A;  3A52 A;  1ZED A;  4CXS A;  2W5R A;  4LR7 A;  3MK1 A;  2XR9 A;  3WAV A;  4LQY A;  1ANI A;  5K4P A;  3WAX A;  1ALH A;  3M8Y A;  5EGE A;  1EW8 A;  3MK0 A;  3OT9 A;  5C66 A;  1KH9 A;  1B8J A;  2GSO A;  3T02 A;  1ALJ A;  3BDH A;  5EGH A;  5LRN A;  1KHJ A;  4NWX A;  5GOV A;  2W8D A;  1SHN A;  4QAX A;  3NKQ A;  2GLQ A;  3NKP A;  3NKO A;  1Y7A A;  1EI6 A;  1ANJ A;  1AUK A;  1EW2 A;  1HQA A;  2ZKT A;  3TX0 A;  3UN3 A;  5L0E A;  3BDG A;  2D1G A;  4N7T A;  4LRA A;  1FSU A;  4LR2 A;  1E3C P;  3BDF A;  1SHQ A;  4MIV A;  3LXQ A;  4KM4 A;  3M8Z A;  5HRT A;  5DLT A;  3WAW A;  3M7V A;  1AJA A;  1EQJ A;  1K7H A;  1KH4 A;  4CYR A;  1HJK A;  4UPL A;  5DLV A;  1URA A;  1ED8 A;  4TN0 A;  4B56 A;  4YR1 A;  5AJ9 A;  5LIA A;  5GRR A;  1KH7 A;  4LRD A;  3MK2 A;  4LRF A;  5L0K A;  3NKM A;  3WBH A;  3KD8 A;  4KAY A;  3IDD A;  2G9Y A;  3M8W A;  4ZGA A;  5IJS A;  4UOO A;  1EW9 A;  4KJD A;  2GSN A;  1E1Z P;  1N2L A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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