3IDDA

Cofactor-independent phosphoglycerate mutase from thermoplasma acidophilum dsm 1728
Total Genus 112
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
112
Knots found
sequence length
395
structure length
364
Chain Sequence
KSIILIVLDGLGDRPGSDLQNRTPLQAAFRPNLNWLASHGINGIMHPISPSDTSHMSLLGYDPKVYYPGRGPFEALGLGMDIRPGDLAFRANFATNRDGVIVDRRAGRENKGNEELADAISLDMGEYSFRVKSGVEHRAALVVSGPDLSDMIGDSDPHREGLPPEKIRPTDPSGDRTAEVMNAYLEEARRILSDHRVNKERVKNGRLPGNELLVRSAGKVPAIPSFTEKNRMKGACVVGSPWLKGLCRLLRMDVFDVPSNYRGKIEKAVDLTSSHDFVLVNIKNYPLKRDVIEDIDRAMEPLKSIGDHAVICVTGDHSDPVPIVFYTDGVMNDGVHLFDELSSASGSLRITSYNVMDILMQLAG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
publication title Cofactor-Independent Phosphoglycerate Mutase from Thermoplasma acidophilum DSM 1728
rcsb
source organism Thermoplasma acidophilum
molecule tags Isomerase
total genus 112
structure length 364
sequence length 395
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 5.4.2.12: Phosphoglycerate mutase (2,3-diphosphoglycerate-independent).
pdb deposition date 2009-07-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01676 Metalloenzyme Metalloenzyme superfamily
A PF10143 PhosphMutase 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3iddA01
1KH7A 4YR1A 3MK0A 5C66A 1ED8A 5KXAA 3TWZA 5EGEA 5LQQA 4TN0A 5DLTA 3BDGB 1E1ZP 2GSNA 3IGZB 3NKQA 3SZYA 4CYRA 4UPHA 1EQJA 1B8JA 5IJQA 1URBA 3BDFA 5GRRA 1Y6VA 5IJSA 3BDHA 4UPKA 4UPLA 1ZEBA 1ZEDA 1E33P 4MY4A 4GTXA 5L0BA 1KHNA 2W8DA 3NKOA 3UO0A 4FDJA 1P49A 4LR2A 3UNYA 3NKRA 3WBHA 4ZG9A 1URAA 3NKPA 4NWXA 1HJKA 4FDIA 3LXQA 2IUCB 1ELXA 4LR7A 1ED9A 3OT9A 2W5TA 3BDGA 1ELYA 5HRTA 3WAYA 3B5QA 3M8YA 5EGHA 2QZUA 3M8WA 2GSUA 1KHLA 2ZKTA 1K7HA 1ZEFA 2IFYA 1SHQA 4NWJA 1AJBA 1ALJA 1EW8A 4CYSA 4GTZA 4LRBA 5LRMA 1E2SP 2RH6A 1O99A 3MK1A 2G9YA 3T01A 2IUCA 1ANIA 4LRCA 3MK2A 1N2LA 3DYCA 3UN5A 5DLVA 4LQYA 4UOOA 1AUKA 3TG0A 3CMRA 1FSUA 3IGYB 2D1GA 1KH4A 5TJ3A 5L0KA 4B56A 3T02A 5GOVA 3NKMA 1Y7AA 3SZZA 4KJDA 4LRDA 4LR9A 3ED4A 4MHXA 3T00A 5AJ9A 1AJDA 2GSOA 4CXSA 5INHA 4ZG7A 5L0EA 3KD8A 4N7TA 1KH5A 3M7VA 1N2KA 2W5QA 1HQAA 3IDDA 2X98A 4LRFA 4LR8A 3UN3A 4KAYA 4UPIA 4KAVA 2ANHA 2XRGA 3WAWA 2W5SA 4ZGAA 2W5RA 1EI6A 3UN2A 4LREA 4GTWA 4ZG6A 2W5VA 1O98A 4UOPA 1ALKA 1KHKA 4CXKA 2VQRA 4KM4A 2XR9A 3E2DA 1ALIA 3NKNA 1EJJA 1ELZA 4QAXA 1E3CP 1ALHA 3NVLA 1AJCA 3TX0A 3WAXA 2GLQA 1HDHA 1KH9A 2GA3A 4GTYA 3Q3QA 3M8ZA 4LRAA 1AJAA 4MIVA 5DLWA 2W5WA 5LIAA 1SHNA 4KJGA 4UORA 5LRNA 2W5XA 2W8SA 3A52A 1ANJA 3WAVA 4CXUA 1KHJA 3DPCA 1EW9A 1EW2A 5K4PA
chains in the Genus database with same CATH superfamily
1KH7A 4YR1A 3MK0A 5C66A 1ED8A 5KXAA 3TWZA 5EGEA 5LQQA 4TN0A 5DLTA 3BDGB 1E1ZP 2GSNA 3IGZB 3NKQA 3SZYA 4CYRA 4UPHA 1EQJA 1B8JA 5IJQA 1URBA 3BDFA 5GRRA 1Y6VA 5IJSA 3BDHA 4UPKA 4UPLA 1ZEBA 1ZEDA 1E33P 4MY4A 4GTXA 5L0BA 1KHNA 2W8DA 3NKOA 3UO0A 4FDJA 1P49A 4LR2A 3UNYA 3NKRA 3WBHA 4ZG9A 1URAA 3NKPA 4NWXA 1HJKA 4FDIA 3LXQA 2IUCB 1ELXA 4LR7A 1ED9A 3OT9A 2W5TA 3BDGA 1ELYA 5HRTA 3WAYA 3B5QA 3M8YA 5EGHA 2QZUA 3M8WA 2GSUA 1KHLA 2ZKTA 1K7HA 1ZEFA 2IFYA 1SHQA 4NWJA 1AJBA 1ALJA 1EW8A 4CYSA 4GTZA 4LRBA 5LRMA 1E2SP 2RH6A 1O99A 3MK1A 2G9YA 3T01A 2IUCA 1ANIA 4LRCA 3MK2A 1N2LA 3DYCA 3UN5A 5DLVA 4LQYA 4UOOA 1AUKA 3TG0A 3CMRA 1FSUA 3IGYB 2D1GA 1KH4A 5TJ3A 5L0KA 4B56A 3T02A 5GOVA 3NKMA 1Y7AA 3SZZA 4KJDA 4LRDA 4LR9A 3ED4A 4MHXA 3T00A 5AJ9A 1AJDA 2GSOA 4CXSA 5INHA 4ZG7A 5L0EA 3KD8A 4N7TA 1KH5A 3M7VA 1N2KA 2W5QA 1HQAA 3IDDA 2X98A 4LRFA 4LR8A 3UN3A 4KAYA 4UPIA 4KAVA 2ANHA 2XRGA 3WAWA 2W5SA 4ZGAA 2W5RA 1EI6A 3UN2A 4LREA 4GTWA 4ZG6A 2W5VA 1O98A 4UOPA 1ALKA 1KHKA 4CXKA 2VQRA 4KM4A 2XR9A 3E2DA 1ALIA 3NKNA 1EJJA 1ELZA 4QAXA 1E3CP 1ALHA 3NVLA 1AJCA 3TX0A 3WAXA 2GLQA 1HDHA 1KH9A 2GA3A 4GTYA 3Q3QA 3M8ZA 4LRAA 1AJAA 4MIVA 5DLWA 2W5WA 5LIAA 1SHNA 4KJGA 4UORA 5LRNA 2W5XA 2W8SA 3A52A 1ANJA 3WAVA 4CXUA 1KHJA 3DPCA 1EW9A 1EW2A 5K4PA
chains in the Genus database with same CATH topology
1KH7A 4YR1A 3MK0A 5C66A 1ED8A 5KXAA 3TWZA 5EGEA 5LQQA 4TN0A 5DLTA 3BDGB 1E1ZP 2GSNA 3IGZB 3NKQA 3SZYA 4CYRA 4UPHA 1EQJA 1B8JA 5IJQA 1URBA 3BDFA 5GRRA 1Y6VA 5IJSA 3BDHA 4UPKA 4UPLA 1ZEBA 1ZEDA 1E33P 4MY4A 4GTXA 5L0BA 1KHNA 2W8DA 3NKOA 3UO0A 4FDJA 1P49A 4LR2A 3UNYA 3NKRA 3WBHA 4ZG9A 1URAA 3NKPA 4NWXA 1HJKA 4FDIA 3LXQA 2IUCB 1ELXA 4LR7A 1ED9A 3OT9A 2W5TA 3BDGA 1ELYA 5HRTA 3WAYA 3B5QA 3M8YA 5EGHA 2QZUA 3M8WA 2GSUA 1KHLA 2ZKTA 1K7HA 1ZEFA 2IFYA 1SHQA 4NWJA 1AJBA 1ALJA 1EW8A 4CYSA 4GTZA 4LRBA 5LRMA 1E2SP 2RH6A 1O99A 3MK1A 2G9YA 3T01A 2IUCA 1ANIA 4LRCA 3MK2A 1N2LA 3DYCA 3UN5A 5DLVA 4LQYA 4UOOA 1AUKA 3TG0A 3CMRA 1FSUA 3IGYB 2D1GA 1KH4A 5TJ3A 5L0KA 4B56A 3T02A 5GOVA 3NKMA 1Y7AA 3SZZA 4KJDA 4LRDA 4LR9A 3ED4A 4MHXA 3T00A 5AJ9A 1AJDA 2GSOA 4CXSA 5INHA 4ZG7A 5L0EA 3KD8A 4N7TA 1KH5A 3M7VA 1N2KA 2W5QA 1HQAA 3IDDA 2X98A 4LRFA 4LR8A 3UN3A 4KAYA 4UPIA 4KAVA 2ANHA 2XRGA 3WAWA 2W5SA 4ZGAA 2W5RA 1EI6A 3UN2A 4LREA 4GTWA 4ZG6A 2W5VA 1O98A 4UOPA 1ALKA 1KHKA 4CXKA 2VQRA 4KM4A 2XR9A 3E2DA 1ALIA 3NKNA 1EJJA 1ELZA 4QAXA 1E3CP 1ALHA 3NVLA 1AJCA 3TX0A 3WAXA 2GLQA 1HDHA 1KH9A 2GA3A 4GTYA 3Q3QA 3M8ZA 4LRAA 1AJAA 4MIVA 5DLWA 2W5WA 5LIAA 1SHNA 4KJGA 4UORA 5LRNA 2W5XA 2W8SA 3A52A 1ANJA 3WAVA 4CXUA 1KHJA 3DPCA 1EW9A 1EW2A 5K4PA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KH7 A;  4YR1 A;  3MK0 A;  5C66 A;  1ED8 A;  5KXA A;  3TWZ A;  5EGE A;  5LQQ A;  4TN0 A;  5DLT A;  3BDG B;  1E1Z P;  2GSN A;  3IGZ B;  3NKQ A;  3SZY A;  4CYR A;  4UPH A;  1EQJ A;  1B8J A;  5IJQ A;  1URB A;  3BDF A;  5GRR A;  1Y6V A;  5IJS A;  3BDH A;  4UPK A;  4UPL A;  1ZEB A;  1ZED A;  1E33 P;  4MY4 A;  4GTX A;  5L0B A;  1KHN A;  2W8D A;  3NKO A;  3UO0 A;  4FDJ A;  1P49 A;  4LR2 A;  3UNY A;  3NKR A;  3WBH A;  4ZG9 A;  1URA A;  3NKP A;  4NWX A;  1HJK A;  4FDI A;  3LXQ A;  2IUC B;  1ELX A;  4LR7 A;  1ED9 A;  3OT9 A;  2W5T A;  3BDG A;  1ELY A;  5HRT A;  3WAY A;  3B5Q A;  3M8Y A;  5EGH A;  2QZU A;  3M8W A;  2GSU A;  1KHL A;  2ZKT A;  1K7H A;  1ZEF A;  2IFY A;  1SHQ A;  4NWJ A;  1AJB A;  1ALJ A;  1EW8 A;  4CYS A;  4GTZ A;  4LRB A;  5LRM A;  1E2S P;  2RH6 A;  1O99 A;  3MK1 A;  2G9Y A;  3T01 A;  2IUC A;  1ANI A;  4LRC A;  3MK2 A;  1N2L A;  3DYC A;  3UN5 A;  5DLV A;  4LQY A;  4UOO A;  1AUK A;  3TG0 A;  3CMR A;  1FSU A;  3IGY B;  2D1G A;  1KH4 A;  5TJ3 A;  5L0K A;  4B56 A;  3T02 A;  5GOV A;  3NKM A;  1Y7A A;  3SZZ A;  4KJD A;  4LRD A;  4LR9 A;  3ED4 A;  4MHX A;  3T00 A;  5AJ9 A;  1AJD A;  2GSO A;  4CXS A;  5INH A;  4ZG7 A;  5L0E A;  3KD8 A;  4N7T A;  1KH5 A;  3M7V A;  1N2K A;  2W5Q A;  1HQA A;  3IDD A;  2X98 A;  4LRF A;  4LR8 A;  3UN3 A;  4KAY A;  4UPI A;  4KAV A;  2ANH A;  2XRG A;  3WAW A;  2W5S A;  4ZGA A;  2W5R A;  1EI6 A;  3UN2 A;  4LRE A;  4GTW A;  4ZG6 A;  2W5V A;  1O98 A;  4UOP A;  1ALK A;  1KHK A;  4CXK A;  2VQR A;  4KM4 A;  2XR9 A;  3E2D A;  1ALI A;  3NKN A;  1EJJ A;  1ELZ A;  4QAX A;  1E3C P;  1ALH A;  3NVL A;  1AJC A;  3TX0 A;  3WAX A;  2GLQ A;  1HDH A;  1KH9 A;  2GA3 A;  4GTY A;  3Q3Q A;  3M8Z A;  4LRA A;  1AJA A;  4MIV A;  5DLW A;  2W5W A;  5LIA A;  1SHN A;  4KJG A;  4UOR A;  5LRN A;  2W5X A;  2W8S A;  3A52 A;  1ANJ A;  3WAV A;  4CXU A;  1KHJ A;  3DPC A;  1EW9 A;  1EW2 A;  5K4P A; 
#chains in the Genus database with same CATH topology
 1KH7 A;  4YR1 A;  3MK0 A;  5C66 A;  1ED8 A;  5KXA A;  3TWZ A;  5EGE A;  5LQQ A;  4TN0 A;  5DLT A;  3BDG B;  1E1Z P;  2GSN A;  3IGZ B;  3NKQ A;  3SZY A;  4CYR A;  4UPH A;  1EQJ A;  1B8J A;  5IJQ A;  1URB A;  3BDF A;  5GRR A;  1Y6V A;  5IJS A;  3BDH A;  4UPK A;  4UPL A;  1ZEB A;  1ZED A;  1E33 P;  4MY4 A;  4GTX A;  5L0B A;  1KHN A;  2W8D A;  3NKO A;  3UO0 A;  4FDJ A;  1P49 A;  4LR2 A;  3UNY A;  3NKR A;  3WBH A;  4ZG9 A;  1URA A;  3NKP A;  4NWX A;  1HJK A;  4FDI A;  3LXQ A;  2IUC B;  1ELX A;  4LR7 A;  1ED9 A;  3OT9 A;  2W5T A;  3BDG A;  1ELY A;  5HRT A;  3WAY A;  3B5Q A;  3M8Y A;  5EGH A;  2QZU A;  3M8W A;  2GSU A;  1KHL A;  2ZKT A;  1K7H A;  1ZEF A;  2IFY A;  1SHQ A;  4NWJ A;  1AJB A;  1ALJ A;  1EW8 A;  4CYS A;  4GTZ A;  4LRB A;  5LRM A;  1E2S P;  2RH6 A;  1O99 A;  3MK1 A;  2G9Y A;  3T01 A;  2IUC A;  1ANI A;  4LRC A;  3MK2 A;  1N2L A;  3DYC A;  3UN5 A;  5DLV A;  4LQY A;  4UOO A;  1AUK A;  3TG0 A;  3CMR A;  1FSU A;  3IGY B;  2D1G A;  1KH4 A;  5TJ3 A;  5L0K A;  4B56 A;  3T02 A;  5GOV A;  3NKM A;  1Y7A A;  3SZZ A;  4KJD A;  4LRD A;  4LR9 A;  3ED4 A;  4MHX A;  3T00 A;  5AJ9 A;  1AJD A;  2GSO A;  4CXS A;  5INH A;  4ZG7 A;  5L0E A;  3KD8 A;  4N7T A;  1KH5 A;  3M7V A;  1N2K A;  2W5Q A;  1HQA A;  3IDD A;  2X98 A;  4LRF A;  4LR8 A;  3UN3 A;  4KAY A;  4UPI A;  4KAV A;  2ANH A;  2XRG A;  3WAW A;  2W5S A;  4ZGA A;  2W5R A;  1EI6 A;  3UN2 A;  4LRE A;  4GTW A;  4ZG6 A;  2W5V A;  1O98 A;  4UOP A;  1ALK A;  1KHK A;  4CXK A;  2VQR A;  4KM4 A;  2XR9 A;  3E2D A;  1ALI A;  3NKN A;  1EJJ A;  1ELZ A;  4QAX A;  1E3C P;  1ALH A;  3NVL A;  1AJC A;  3TX0 A;  3WAX A;  2GLQ A;  1HDH A;  1KH9 A;  2GA3 A;  4GTY A;  3Q3Q A;  3M8Z A;  4LRA A;  1AJA A;  4MIV A;  5DLW A;  2W5W A;  5LIA A;  1SHN A;  4KJG A;  4UOR A;  5LRN A;  2W5X A;  2W8S A;  3A52 A;  1ANJ A;  3WAV A;  4CXU A;  1KHJ A;  3DPC A;  1EW9 A;  1EW2 A;  5K4P A; 
#chains in the Genus database with same CATH homology
 1KH7 A;  4YR1 A;  3MK0 A;  5C66 A;  1ED8 A;  5KXA A;  3TWZ A;  5EGE A;  5LQQ A;  4TN0 A;  5DLT A;  3BDG B;  1E1Z P;  2GSN A;  3IGZ B;  3NKQ A;  3SZY A;  4CYR A;  4UPH A;  1EQJ A;  1B8J A;  5IJQ A;  1URB A;  3BDF A;  5GRR A;  1Y6V A;  5IJS A;  3BDH A;  4UPK A;  4UPL A;  1ZEB A;  1ZED A;  1E33 P;  4MY4 A;  4GTX A;  5L0B A;  1KHN A;  2W8D A;  3NKO A;  3UO0 A;  4FDJ A;  1P49 A;  4LR2 A;  3UNY A;  3NKR A;  3WBH A;  4ZG9 A;  1URA A;  3NKP A;  4NWX A;  1HJK A;  4FDI A;  3LXQ A;  2IUC B;  1ELX A;  4LR7 A;  1ED9 A;  3OT9 A;  2W5T A;  3BDG A;  1ELY A;  5HRT A;  3WAY A;  3B5Q A;  3M8Y A;  5EGH A;  2QZU A;  3M8W A;  2GSU A;  1KHL A;  2ZKT A;  1K7H A;  1ZEF A;  2IFY A;  1SHQ A;  4NWJ A;  1AJB A;  1ALJ A;  1EW8 A;  4CYS A;  4GTZ A;  4LRB A;  5LRM A;  1E2S P;  2RH6 A;  1O99 A;  3MK1 A;  2G9Y A;  3T01 A;  2IUC A;  1ANI A;  4LRC A;  3MK2 A;  1N2L A;  3DYC A;  3UN5 A;  5DLV A;  4LQY A;  4UOO A;  1AUK A;  3TG0 A;  3CMR A;  1FSU A;  3IGY B;  2D1G A;  1KH4 A;  5TJ3 A;  5L0K A;  4B56 A;  3T02 A;  5GOV A;  3NKM A;  1Y7A A;  3SZZ A;  4KJD A;  4LRD A;  4LR9 A;  3ED4 A;  4MHX A;  3T00 A;  5AJ9 A;  1AJD A;  2GSO A;  4CXS A;  5INH A;  4ZG7 A;  5L0E A;  3KD8 A;  4N7T A;  1KH5 A;  3M7V A;  1N2K A;  2W5Q A;  1HQA A;  3IDD A;  2X98 A;  4LRF A;  4LR8 A;  3UN3 A;  4KAY A;  4UPI A;  4KAV A;  2ANH A;  2XRG A;  3WAW A;  2W5S A;  4ZGA A;  2W5R A;  1EI6 A;  3UN2 A;  4LRE A;  4GTW A;  4ZG6 A;  2W5V A;  1O98 A;  4UOP A;  1ALK A;  1KHK A;  4CXK A;  2VQR A;  4KM4 A;  2XR9 A;  3E2D A;  1ALI A;  3NKN A;  1EJJ A;  1ELZ A;  4QAX A;  1E3C P;  1ALH A;  3NVL A;  1AJC A;  3TX0 A;  3WAX A;  2GLQ A;  1HDH A;  1KH9 A;  2GA3 A;  4GTY A;  3Q3Q A;  3M8Z A;  4LRA A;  1AJA A;  4MIV A;  5DLW A;  2W5W A;  5LIA A;  1SHN A;  4KJG A;  4UOR A;  5LRN A;  2W5X A;  2W8S A;  3A52 A;  1ANJ A;  3WAV A;  4CXU A;  1KHJ A;  3DPC A;  1EW9 A;  1EW2 A;  5K4P A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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