3IDDA

Cofactor-independent phosphoglycerate mutase from thermoplasma acidophilum dsm 1728
Total Genus 112
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
112
Knots found
sequence length
395
structure length
364
Chain Sequence
KSIILIVLDGLGDRPGSDLQNRTPLQAAFRPNLNWLASHGINGIMHPISPSDTSHMSLLGYDPKVYYPGRGPFEALGLGMDIRPGDLAFRANFATNRDGVIVDRRAGRENKGNEELADAISLDMGEYSFRVKSGVEHRAALVVSGPDLSDMIGDSDPHREGLPPEKIRPTDPSGDRTAEVMNAYLEEARRILSDHRVNKERVKNGRLPGNELLVRSAGKVPAIPSFTEKNRMKGACVVGSPWLKGLCRLLRMDVFDVPSNYRGKIEKAVDLTSSHDFVLVNIKNYPLKRDVIEDIDRAMEPLKSIGDHAVICVTGDHSDPVPIVFYTDGVMNDGVHLFDELSSASGSLRITSYNVMDILMQLAG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Cofactor-Independent Phosphoglycerate Mutase from Thermoplasma acidophilum DSM 1728
rcsb
source organism Thermoplasma acidophilum
molecule tags Isomerase
molecule keywords 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
total genus 112
structure length 364
sequence length 395
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 5.4.2.12: Phosphoglycerate mutase (2,3-diphosphoglycerate-independent).
pdb deposition date 2009-07-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01676 Metalloenzyme Metalloenzyme superfamily
A PF10143 PhosphMutase 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3iddA01
1EW8A 2VQRA 5AJ9A 2W5SA 1ZEDA 4FDIA 3UN2A 4UOOA 1AJDA 4UPLA 2GSOA 3E2DA 3MK2A 1ELXA 3MK0A 4KJDA 3WAVA 5INHA 1KH9A 1ELYA 1EQJA 3IDDA 2GA3A 3WAWA 4GTZA 3UN3A 3NKOA 3NKNA 4LRBA 1EI6A 3CMRA 1URBA 5K4PA 2W8DA 3LXQA 4MHXA 3NVLA 1ED9A 4UORA 4UPIA 2XR9A 3M8ZA 3T00A 4LRAA 2X98A 1EW2A 4TN0A 5GOVA 4ZG9A 3SZYA 3M8WA 3WBHA 2XRGA 4LR8A 4KJGA 4QAXA 4GTYA 1ED8A 2IUCA 3BDFA 3IGYB 2W8SA 3BDGA 4NWJA 4UOPA 2W5VA 2RH6A 3DPCA 5KXAA 5L0BA 4ZGAA 1SHNA 1KH4A 3OT9A 5EGEA 3T01A 4YR1A 1KHKA 1ZEFA 3Q3QA 3WAXA 4LRFA 5DLWA 2GLQA 1ANJA 4CXKA 5LRMA 4CXUA 1E1ZP 3B5QA 2IFYA 3UO0A 4NWXA 3UNYA 4CYRA 1K7HA 4FDJA 5EGHA 3A52A 3NKMA 3M7VA 3NKQA 3TX0A 1URAA 4MY4A 1AJAA 2D1GA 3M8YA 4LREA 5DLTA 4LR9A 1FSUA 1N2LA 4LR2A 3UN5A 1ALIA 5IJSA 1E2SP 1EJJA 2ANHA 2G9YA 2W5TA 2W5QA 1P49A 1E3CP 1B8JA 4ZG7A 1EW9A 2W5WA 3T02A 5LIAA 4GTXA 5L0KA 1ALHA 2W5RA 4LQYA 1KHNA 5HRTA 4KAYA 3TG0A 3IGZB 4LR7A 1ALKA 5LQQA 3SZZA 4B56A 5L0EA 4N7TA 4MIVA 1ANIA 3BDHA 4LRDA 1E33P 3MK1A 1KHLA 1O99A 1Y7AA 3NKPA 2QZUA 4KAVA 4KM4A 1ALJA 2IUCB 1HDHA 3KD8A 4UPHA 5GRRA 5IJQA 4CYSA 1N2KA 5DLVA 3WAYA 1KHJA 1KH7A 3DYCA 3NKRA 1Y6VA 2W5XA 3BDGB 2ZKTA 1O98A 4GTWA 1SHQA 1ZEBA 3TWZA 1HQAA 4ZG6A 1ELZA 2GSNA 1AUKA 1AJCA 4LRCA 5TJ3A 5C66A 4CXSA 4UPKA 1KH5A 5LRNA 3ED4A 2GSUA 1HJKA 1AJBA
chains in the Genus database with same CATH superfamily
1EW8A 2VQRA 5AJ9A 2W5SA 1ZEDA 4FDIA 3UN2A 4UOOA 1AJDA 4UPLA 2GSOA 3E2DA 3MK2A 1ELXA 3MK0A 4KJDA 3WAVA 5INHA 1KH9A 1ELYA 1EQJA 3IDDA 2GA3A 3WAWA 4GTZA 3UN3A 3NKOA 3NKNA 4LRBA 1EI6A 3CMRA 1URBA 5K4PA 2W8DA 3LXQA 4MHXA 3NVLA 1ED9A 4UORA 4UPIA 2XR9A 3M8ZA 3T00A 4LRAA 2X98A 1EW2A 4TN0A 5GOVA 4ZG9A 3SZYA 3M8WA 3WBHA 2XRGA 4LR8A 4KJGA 4QAXA 4GTYA 1ED8A 2IUCA 3BDFA 3IGYB 2W8SA 3BDGA 4NWJA 4UOPA 2W5VA 2RH6A 3DPCA 5KXAA 5L0BA 4ZGAA 1SHNA 1KH4A 3OT9A 5EGEA 3T01A 4YR1A 1KHKA 1ZEFA 3Q3QA 3WAXA 4LRFA 5DLWA 2GLQA 1ANJA 4CXKA 5LRMA 4CXUA 1E1ZP 3B5QA 2IFYA 3UO0A 4NWXA 3UNYA 4CYRA 1K7HA 4FDJA 5EGHA 3A52A 3NKMA 3M7VA 3NKQA 3TX0A 1URAA 4MY4A 1AJAA 2D1GA 3M8YA 4LREA 5DLTA 4LR9A 1FSUA 1N2LA 4LR2A 3UN5A 1ALIA 5IJSA 1E2SP 1EJJA 2ANHA 2G9YA 2W5TA 2W5QA 1P49A 1E3CP 1B8JA 4ZG7A 1EW9A 2W5WA 3T02A 5LIAA 4GTXA 5L0KA 1ALHA 2W5RA 4LQYA 1KHNA 5HRTA 4KAYA 3TG0A 3IGZB 4LR7A 1ALKA 5LQQA 3SZZA 4B56A 5L0EA 4N7TA 4MIVA 1ANIA 3BDHA 4LRDA 1E33P 3MK1A 1KHLA 1O99A 1Y7AA 3NKPA 2QZUA 4KAVA 4KM4A 1ALJA 2IUCB 1HDHA 3KD8A 4UPHA 5GRRA 5IJQA 4CYSA 1N2KA 5DLVA 3WAYA 1KHJA 1KH7A 3DYCA 3NKRA 1Y6VA 2W5XA 3BDGB 2ZKTA 1O98A 4GTWA 1SHQA 1ZEBA 3TWZA 1HQAA 4ZG6A 1ELZA 2GSNA 1AUKA 1AJCA 4LRCA 5TJ3A 5C66A 4CXSA 4UPKA 1KH5A 5LRNA 3ED4A 2GSUA 1HJKA 1AJBA
chains in the Genus database with same CATH topology
1EW8A 2VQRA 5AJ9A 2W5SA 1ZEDA 4FDIA 3UN2A 4UOOA 1AJDA 4UPLA 2GSOA 3E2DA 3MK2A 1ELXA 3MK0A 4KJDA 3WAVA 5INHA 1KH9A 1ELYA 1EQJA 3IDDA 2GA3A 3WAWA 4GTZA 3UN3A 3NKOA 3NKNA 4LRBA 1EI6A 3CMRA 1URBA 5K4PA 2W8DA 3LXQA 4MHXA 3NVLA 1ED9A 4UORA 4UPIA 2XR9A 3M8ZA 3T00A 4LRAA 2X98A 1EW2A 4TN0A 5GOVA 4ZG9A 3SZYA 3M8WA 3WBHA 2XRGA 4LR8A 4KJGA 4QAXA 4GTYA 1ED8A 2IUCA 3BDFA 3IGYB 2W8SA 3BDGA 4NWJA 4UOPA 2W5VA 2RH6A 3DPCA 5KXAA 5L0BA 4ZGAA 1SHNA 1KH4A 3OT9A 5EGEA 3T01A 4YR1A 1KHKA 1ZEFA 3Q3QA 3WAXA 4LRFA 5DLWA 2GLQA 1ANJA 4CXKA 5LRMA 4CXUA 1E1ZP 3B5QA 2IFYA 3UO0A 4NWXA 3UNYA 4CYRA 1K7HA 4FDJA 5EGHA 3A52A 3NKMA 3M7VA 3NKQA 3TX0A 1URAA 4MY4A 1AJAA 2D1GA 3M8YA 4LREA 5DLTA 4LR9A 1FSUA 1N2LA 4LR2A 3UN5A 1ALIA 5IJSA 1E2SP 1EJJA 2ANHA 2G9YA 2W5TA 2W5QA 1P49A 1E3CP 1B8JA 4ZG7A 1EW9A 2W5WA 3T02A 5LIAA 4GTXA 5L0KA 1ALHA 2W5RA 4LQYA 1KHNA 5HRTA 4KAYA 3TG0A 3IGZB 4LR7A 1ALKA 5LQQA 3SZZA 4B56A 5L0EA 4N7TA 4MIVA 1ANIA 3BDHA 4LRDA 1E33P 3MK1A 1KHLA 1O99A 1Y7AA 3NKPA 2QZUA 4KAVA 4KM4A 1ALJA 2IUCB 1HDHA 3KD8A 4UPHA 5GRRA 5IJQA 4CYSA 1N2KA 5DLVA 3WAYA 1KHJA 1KH7A 3DYCA 3NKRA 1Y6VA 2W5XA 3BDGB 2ZKTA 1O98A 4GTWA 1SHQA 1ZEBA 3TWZA 1HQAA 4ZG6A 1ELZA 2GSNA 1AUKA 1AJCA 4LRCA 5TJ3A 5C66A 4CXSA 4UPKA 1KH5A 5LRNA 3ED4A 2GSUA 1HJKA 1AJBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EW8 A;  2VQR A;  5AJ9 A;  2W5S A;  1ZED A;  4FDI A;  3UN2 A;  4UOO A;  1AJD A;  4UPL A;  2GSO A;  3E2D A;  3MK2 A;  1ELX A;  3MK0 A;  4KJD A;  3WAV A;  5INH A;  1KH9 A;  1ELY A;  1EQJ A;  3IDD A;  2GA3 A;  3WAW A;  4GTZ A;  3UN3 A;  3NKO A;  3NKN A;  4LRB A;  1EI6 A;  3CMR A;  1URB A;  5K4P A;  2W8D A;  3LXQ A;  4MHX A;  3NVL A;  1ED9 A;  4UOR A;  4UPI A;  2XR9 A;  3M8Z A;  3T00 A;  4LRA A;  2X98 A;  1EW2 A;  4TN0 A;  5GOV A;  4ZG9 A;  3SZY A;  3M8W A;  3WBH A;  2XRG A;  4LR8 A;  4KJG A;  4QAX A;  4GTY A;  1ED8 A;  2IUC A;  3BDF A;  3IGY B;  2W8S A;  3BDG A;  4NWJ A;  4UOP A;  2W5V A;  2RH6 A;  3DPC A;  5KXA A;  5L0B A;  4ZGA A;  1SHN A;  1KH4 A;  3OT9 A;  5EGE A;  3T01 A;  4YR1 A;  1KHK A;  1ZEF A;  3Q3Q A;  3WAX A;  4LRF A;  5DLW A;  2GLQ A;  1ANJ A;  4CXK A;  5LRM A;  4CXU A;  1E1Z P;  3B5Q A;  2IFY A;  3UO0 A;  4NWX A;  3UNY A;  4CYR A;  1K7H A;  4FDJ A;  5EGH A;  3A52 A;  3NKM A;  3M7V A;  3NKQ A;  3TX0 A;  1URA A;  4MY4 A;  1AJA A;  2D1G A;  3M8Y A;  4LRE A;  5DLT A;  4LR9 A;  1FSU A;  1N2L A;  4LR2 A;  3UN5 A;  1ALI A;  5IJS A;  1E2S P;  1EJJ A;  2ANH A;  2G9Y A;  2W5T A;  2W5Q A;  1P49 A;  1E3C P;  1B8J A;  4ZG7 A;  1EW9 A;  2W5W A;  3T02 A;  5LIA A;  4GTX A;  5L0K A;  1ALH A;  2W5R A;  4LQY A;  1KHN A;  5HRT A;  4KAY A;  3TG0 A;  3IGZ B;  4LR7 A;  1ALK A;  5LQQ A;  3SZZ A;  4B56 A;  5L0E A;  4N7T A;  4MIV A;  1ANI A;  3BDH A;  4LRD A;  1E33 P;  3MK1 A;  1KHL A;  1O99 A;  1Y7A A;  3NKP A;  2QZU A;  4KAV A;  4KM4 A;  1ALJ A;  2IUC B;  1HDH A;  3KD8 A;  4UPH A;  5GRR A;  5IJQ A;  4CYS A;  1N2K A;  5DLV A;  3WAY A;  1KHJ A;  1KH7 A;  3DYC A;  3NKR A;  1Y6V A;  2W5X A;  3BDG B;  2ZKT A;  1O98 A;  4GTW A;  1SHQ A;  1ZEB A;  3TWZ A;  1HQA A;  4ZG6 A;  1ELZ A;  2GSN A;  1AUK A;  1AJC A;  4LRC A;  5TJ3 A;  5C66 A;  4CXS A;  4UPK A;  1KH5 A;  5LRN A;  3ED4 A;  2GSU A;  1HJK A;  1AJB A; 
#chains in the Genus database with same CATH topology
 1EW8 A;  2VQR A;  5AJ9 A;  2W5S A;  1ZED A;  4FDI A;  3UN2 A;  4UOO A;  1AJD A;  4UPL A;  2GSO A;  3E2D A;  3MK2 A;  1ELX A;  3MK0 A;  4KJD A;  3WAV A;  5INH A;  1KH9 A;  1ELY A;  1EQJ A;  3IDD A;  2GA3 A;  3WAW A;  4GTZ A;  3UN3 A;  3NKO A;  3NKN A;  4LRB A;  1EI6 A;  3CMR A;  1URB A;  5K4P A;  2W8D A;  3LXQ A;  4MHX A;  3NVL A;  1ED9 A;  4UOR A;  4UPI A;  2XR9 A;  3M8Z A;  3T00 A;  4LRA A;  2X98 A;  1EW2 A;  4TN0 A;  5GOV A;  4ZG9 A;  3SZY A;  3M8W A;  3WBH A;  2XRG A;  4LR8 A;  4KJG A;  4QAX A;  4GTY A;  1ED8 A;  2IUC A;  3BDF A;  3IGY B;  2W8S A;  3BDG A;  4NWJ A;  4UOP A;  2W5V A;  2RH6 A;  3DPC A;  5KXA A;  5L0B A;  4ZGA A;  1SHN A;  1KH4 A;  3OT9 A;  5EGE A;  3T01 A;  4YR1 A;  1KHK A;  1ZEF A;  3Q3Q A;  3WAX A;  4LRF A;  5DLW A;  2GLQ A;  1ANJ A;  4CXK A;  5LRM A;  4CXU A;  1E1Z P;  3B5Q A;  2IFY A;  3UO0 A;  4NWX A;  3UNY A;  4CYR A;  1K7H A;  4FDJ A;  5EGH A;  3A52 A;  3NKM A;  3M7V A;  3NKQ A;  3TX0 A;  1URA A;  4MY4 A;  1AJA A;  2D1G A;  3M8Y A;  4LRE A;  5DLT A;  4LR9 A;  1FSU A;  1N2L A;  4LR2 A;  3UN5 A;  1ALI A;  5IJS A;  1E2S P;  1EJJ A;  2ANH A;  2G9Y A;  2W5T A;  2W5Q A;  1P49 A;  1E3C P;  1B8J A;  4ZG7 A;  1EW9 A;  2W5W A;  3T02 A;  5LIA A;  4GTX A;  5L0K A;  1ALH A;  2W5R A;  4LQY A;  1KHN A;  5HRT A;  4KAY A;  3TG0 A;  3IGZ B;  4LR7 A;  1ALK A;  5LQQ A;  3SZZ A;  4B56 A;  5L0E A;  4N7T A;  4MIV A;  1ANI A;  3BDH A;  4LRD A;  1E33 P;  3MK1 A;  1KHL A;  1O99 A;  1Y7A A;  3NKP A;  2QZU A;  4KAV A;  4KM4 A;  1ALJ A;  2IUC B;  1HDH A;  3KD8 A;  4UPH A;  5GRR A;  5IJQ A;  4CYS A;  1N2K A;  5DLV A;  3WAY A;  1KHJ A;  1KH7 A;  3DYC A;  3NKR A;  1Y6V A;  2W5X A;  3BDG B;  2ZKT A;  1O98 A;  4GTW A;  1SHQ A;  1ZEB A;  3TWZ A;  1HQA A;  4ZG6 A;  1ELZ A;  2GSN A;  1AUK A;  1AJC A;  4LRC A;  5TJ3 A;  5C66 A;  4CXS A;  4UPK A;  1KH5 A;  5LRN A;  3ED4 A;  2GSU A;  1HJK A;  1AJB A; 
#chains in the Genus database with same CATH homology
 1EW8 A;  2VQR A;  5AJ9 A;  2W5S A;  1ZED A;  4FDI A;  3UN2 A;  4UOO A;  1AJD A;  4UPL A;  2GSO A;  3E2D A;  3MK2 A;  1ELX A;  3MK0 A;  4KJD A;  3WAV A;  5INH A;  1KH9 A;  1ELY A;  1EQJ A;  3IDD A;  2GA3 A;  3WAW A;  4GTZ A;  3UN3 A;  3NKO A;  3NKN A;  4LRB A;  1EI6 A;  3CMR A;  1URB A;  5K4P A;  2W8D A;  3LXQ A;  4MHX A;  3NVL A;  1ED9 A;  4UOR A;  4UPI A;  2XR9 A;  3M8Z A;  3T00 A;  4LRA A;  2X98 A;  1EW2 A;  4TN0 A;  5GOV A;  4ZG9 A;  3SZY A;  3M8W A;  3WBH A;  2XRG A;  4LR8 A;  4KJG A;  4QAX A;  4GTY A;  1ED8 A;  2IUC A;  3BDF A;  3IGY B;  2W8S A;  3BDG A;  4NWJ A;  4UOP A;  2W5V A;  2RH6 A;  3DPC A;  5KXA A;  5L0B A;  4ZGA A;  1SHN A;  1KH4 A;  3OT9 A;  5EGE A;  3T01 A;  4YR1 A;  1KHK A;  1ZEF A;  3Q3Q A;  3WAX A;  4LRF A;  5DLW A;  2GLQ A;  1ANJ A;  4CXK A;  5LRM A;  4CXU A;  1E1Z P;  3B5Q A;  2IFY A;  3UO0 A;  4NWX A;  3UNY A;  4CYR A;  1K7H A;  4FDJ A;  5EGH A;  3A52 A;  3NKM A;  3M7V A;  3NKQ A;  3TX0 A;  1URA A;  4MY4 A;  1AJA A;  2D1G A;  3M8Y A;  4LRE A;  5DLT A;  4LR9 A;  1FSU A;  1N2L A;  4LR2 A;  3UN5 A;  1ALI A;  5IJS A;  1E2S P;  1EJJ A;  2ANH A;  2G9Y A;  2W5T A;  2W5Q A;  1P49 A;  1E3C P;  1B8J A;  4ZG7 A;  1EW9 A;  2W5W A;  3T02 A;  5LIA A;  4GTX A;  5L0K A;  1ALH A;  2W5R A;  4LQY A;  1KHN A;  5HRT A;  4KAY A;  3TG0 A;  3IGZ B;  4LR7 A;  1ALK A;  5LQQ A;  3SZZ A;  4B56 A;  5L0E A;  4N7T A;  4MIV A;  1ANI A;  3BDH A;  4LRD A;  1E33 P;  3MK1 A;  1KHL A;  1O99 A;  1Y7A A;  3NKP A;  2QZU A;  4KAV A;  4KM4 A;  1ALJ A;  2IUC B;  1HDH A;  3KD8 A;  4UPH A;  5GRR A;  5IJQ A;  4CYS A;  1N2K A;  5DLV A;  3WAY A;  1KHJ A;  1KH7 A;  3DYC A;  3NKR A;  1Y6V A;  2W5X A;  3BDG B;  2ZKT A;  1O98 A;  4GTW A;  1SHQ A;  1ZEB A;  3TWZ A;  1HQA A;  4ZG6 A;  1ELZ A;  2GSN A;  1AUK A;  1AJC A;  4LRC A;  5TJ3 A;  5C66 A;  4CXS A;  4UPK A;  1KH5 A;  5LRN A;  3ED4 A;  2GSU A;  1HJK A;  1AJB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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